mRNA_S-firma_M_contig9164.20106.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9164.20106.1
Unique NamemRNA_S-firma_M_contig9164.20106.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
BLAST of mRNA_S-firma_M_contig9164.20106.1 vs. uniprot
Match: A0A0Q1DLR3_9FLAO (Dihydrofolate reductase n=1 Tax=Muricauda eckloniae TaxID=346185 RepID=A0A0Q1DLR3_9FLAO)

HSP 1 Score: 208 bits (530), Expect = 3.350e-67
Identity = 100/115 (86.96%), Postives = 104/115 (90.43%), Query Frame = 1
Query:    1 SIESFPKALPNREHSVITRDRNYAPKFLCTVVHSLHEALELVATDARSFIIGGGEIYKQAMEFATDIELTRVHSSFEADTFFPEIDASWNLVKEEYHPKDDKHIYDFTYCTYRKK 345
            ++ESFPKALPNREH VITRDR Y PKF C VVHSL EALE  ATDARSFIIGGGEIYKQAMEFATDIELTRVHSSFEADTFFPEIDASWNLVKEEYHPKDDKH +DFTY TY K+
Sbjct:   48 TLESFPKALPNREHIVITRDREYVPKFPCIVVHSLPEALEHAATDARSFIIGGGEIYKQAMEFATDIELTRVHSSFEADTFFPEIDASWNLVKEEYHPKDDKHAFDFTYMTYTKR 162          
BLAST of mRNA_S-firma_M_contig9164.20106.1 vs. uniprot
Match: A0A285MWM5_9FLAO (Dihydrofolate reductase n=1 Tax=Muricauda parva TaxID=1247520 RepID=A0A285MWM5_9FLAO)

HSP 1 Score: 188 bits (478), Expect = 2.610e-59
Identity = 86/116 (74.14%), Postives = 102/116 (87.93%), Query Frame = 1
Query:    1 SIESFPKALPNREHSVITRDRNYAPKFLCTVVHSLHEALELVATDARSFIIGGGEIYKQAMEFATDIELTRVHSSFEADTFFPEIDAS-WNLVKEEYHPKDDKHIYDFTYCTYRKK 345
            ++ESFPKALPNREH V+TRD+NYAPKF CTVVHSL +A+ L++ D  +FIIGGGEIYKQAM+FATDIELTR+H SFEADTFFP+ID + W +V EEYHPKDDKH YDFTY TY++K
Sbjct:   48 TLESFPKALPNREHIVVTRDQNYAPKFPCTVVHSLEDAIALISNDECAFIIGGGEIYKQAMDFATDIELTRIHDSFEADTFFPKIDTTAWEIVSEEYHPKDDKHQYDFTYLTYQRK 163          
BLAST of mRNA_S-firma_M_contig9164.20106.1 vs. uniprot
Match: A0A2Z4LTC9_9FLAO (Dihydrofolate reductase n=1 Tax=Muricauda aurantiaca TaxID=1383885 RepID=A0A2Z4LTC9_9FLAO)

HSP 1 Score: 185 bits (469), Expect = 6.110e-58
Identity = 87/116 (75.00%), Postives = 102/116 (87.93%), Query Frame = 1
Query:    1 SIESFPKALPNREHSVITRDRNYAPKFLCTVVHSLHEALELVATDARSFIIGGGEIYKQAMEFATDIELTRVHSSFEADTFFPEIDAS-WNLVKEEYHPKDDKHIYDFTYCTYRKK 345
            ++ESF KALPNREH VITRD++Y PKF CTVVHSL  AL+L A + +SFIIGGG+IY+QAMEFATDIELTR+HSSFEADTFFPEID + W+LVKEEYHPKD KH Y+FTY TYR++
Sbjct:   48 TLESFAKALPNREHIVITRDKDYIPKFECTVVHSLEHALDLAANEDKSFIIGGGQIYEQAMEFATDIELTRIHSSFEADTFFPEIDKNIWSLVKEEYHPKDGKHAYNFTYLTYRRQ 163          
BLAST of mRNA_S-firma_M_contig9164.20106.1 vs. uniprot
Match: UPI0016870897 (dihydrofolate reductase n=1 Tax=Flagellimonas sp. S3867 TaxID=2768063 RepID=UPI0016870897)

HSP 1 Score: 184 bits (468), Expect = 8.680e-58
Identity = 86/116 (74.14%), Postives = 100/116 (86.21%), Query Frame = 1
Query:    1 SIESFPKALPNREHSVITRDRNYAPKFLCTVVHSLHEALELVATDARSFIIGGGEIYKQAMEFATDIELTRVHSSFEADTFFPEIDAS-WNLVKEEYHPKDDKHIYDFTYCTYRKK 345
            ++ESFPKALPNREH V+TRD+ Y PKF CTVVH+L  A+ELV TD R+FIIGGGEIYKQ++ FATDIELTR+H +FEADTFFP+ID S W LVKE+YHPKDD H YDFTY TY+KK
Sbjct:   48 TLESFPKALPNREHIVVTRDQGYKPKFPCTVVHTLESAIELVETDERAFIIGGGEIYKQSLVFATDIELTRIHHAFEADTFFPDIDDSIWELVKEKYHPKDDGHKYDFTYLTYKKK 163          
BLAST of mRNA_S-firma_M_contig9164.20106.1 vs. uniprot
Match: A0A316LCX2_9FLAO (Dihydrofolate reductase n=1 Tax=Muricauda koreensis TaxID=2201895 RepID=A0A316LCX2_9FLAO)

HSP 1 Score: 184 bits (467), Expect = 1.230e-57
Identity = 84/116 (72.41%), Postives = 100/116 (86.21%), Query Frame = 1
Query:    1 SIESFPKALPNREHSVITRDRNYAPKFLCTVVHSLHEALELVATDARSFIIGGGEIYKQAMEFATDIELTRVHSSFEADTFFPEIDAS-WNLVKEEYHPKDDKHIYDFTYCTYRKK 345
            ++ESFPKALPNREH V+TRD+NY PKF CT+ HS+  ALEL+  +  +FIIGGGEIYKQAMEFATDIELTR+HSSFEADTFFP IDA  W LV EE+HPKD+KH++DF+Y TYR+K
Sbjct:   48 TLESFPKALPNREHIVVTRDKNYIPKFPCTITHSIENALELITGEESAFIIGGGEIYKQAMEFATDIELTRIHSSFEADTFFPAIDADDWELVYEEHHPKDEKHLHDFSYLTYRRK 163          
BLAST of mRNA_S-firma_M_contig9164.20106.1 vs. uniprot
Match: UPI0010A630B4 (dihydrofolate reductase n=1 Tax=Muricauda onchidii TaxID=2562684 RepID=UPI0010A630B4)

HSP 1 Score: 182 bits (463), Expect = 5.000e-57
Identity = 85/116 (73.28%), Postives = 99/116 (85.34%), Query Frame = 1
Query:    1 SIESFPKALPNREHSVITRDRNYAPKFLCTVVHSLHEALELVATDARSFIIGGGEIYKQAMEFATDIELTRVHSSFEADTFFPEID-ASWNLVKEEYHPKDDKHIYDFTYCTYRKK 345
            ++ESFPKALPNREH V+TRD+NY PKF C VVHSL EA+ LV  + RSFIIGGGEIYKQ+M  ATDIELTR+H SFEADTFFPEID A+W L +E+YHPKDDKH +DFTY TY++K
Sbjct:   48 TLESFPKALPNREHIVVTRDQNYKPKFPCKVVHSLEEAIGLVGDEERSFIIGGGEIYKQSMAIATDIELTRIHHSFEADTFFPEIDEAAWELTREKYHPKDDKHKFDFTYLTYKRK 163          
BLAST of mRNA_S-firma_M_contig9164.20106.1 vs. uniprot
Match: A0A5C8V8C7_9FLAO (Dihydrofolate reductase n=1 Tax=Flagellimonas hymeniacidonis TaxID=2603628 RepID=A0A5C8V8C7_9FLAO)

HSP 1 Score: 176 bits (446), Expect = 1.930e-54
Identity = 83/116 (71.55%), Postives = 97/116 (83.62%), Query Frame = 1
Query:    1 SIESFPKALPNREHSVITRDRNYAPKFLCTVVHSLHEALELVATDARSFIIGGGEIYKQAMEFATDIELTRVHSSFEADTFFPEIDAS-WNLVKEEYHPKDDKHIYDFTYCTYRKK 345
            ++ESFPKALPNREH VITRD NY PKF CTVVHS+  A+ LV   A ++IIGGGEIYKQAM FATDIELTR+H SFEADTFFPEID + W LVKEEYH KD++H +DFTY +Y++K
Sbjct:   48 TLESFPKALPNREHIVITRDTNYTPKFPCTVVHSIENAIALVNPSASAYIIGGGEIYKQAMAFATDIELTRIHDSFEADTFFPEIDETQWELVKEEYHSKDERHKHDFTYRSYKRK 163          
BLAST of mRNA_S-firma_M_contig9164.20106.1 vs. uniprot
Match: UPI0013D4EC57 (dihydrofolate reductase n=2 Tax=Flagellimonas TaxID=444459 RepID=UPI0013D4EC57)

HSP 1 Score: 176 bits (446), Expect = 2.060e-54
Identity = 82/116 (70.69%), Postives = 99/116 (85.34%), Query Frame = 1
Query:    1 SIESFPKALPNREHSVITRDRNYAPKFLCTVVHSLHEALELVATDARSFIIGGGEIYKQAMEFATDIELTRVHSSFEADTFFPEIDAS-WNLVKEEYHPKDDKHIYDFTYCTYRKK 345
            ++ESFPKALPNREH VITRD+ Y PKF CT+VHS+ +A+ L A   ++FIIGGGEIYKQAMEFAT IELTR+H+SFEADTFFPEID S W LVK+E+HPKD+KH Y+FTY TY ++
Sbjct:   48 TLESFPKALPNREHIVITRDKTYVPKFPCTLVHSITDAIALTANTQQAFIIGGGEIYKQAMEFATTIELTRIHASFEADTFFPEIDESIWALVKKEHHPKDEKHNYEFTYLTYSRR 163          
BLAST of mRNA_S-firma_M_contig9164.20106.1 vs. uniprot
Match: A0A3A1NQB9_9FLAO (Dihydrofolate reductase n=3 Tax=Flavobacteriia TaxID=117743 RepID=A0A3A1NQB9_9FLAO)

HSP 1 Score: 175 bits (443), Expect = 5.530e-54
Identity = 84/116 (72.41%), Postives = 94/116 (81.03%), Query Frame = 1
Query:    1 SIESFPKALPNREHSVITRDRNYAPKFLCTVVHSLHEALELVATDARSFIIGGGEIYKQAMEFATDIELTRVHSSFEADTFFPEIDAS-WNLVKEEYHPKDDKHIYDFTYCTYRKK 345
            ++ESFPK LPNREH VITRD +Y+PKF CTV HSL EA+ELV     +FIIGGGEIYKQ+M FATDIELTRVH  FEADTFFP+ID S W L+ EEYHPKDD H Y FTY TYR+K
Sbjct:   48 TLESFPKPLPNREHIVITRDTDYSPKFPCTVTHSLEEAIELVKEGETAFIIGGGEIYKQSMRFATDIELTRVHGIFEADTFFPKIDESQWELLNEEYHPKDDTHRYAFTYLTYRRK 163          
BLAST of mRNA_S-firma_M_contig9164.20106.1 vs. uniprot
Match: UPI001F3D4FD0 (dihydrofolate reductase n=1 Tax=Muricauda sp. SCSIO 65647 TaxID=2908843 RepID=UPI001F3D4FD0)

HSP 1 Score: 174 bits (441), Expect = 1.110e-53
Identity = 79/116 (68.10%), Postives = 96/116 (82.76%), Query Frame = 1
Query:    1 SIESFPKALPNREHSVITRDRNYAPKFLCTVVHSLHEALELVATDARSFIIGGGEIYKQAMEFATDIELTRVHSSFEADTFFPEIDAS-WNLVKEEYHPKDDKHIYDFTYCTYRKK 345
            ++ESFPK LPNREH V+T  +NY+PKF C VVHSL EA+ L   D RSFIIGGGEIY+Q+M+FAT IELTR+H+ FEADTFFP++D + W LVK+EYHPKD++H YDFTY TY KK
Sbjct:   48 TLESFPKPLPNREHIVVTSQKNYSPKFECRVVHSLEEAIALTKKDERSFIIGGGEIYRQSMDFATHIELTRIHADFEADTFFPKVDLNVWQLVKQEYHPKDERHQYDFTYLTYTKK 163          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9164.20106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0Q1DLR3_9FLAO3.350e-6786.96Dihydrofolate reductase n=1 Tax=Muricauda ecklonia... [more]
A0A285MWM5_9FLAO2.610e-5974.14Dihydrofolate reductase n=1 Tax=Muricauda parva Ta... [more]
A0A2Z4LTC9_9FLAO6.110e-5875.00Dihydrofolate reductase n=1 Tax=Muricauda aurantia... [more]
UPI00168708978.680e-5874.14dihydrofolate reductase n=1 Tax=Flagellimonas sp. ... [more]
A0A316LCX2_9FLAO1.230e-5772.41Dihydrofolate reductase n=1 Tax=Muricauda koreensi... [more]
UPI0010A630B45.000e-5773.28dihydrofolate reductase n=1 Tax=Muricauda onchidii... [more]
A0A5C8V8C7_9FLAO1.930e-5471.55Dihydrofolate reductase n=1 Tax=Flagellimonas hyme... [more]
UPI0013D4EC572.060e-5470.69dihydrofolate reductase n=2 Tax=Flagellimonas TaxI... [more]
A0A3A1NQB9_9FLAO5.530e-5472.41Dihydrofolate reductase n=3 Tax=Flavobacteriia Tax... [more]
UPI001F3D4FD01.110e-5368.10dihydrofolate reductase n=1 Tax=Muricauda sp. SCSI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9164contigS-firma_M_contig9164:3793..4140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score177.2
Seed ortholog evalue4.5e-42
Seed eggNOG ortholog1250232.JQNJ01000001_gene2103
Preferred namefolA
KEGG rclassRC00109,RC00110,RC00158
KEGG koko:K00287,ko:K18589
KEGG ReactionR00936,R00937,R00939,R00940,R02235,R02236,R11765
KEGG Pathwayko00670,ko00790,ko01100,ko01523,map00670,map00790,map01100,map01523
KEGG ModuleM00126,M00840
EggNOG free text desc.Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
EggNOG OGs1I272@117743,4NQ2Y@976,COG0262@1,COG0262@2
EC1.5.1.3
COG Functional cat.H
Best tax levelFlavobacteriia
Best eggNOG OGNA|NA|NA
BRITEbr01600,ko00000,ko00001,ko00002,ko01000,ko01504
Hectar predicted targeting categoryother localisation
Exons1
Model size348
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828742.6412532-CDS-S-firma_M_contig9164:3792..41401622828742.6412532-CDS-S-firma_M_contig9164:3792..4140Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9164 3793..4140 +
1697105135.3213263-CDS-S-firma_M_contig9164:3792..41401697105135.3213263-CDS-S-firma_M_contig9164:3792..4140Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9164 3793..4140 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9164.20106.1prot_S-firma_M_contig9164.20106.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9164 3793..4140 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9164.20106.1

>prot_S-firma_M_contig9164.20106.1 ID=prot_S-firma_M_contig9164.20106.1|Name=mRNA_S-firma_M_contig9164.20106.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=116bp
SIESFPKALPNREHSVITRDRNYAPKFLCTVVHSLHEALELVATDARSFI
IGGGEIYKQAMEFATDIELTRVHSSFEADTFFPEIDASWNLVKEEYHPKD
DKHIYDFTYCTYRKK*
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mRNA from alignment at S-firma_M_contig9164:3793..4140+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9164.20106.1 ID=mRNA_S-firma_M_contig9164.20106.1|Name=mRNA_S-firma_M_contig9164.20106.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=348bp|location=Sequence derived from alignment at S-firma_M_contig9164:3793..4140+ (Sphaerotrichia firma Sfir_13m male)
AGCATTGAAAGCTTTCCAAAGGCATTGCCCAACAGGGAACATAGCGTAAT TACAAGGGATAGGAATTATGCGCCAAAATTTCTTTGTACAGTGGTACATT CTTTACACGAGGCTTTGGAACTTGTGGCTACTGATGCACGTTCTTTTATT ATTGGTGGTGGTGAAATTTATAAACAAGCCATGGAATTTGCAACGGATAT TGAGTTGACCAGGGTTCATTCATCCTTTGAAGCTGATACTTTTTTTCCAG AAATTGATGCGTCTTGGAATCTGGTCAAGGAAGAATACCATCCCAAAGAT GATAAGCACATCTATGATTTTACGTATTGTACCTATCGGAAAAAATAG
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Coding sequence (CDS) from alignment at S-firma_M_contig9164:3793..4140+

>mRNA_S-firma_M_contig9164.20106.1 ID=mRNA_S-firma_M_contig9164.20106.1|Name=mRNA_S-firma_M_contig9164.20106.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=696bp|location=Sequence derived from alignment at S-firma_M_contig9164:3793..4140+ (Sphaerotrichia firma Sfir_13m male)
AGCATTGAAAGCTTTCCAAAGGCATTGCCCAACAGGGAACATAGCGTAAT
TACAAGGGATAGGAATTATGCGCCAAAATTTCTTTGTACAGTGGTACATT
CTTTACACGAGGCTTTGGAACTTGTGGCTACTGATGCACGTTCTTTTATT
ATTGGTGGTGGTGAAATTTATAAACAAGCCATGGAATTTGCAACGGATAT
TGAGTTGACCAGGGTTCATTCATCCTTTGAAGCTGATACTTTTTTTCCAG
AAATTGATGCGTCTTGGAATCTGGTCAAGGAAGAATACCATCCCAAAGAT
GATAAGCACATCTATGATTTTACGTATTGTACCTATCGGAAAAAATAGAG
CATTGAAAGCTTTCCAAAGGCATTGCCCAACAGGGAACATAGCGTAATTA
CAAGGGATAGGAATTATGCGCCAAAATTTCTTTGTACAGTGGTACATTCT
TTACACGAGGCTTTGGAACTTGTGGCTACTGATGCACGTTCTTTTATTAT
TGGTGGTGGTGAAATTTATAAACAAGCCATGGAATTTGCAACGGATATTG
AGTTGACCAGGGTTCATTCATCCTTTGAAGCTGATACTTTTTTTCCAGAA
ATTGATGCGTCTTGGAATCTGGTCAAGGAAGAATACCATCCCAAAGATGA
TAAGCACATCTATGATTTTACGTATTGTACCTATCGGAAAAAATAG
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