mRNA_S-firma_M_contig9155.20096.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9155.20096.1
Unique NamemRNA_S-firma_M_contig9155.20096.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
BLAST of mRNA_S-firma_M_contig9155.20096.1 vs. uniprot
Match: A0A6H5KPF3_9PHAE (GH16 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPF3_9PHAE)

HSP 1 Score: 423 bits (1088), Expect = 1.350e-143
Identity = 188/228 (82.46%), Postives = 207/228 (90.79%), Query Frame = 1
Query:    1 QTWNKFCFTGGIVEIRATLPGRSDVGGLWPAMWLMGNLARATYTASSDFTWPWSYNRCNRTTEEQAGWQKQQEISACDESVHYGFHPNMGRGAPEIDILETMAGTKPGMPFMSTSLQVSPGTSIENRPTEGQVPAPGTWYEKGIYYGNNSTLNKWFYGTHLKHSLPDKSYFADAVSSNHVLSKTHFEDMHTFRLDWQPGGGEDGAKGYLRWYLDDEQLYGIDDDTLVS 684
            Q+W+KFCFTGGIVEIRA LPGR D+GGLWPAMWLMGNLARATYTASSDFTWPWSYN+CNRTT+EQA WQ+QQE+SACD SVHYGFHPN GRGAPEID+LETMAGT PG+PFMSTS QV+PGTSIE RPTEG VP PGTWYE+GI YG NSTLNKWFYG  L+H LP KSY+ADAVSSNHVLS+THFED+HT+RLDWQPGGG++ +KGYLRWYLDDE LYGI  DTL S
Sbjct:  170 QSWDKFCFTGGIVEIRAILPGRPDIGGLWPAMWLMGNLARATYTASSDFTWPWSYNKCNRTTDEQADWQRQQEVSACDASVHYGFHPNTGRGAPEIDLLETMAGTGPGLPFMSTSFQVAPGTSIEERPTEGTVPHPGTWYEEGILYGKNSTLNKWFYGVLLEHDLPGKSYYADAVSSNHVLSETHFEDLHTYRLDWQPGGGDNSSKGYLRWYLDDELLYGITSDTLGS 397          
BLAST of mRNA_S-firma_M_contig9155.20096.1 vs. uniprot
Match: A0A835YPV8_9STRA (Beta-1,6-glucan active enzyme, family GH16 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPV8_9STRA)

HSP 1 Score: 285 bits (729), Expect = 1.250e-90
Identity = 133/232 (57.33%), Postives = 163/232 (70.26%), Query Frame = 1
Query:    1 QTWNKFCFTGGIVEIRATLPGRSDVGGLWPAMWLMGNLARATYTASSDFTWPWSYNRCNRTTEEQAGWQKQQEISACDESVHYGFHPNMGRGAPEIDILETMAGTKP------GMPFMSTSLQVSPGTSIENRPTEGQVPAPGTWYEKGIYYGNNSTLNKWFYGTHLKHSLPDKSYFADAVSSNHVLSKTHFEDMHTFRLDWQPGGGEDGAKGYLRWYLDDEQLYGIDDDTL 678
            Q WNKFCFTGGIVE+ A LPG + +GGLWPA+WL+GNLARATYT+SSD+TWPWSY+RC+R+  E A  Q QQEISACD   H+   P  GRGAPEID+LE M G  P      G P++STS QVSPGT    RP  G+ P PG WYE GI YG N++ N +FYG+ L H  P ++Y+ADA+S+NH LS THF   H +RL+WQ G     A+GYLRWY+D   +YG+   T 
Sbjct:  116 QGWNKFCFTGGIVEVSAALPGEAYIGGLWPAIWLLGNLARATYTSSSDYTWPWSYDRCDRSDAEHAAHQIQQEISACDALKHFDMKPFTGRGAPEIDVLEAMPGRDPYSEFVVGKPYISTSFQVSPGTE-RKRPVLGKFPQPGMWYEDGIEYGKNTSQNLYFYGSKLIHDPPSRTYWADAISANHALSPTHFNKQHIYRLEWQGG-----AEGYLRWYIDGAFVYGMTQGTF 341          
BLAST of mRNA_S-firma_M_contig9155.20096.1 vs. uniprot
Match: A0A7S3K4P5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K4P5_9STRA)

HSP 1 Score: 261 bits (668), Expect = 6.590e-82
Identity = 124/231 (53.68%), Postives = 164/231 (71.00%), Query Frame = 1
Query:    1 QTWNKFCFTGGIVEIRATLPGRSDVGGLWPAMWLMGNLARATYTASSDFTWPWSYNRCNRTTEEQAGWQKQQEISACDESVHYGFHPNMGRGAPEIDILETMAGTKP---GM--PFMSTSLQVSPGTSIENRPTEGQVPAPGTWYEKGIYYGNNSTLNKWFYGTHLKHSLPDKSYFADAVSSNHVLSKTHFEDMHTFRLDWQPGGGEDGAKGYLRWYLDDEQLYGIDDDTL 678
            QTWNKFCFTGGIVEIRA LPG++ VGGLWPAMWL+G L+RATY  S+D+ WPWSYN+C+R        QKQQEI+AC+ + HYG   + GRGAPEID+LE M G +    G+  P+ S S QV+PG  + +RP EG++P  G WY KG+ +G N+TLN +FYGT LKH    ++Y ADA+S+N  L +THF+D HT+RL+W    G+      +RWYLD+E ++ +  +TL
Sbjct:   54 QTWNKFCFTGGIVEIRARLPGKAKVGGLWPAMWLLGALSRATYVGSTDWIWPWSYNKCDRAL------QKQQEINACEPNPHYGLGSSTGRGAPEIDLLEAMPGDETLNYGLQKPYFSASYQVAPG-KLHDRPVEGKLPYRGQWYSKGLKFGANTTLNAFFYGTTLKHPKKGQTYIADAISANRHLHETHFDDFHTWRLEWSTKEGQQS----IRWYLDNEFIFQVLPETL 273          
BLAST of mRNA_S-firma_M_contig9155.20096.1 vs. uniprot
Match: A0A7S2W6G7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W6G7_9STRA)

HSP 1 Score: 254 bits (648), Expect = 8.770e-80
Identity = 122/232 (52.59%), Postives = 158/232 (68.10%), Query Frame = 1
Query:    1 QTWNKFCFTGGIVEIRATLPGRSDVGGLWPAMWLMGNLARATYTASSDFTWPWSYNRCNRTTEEQAGWQKQQEISACDESVHYGFHPNMGRGAPEIDILETMAGTKP------GMPFMSTSLQVSPGTSIENRPTEGQVPAPGTWYEKGIYYGNNSTLNKWFYGTHLKHSLPDKSYFADAVSSNHVLSKTHFEDMHTFRLDWQPGGGEDGAKGYLRWYLDDEQLYGIDDDTL 678
            Q WNKFCFTGGI+E++A LPG + VGGLWPA+WLMGNLARATY  SS++ WPWS+++C+R        QKQQ +SAC+   HYG  PN GRGAPEIDILE M G+        G P+ STSLQ++PG  + NRP  G  P PG WYE G+ YG NS++N +FYGT       D +Y +DA+S N  + K  +E  HT+RL+W+    +   +GY+RWY+DDE +YGI  +TL
Sbjct:  131 QGWNKFCFTGGILEVKALLPGEAYVGGLWPAIWLMGNLARATYVGSSNWMWPWSFDKCSRDL------QKQQLVSACNPHPHYGMLPNSGRGAPEIDILEAMPGSGALPLSTVGKPYFSTSLQIAPGIEV-NRPQGGVWPGPGMWYE-GMEYGANSSMNIFFYGTRNVKKNQDYTYQSDALSGNTQMDKKKWEQWHTYRLEWETKESDPLREGYIRWYMDDELIYGIRGETL 354          
BLAST of mRNA_S-firma_M_contig9155.20096.1 vs. uniprot
Match: A0A7S3XMP4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMP4_HETAK)

HSP 1 Score: 254 bits (649), Expect = 3.960e-79
Identity = 124/236 (52.54%), Postives = 154/236 (65.25%), Query Frame = 1
Query:    1 QTWNKFCFTGGIVEIRATLPGRSDVGGLWPAMWLMGNLARATYTASSDFTWPWSYNRCNRTTEEQAGWQKQQEISACDESVHYGFHPNMGRGAPEIDILETMAG------TKPGMPFMSTSLQVSPGTSIENRPTEGQVPAPGTWYEKGIY-YGNNSTLNKWFYGTHL-KHSLPDKSYFADAVSSNHVLSKTHFEDMHTFRLDWQPGGGEDGAKGYLRWYLDDEQLYGIDDDTLVS 684
            Q WNKFCF GGIVEI A LPG+SD+GGLWPAMW+MGNLARAT+T +SD  WPWS+++C+ T       Q+QQ+ SAC+   HYGF PN GRGAPEIDILE + G      T    P++S+S QVSPG     RP     P PG WY  G + YGN+S +N +FYG  L        +Y ADA+S+N  L  THF+  H +RL+W PG G     GYLRWYLD + +YGI  D L++
Sbjct:  129 QGWNKFCFVGGIVEISAELPGQSDIGGLWPAMWIMGNLARATFTGTSDNVWPWSFDKCDPTV------QQQQKFSACNNVNHYGFKPNKGRGAPEIDILEVLPGSGGLPDTTTKKPYLSSSFQVSPGLDSMYRPQVDHYPIPGNWYGPGGFLYGNDSAMNIFFYGEKLISREAASLNYLADALSANTNLRPTHFDRQHLYRLEWIPGDG-----GYLRWYLDGQMIYGISQDALIN 353          
BLAST of mRNA_S-firma_M_contig9155.20096.1 vs. uniprot
Match: A0A7S2W5Y4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W5Y4_9STRA)

HSP 1 Score: 254 bits (648), Expect = 1.570e-77
Identity = 122/232 (52.59%), Postives = 158/232 (68.10%), Query Frame = 1
Query:    1 QTWNKFCFTGGIVEIRATLPGRSDVGGLWPAMWLMGNLARATYTASSDFTWPWSYNRCNRTTEEQAGWQKQQEISACDESVHYGFHPNMGRGAPEIDILETMAGTKP------GMPFMSTSLQVSPGTSIENRPTEGQVPAPGTWYEKGIYYGNNSTLNKWFYGTHLKHSLPDKSYFADAVSSNHVLSKTHFEDMHTFRLDWQPGGGEDGAKGYLRWYLDDEQLYGIDDDTL 678
            Q WNKFCFTGGI+E++A LPG + VGGLWPA+WLMGNLARATY  SS++ WPWS+++C+R        QKQQ +SAC+   HYG  PN GRGAPEIDILE M G+        G P+ STSLQ++PG  + NRP  G  P PG WYE G+ YG NS++N +FYGT       D +Y +DA+S N  + K  +E  HT+RL+W+    +   +GY+RWY+DDE +YGI  +TL
Sbjct:  131 QGWNKFCFTGGILEVKALLPGEAYVGGLWPAIWLMGNLARATYVGSSNWMWPWSFDKCSRDL------QKQQLVSACNPHPHYGMLPNSGRGAPEIDILEAMPGSGALPLSTVGKPYFSTSLQIAPGIEV-NRPQGGVWPGPGMWYE-GMEYGANSSMNIFFYGTRNVKKNQDYTYQSDALSGNTQMDKKKWEQWHTYRLEWETKESDPLREGYIRWYMDDELIYGIRGETL 354          
BLAST of mRNA_S-firma_M_contig9155.20096.1 vs. uniprot
Match: A0A6U4E3V7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4E3V7_9STRA)

HSP 1 Score: 245 bits (626), Expect = 5.830e-75
Identity = 118/232 (50.86%), Postives = 158/232 (68.10%), Query Frame = 1
Query:    1 QTWNKFCFTGGIVEIRATLPGRSDVGGLWPAMWLMGNLARATYTASSDFTWPWSYNRCNRTTEEQAGWQKQQEISACDESVHYGFHPNMGRGAPEIDILETMAG------TKPGMPFMSTSLQVSPGTSIENRPTEGQVPAPGTWYEKGIYYGNNSTLNKWFYGTHLKHSLPDKSYFADAVSSNHVLSKTHFEDMHTFRLDWQPGGGEDGAKGYLRWYLDDEQLYGIDDDTL 678
            Q WNKFCF+GG VE+ A LPG +D  GLWPA+WL+GNLARATY +SSD+ WPWSY+ C   T E A    QQE+S C  + HYG H + GRGAPEIDILE M G      T    P++S+SLQVSPG   E RP  G  P  G+WYE G++Y  NS++N +FYG  L+H   + SY ADA+S+N  +++T F  MHT+R++W+P    D  KG++ W++D ++++GID + L
Sbjct:   98 QGWNKFCFSGGAVEVSAQLPGNADTSGLWPALWLLGNLARATYVSSSDYMWPWSYDSCPHKTPEVA---VQQELSHCRATPHYGLHAHQGRGAPEIDILEAMPGNEALLRTPINKPYLSSSLQVSPGLP-EPRPVLGHPPQNGSWYE-GMHYAENSSVNIFFYGVKLEHKPTEYSYQADAISANTNINETLFNAMHTYRVEWEPPTSHD--KGHIHWFIDGKKIFGIDGENL 322          
BLAST of mRNA_S-firma_M_contig9155.20096.1 vs. uniprot
Match: A0A7S1FMP1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FMP1_9STRA)

HSP 1 Score: 238 bits (606), Expect = 2.620e-74
Identity = 122/235 (51.91%), Postives = 153/235 (65.11%), Query Frame = 1
Query:    1 QTWNKFCFTGGIVEIRATLPGRSDVGGLWPAMWLMGNLARATYTASSDFTWPWSYNRCNRTTEEQAGWQKQQEISACDESVHYGFHPNMGRGAPEIDILETMAGTKPGMP-------FMSTSLQVSPGTSIENRPTEGQVPAPGTWYEKGIYYGNNST--LNKWFYGTHLKHSLPDKSYFADAVSSNHVLSKTHFEDMHTFRLDWQPGGGEDGAKGYLRWYLDDEQLYGIDDDTL 678
            Q WNKFC TGGIVEI A LPG     GLWPAMWL+GNLARATY  SS+F WP+SY+ C+ +       +  QEISAC++  HY  HP  GRGAPEIDI+E MAGT   +P       + STSLQV+PG    NRP  G  P  GTWY  G+ YG N T  LN +FYG +L H     +Y +DA+S+N  LS+THFE  H +R++W+P    +G  GY+RW++D   +YGI+D TL
Sbjct:   84 QGWNKFCITGGIVEISAKLPGHVFSAGLWPAMWLLGNLARATYVGSSNFVWPFSYDTCDESN------RISQEISACNKINHYDLHPLQGRGAPEIDIIEVMAGTVEKLPHTMITKPYASTSLQVAPGKKY-NRPRLGTRPVNGTWYN-GLQYGKNLTTDLNPFFYGVNLVHEPAKYTYQSDAISANTQLSQTHFERQHVYRVEWEPSD-VNGRGGYVRWFIDGHFVYGIEDYTL 309          
BLAST of mRNA_S-firma_M_contig9155.20096.1 vs. uniprot
Match: F0Y0X7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0X7_AURAN)

HSP 1 Score: 244 bits (623), Expect = 2.450e-72
Identity = 124/233 (53.22%), Postives = 155/233 (66.52%), Query Frame = 1
Query:    1 QTWNKFCFTGGIVEIRATLPGRSDVGGLWPAMWLMGNLARATYTASSDFTWPWSYNRCNRTTEEQAGWQKQQEISACDESVHYGFHPNMGRGAPEIDILETMAGT---KPGM--PFMSTSLQVSPGTSIENRPTEGQVPAPGTWYEKGIYYGNNSTLNKWFYGTHLKHSLPDKSYFADAVSSNHVLSKTHFEDMHTFRLDWQPGGGEDGAKGYLRWYLDDEQLYGIDDDTLVS 684
            Q WNKFCFTGGI+EIRA LPGR DVGGLWP MW+MGNLARATY ASS+  WP+SY  C R        Q++QEI+ C    H+G +P+ GRGAPEID+LE M G      G+  P+ STSLQ++P   I  RP  G  PAPGTWYE  + YG N++ N +FYG  L H   ++SY+ADAVS N  +  + FED HT+RL+W+P       KG + WY D + LYGIDD ++ S
Sbjct:  398 QGWNKFCFTGGILEIRAKLPGRYDVGGLWPGMWMMGNLARATYVASSNHMWPFSYEACARKD------QRRQEINGCMPRPHFGLNPDQGRGAPEIDLLEVMPGEGWLPWGLKKPYYSTSLQLAPAAPI--RPFNGAKPAPGTWYEH-LRYGPNTSQNVFFYGMRLDHGSDEESYWADAVSGNTPIGASEFEDFHTYRLEWKP-------KGSIDWYKDGKFLYGIDDASISS 614          
BLAST of mRNA_S-firma_M_contig9155.20096.1 vs. uniprot
Match: A0A1Z5KJ45_FISSO (GH16 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJ45_FISSO)

HSP 1 Score: 236 bits (603), Expect = 1.270e-71
Identity = 119/237 (50.21%), Postives = 156/237 (65.82%), Query Frame = 1
Query:    1 QTWNKFCFTGGIVEIRATLPGRSDVGGLWPAMWLMGNLARATYTASSDFTWPWSYNRCNRTTEEQAGWQKQQEISACDESVHYGFHPNMGRGAPEIDILETM---AGTKPGM----PFMSTSLQVSPGTSIENRPTEGQVPAPGTWYEKGIYYGNNST----LNKWFYGTHLKHSLPDKSYFADAVSSNHVLSKTHFEDMHTFRLDWQPGGGEDGAKGYLRWYLDDEQLYGIDDDTL 678
            Q+WNKFCF GGI+E RA LPG   +GGLWPA+W++GNLARATY  SSD+ WP+SYNRC+  T      +  QEI AC +  HYG     GRGAPEIDI+E M   AG  P      P+ STSLQ++PG  I+ RP  G+ P  G WYE  + YGN++     LN +FYG  L H     +Y ADA+S+N  L+ TH+  MH +R++W+P   EDG+ GYLRWY D++ ++GI+ D+L
Sbjct:  137 QSWNKFCFVGGIIEFRAKLPGDPKIGGLWPALWMLGNLARATYVGSSDYMWPYSYNRCDSRT------RISQEIDACAKVNHYGMQAYTGRGAPEIDIIEAMQGEAGKLPSTYIQRPYQSTSLQIAPGVEID-RPILGKRPHEGHWYED-LDYGNSTNVTVDLNPFFYGVTLVHKPKQYTYQADAISANLQLNDTHYNSMHLYRVEWEPPA-EDGSGGYLRWYTDEKFVFGINGDSL 364          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9155.20096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPF3_9PHAE1.350e-14382.46GH16 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835YPV8_9STRA1.250e-9057.33Beta-1,6-glucan active enzyme, family GH16 n=1 Tax... [more]
A0A7S3K4P5_9STRA6.590e-8253.68Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2W6G7_9STRA8.770e-8052.59Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S3XMP4_HETAK3.960e-7952.54Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2W5Y4_9STRA1.570e-7752.59Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6U4E3V7_9STRA5.830e-7550.86Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1FMP1_9STRA2.620e-7451.91Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
F0Y0X7_AURAN2.450e-7253.22Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A1Z5KJ45_FISSO1.270e-7150.21GH16 domain-containing protein n=2 Tax=Fistulifera... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9155contigS-firma_M_contig9155:150..4192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score410.6
Seed ortholog evalue4.8e-112
Seed eggNOG ortholog2880.D7FT08
Preferred nameKRE6
KEGG koko:K21850
GOsGO:0000271,GO:0003674,GO:0003824,GO:0004553,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005886,GO:0005933,GO:0005935,GO:0005975,GO:0005976,GO:0006073,GO:0006077,GO:0006078,GO:0006629,GO:0006643,GO:0006665,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0012505,GO:0015926,GO:0016020,GO:0016021,GO:0016043,GO:0016051,GO:0016787,GO:0016798,GO:0030133,GO:0030148,GO:0030176,GO:0030427,GO:0031224,GO:0031227,GO:0031410,GO:0031505,GO:0031982,GO:0031984,GO:0033692,GO:0034637,GO:0034645,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045229,GO:0046467,GO:0051273,GO:0051274,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071852,GO:0071944,GO:0097708,GO:0098827,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.(1->6)-beta-D-glucan biosynthetic process
EggNOG OGs2QR13@2759,COG2273@1
COG Functional cat.G
CAZyGH16
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBeta-1,6-glucan active enzyme, family GH16
Ec32 orthologEc-24_004360.1
Exons5
Model size687
Cds size687
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9155.20096.1prot_S-firma_M_contig9155.20096.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9155 150..4192 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828741.5333643-CDS-S-firma_M_contig9155:149..3461622828741.5333643-CDS-S-firma_M_contig9155:149..346Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9155 150..346 +
1697105134.5622976-CDS-S-firma_M_contig9155:149..3461697105134.5622976-CDS-S-firma_M_contig9155:149..346Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9155 150..346 +
1622828741.5456157-CDS-S-firma_M_contig9155:940..10671622828741.5456157-CDS-S-firma_M_contig9155:940..1067Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9155 941..1067 +
1697105134.5730317-CDS-S-firma_M_contig9155:940..10671697105134.5730317-CDS-S-firma_M_contig9155:940..1067Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9155 941..1067 +
1622828741.5568337-CDS-S-firma_M_contig9155:1992..20191622828741.5568337-CDS-S-firma_M_contig9155:1992..2019Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9155 1993..2019 +
1697105134.5816786-CDS-S-firma_M_contig9155:1992..20191697105134.5816786-CDS-S-firma_M_contig9155:1992..2019Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9155 1993..2019 +
1622828741.568277-CDS-S-firma_M_contig9155:2528..26831622828741.568277-CDS-S-firma_M_contig9155:2528..2683Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9155 2529..2683 +
1697105134.5932286-CDS-S-firma_M_contig9155:2528..26831697105134.5932286-CDS-S-firma_M_contig9155:2528..2683Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9155 2529..2683 +
1622828741.581289-CDS-S-firma_M_contig9155:4011..41921622828741.581289-CDS-S-firma_M_contig9155:4011..4192Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9155 4012..4192 +
1697105134.6027389-CDS-S-firma_M_contig9155:4011..41921697105134.6027389-CDS-S-firma_M_contig9155:4011..4192Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9155 4012..4192 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9155.20096.1

>prot_S-firma_M_contig9155.20096.1 ID=prot_S-firma_M_contig9155.20096.1|Name=mRNA_S-firma_M_contig9155.20096.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=229bp
QTWNKFCFTGGIVEIRATLPGRSDVGGLWPAMWLMGNLARATYTASSDFT
WPWSYNRCNRTTEEQAGWQKQQEISACDESVHYGFHPNMGRGAPEIDILE
TMAGTKPGMPFMSTSLQVSPGTSIENRPTEGQVPAPGTWYEKGIYYGNNS
TLNKWFYGTHLKHSLPDKSYFADAVSSNHVLSKTHFEDMHTFRLDWQPGG
GEDGAKGYLRWYLDDEQLYGIDDDTLVS*
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mRNA from alignment at S-firma_M_contig9155:150..4192+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9155.20096.1 ID=mRNA_S-firma_M_contig9155.20096.1|Name=mRNA_S-firma_M_contig9155.20096.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=4043bp|location=Sequence derived from alignment at S-firma_M_contig9155:150..4192+ (Sphaerotrichia firma Sfir_13m male)
CAGACGTGGAACAAGTTTTGCTTCACGGGGGGCATCGTGGAGATCCGGGC TACGCTCCCCGGCCGGAGCGATGTCGGGGGGCTGTGGCCGGCGATGTGGC TGATGGGGAACCTCGCCCGGGCGACGTACACGGCGTCGTCCGACTTCACG TGGCCTTGGAGCTACAACCGCTGCAACAGGACTACCGAGGAGCAAGCGTG AGTGTCTTTTCTGGGTTTGATTTGATTGAGTGTGTCGTGTGGGCTCGCTC TACTGCTGTAGCTGTGATGGGTCGCGCTTGGTTTTGTTGTGCGGTCGGTG CTCGGGTTTGTTGTTGGTGGTGTTCGGGTTGTTGTTGTTGTTGTTGGTGG TGGTGATGTTGTTGTTGTTGGTGGTGGTGGTGATGTTGTTGTTGTTGGTG GTGGTGGTGATGGTGGTGGTGACAACGTTGTTGATATTGATGTTGATGTT GGTGTGGTGCTGCTGTTGTTATTTTTTTGTTCGGGTTGTTCGGGTTGGTT GTCTTTTTTATGTGTGAGGTGAGGACACCACACCACACCTCCAGCGAATG CTGTTTGCTTGGCAAGTGAGTCACGCCAGAGGGTATTCTGATCACTGCTG TTGTTTGTCGCATGCGCCAAGGAGCGGTGTGACACGCGTACGAAAACGAG CCAATATCAAGCATCAGACGCCGCCGTTTCTGAAACGCTCTCTCTCTCGT TTTCTTTTTTTGGTTCTCCGCAGCTAACATGCTGTAACCTATTCCGCTCC CTGACCTGCGTTTGTGCTTCTTTCTTTGTCGCGAACACAAGCGGGTGGCA GAAGCAGCAGGAGATTTCCGCGTGCGACGAGTCGGTGCACTACGGGTTTC ACCCCAACATGGGCAGGGGCGCACCCGAGATCGACATCTTGGAGACCATG GCGGGGACCAAACCAGGGGTGAGGAACGAGTCACCCGTCACGTTCGTTTT CGCCGTTTCTTCGGTTCGATTTTGGTGCAAAGTAGACTGCTCTCCCGCGC TTCCTTAACCTTGTCCTCGAGAAAAGGGGGGGGGGGGCGGTATGTGTAGC ACGGTATTGTTTCTTTTCGCTTCCTGGTAGCTTTGCGGTTTATGTATATG TAGCACGCTTTGTTTCTTTCCGCTTCCCCGTAGCTTTCTTTGCGCGTGGG ATACTGTACCGACCATCAGCGAGAGGGGGGCGAGAGCACGCCTGGGTGAG ACAGGTGAGGCGTGTTCTGTGTTCTGGTCTGAGTGCTGCTGCGGGTCTGC ACGTCCTTGTTCTTCATCCCGGCGGATTCGGCTTTGGCTCTCTCTCTCCC TGCGTGTTCCAGCATACGTACACGGACCTTCTTGTTCTTCATCCCGGCGG ATTCGGCTTTGGCTCTCGTCTCTCTGCGTGTTCCAGCATACACTACACAG ACCTCTCCGGAGTTCCTTCTTTGATTGGTTGGCCTCTTTTTCCGTTATCT TTCTCTCTTTTTTCAAAATTTGCTTTTACCAAAGCGGTGAAAAAGATTGT TGTACCCTCTTCTAAGTGTTGGCCTCCACAAAAGCCCTTTTTTTCTATGG TTTGGTTGTCCGTCCGCTTTGTAGTCTGTGCCTGGTTTTCCGTCCATCTA TGTTGTCTCCCTGCTGGGCGATAATCGCGAGGCTCACTATTTTTTTTCGG TCTTGGTCTACCTCCGCTGCGGCTGTTTCGATTGCTCCGCGCCTTGCCTC TGCCGGTGCTGGCGCTGCTGTGACGTCATCGGCGGCGGCCCGCGGCGGTG GGCCTTGCTGGTCCCTTCTTATTTTCTTGCCTCGGTGGGCGGGCGGGCGG CGTGTTGTCGACGGATGGTATGGACGCACACATCGCGTCGCAGATGCCCT TCATGTCCACCTCTCTTCAGGTAATTTGCTGTCGTGTGTCCTACGATGCC CGCTGCTCTCACGTTCCTGTTAGTACAGAGGACTGCTGTAAACCTACCCT TGTCCGCCGCACAACAGCTGTGGCATCATTCGTGGCTTCACACCCGTTGG CACACACACTCTTACGGGTGTTTTTTGTTTTGTTTTTTCCCTTCTCTGGC CTCGACGTGTCTGATCCCAGAACCAGCCTCGCTTGTCACCACAATTGGCC CGAAAAAAATGCCCCAGATATGGCATGCTTGAACGCAAGCACACCCCTTT ACGTTCTACAAAACTATAACCGTTTGATACCTATTCAAAGCCAAGTGTAC GTAAAAAACGTAAAAACGTAAAAACGTAACCCTTGTTCCCACGCTGTGCC CTTAGGTTTCGCCGGGCATTTCCATCGAGAATCGACTACTTACATGTTGG GTGTCGGTCTCTCTTTTTTGGGCGAAGCGACTTAACCCCAATCCTTTGTT CCCACACCCCTACATCCGAATCCTCACAGGTGTCACCGGGCACGTCGATC GAGAATCGCCCGACCGAGGGGCAGGTTCCTGCGCCGGGGACGTGGTACGA AAAGGGGATCTACTACGGCAACAACTCCACCCTCAACAAGTGGTTCTACG GCACGCACCTAAAGCACAGCCTGCCCGACAAGAGGTGGGTTGAACGGTCT GGAGGAGCGAGGGTAAAGTGGTGGGTTGAAGGCTGTAGAGGGGCGAGGGT AAAGTGGTGGGTTGAAAGGTGTAGAGGTGCGAGGGTAAAGAGGTGGGTTG CAGGGTGTAGAGGGGCGAGGGTAAAGTGGCGACTTGCAGGGTGTAGAGGG GCGAGGGTAAAGTGGTGGGTTGAAAGGTGTAGAGAGGTGAGGGTAAAGTG GTGGGTTGAAGGGTGTAGAGGGGCGAGGGTGAAGAGGTGGGTTGAAAGGT GTAGAGGTGCGAGGGTAAAGAGGTGGGTTGAAAGGTAGAGGGGCGAGGGT AAAGTGGTGGGTTGAATGAAGGGTGTAGAAGGGGTAAGGGTAAGGGTGGC GGCGAGGGGTTCGGTGTTTTCGTCGGGGGTGTCTCTTGCGGCTTGGACGA GAGGCGAGGTTGAACGGTAACAAGCGTGAGTAACACTGCGAGGGTGAGGG CAAGGGCGAGGGCAAGGGCGAGGGCAAGGAGCCAGTGAGGCTCGTTTCGT CGGCGCTGTCTTGATCTTGTGTGCAGCTTGAACGCGAGGTTTAGCGTCAA GGTGAGGATGACGAGGGGGAAGGGTGGGTGTGGATTCGGTGGGTTCGGGT TGTTGGTGCTGGTGGGTTCTCCCTTGGCAGCTTGAACCCGGAGCTGTCGG ACAGAGGTGAGGGTCAGCGAAAGGGTGAAGGGTAACCGTAAAACGCCCGT CAGCTTGGCAAGATAGGCGAGTTCGCGGGTGAGGGCGAGGGTGAAGGTTC AGCCCGCTTAGTTGTGTCGGTTCGGTCATTGCAGCTCGAAAAAGGAGCTG CCCGCTTCGGTAGGCGTGTCGAGTTTCTGAGCTGGGCTTTTACCTCATCC GCTCCAAGCTCGTTGCTTGCGTTCTTCCAAGCTCTCTAGTCTCCCAAGCT CCTGGCTCAGTCCAACTAAGACCCAACCGACTTCCCCGGTCGCCATCATC GCTCTGTATAGCCAGCTGCAAAGTAGTACTGGAGTAGCTGTTTCGCGCAC GCAGTGTCTGTCGGCCCCGCCCCTACTTGAGTAACCCGCGTTCGTTCTAC CTTTGCACCCGTCAACCCTCACGTCAGACGGTGATGTAGCAGCCCCGGCA ACACCGGAACTAATGCGGTGTGCCGCCCATCCCAGAAGGCGACACAGCTG TCAAACCCTGCCTCAATCAAGCCTTGACCCTATACCGCGACACAGCTATC AAGCCCTGCCTCAAATCAAGCCTTGACCCTATACCGCGACACAGCTGTCA ACCCCTGCCTCGATCAAGCCTTGACCCTATTCCGCGCGCCTCCCTCCGTC CATCCTCCGCAGCTACTTCGCGGACGCTGTGTCGAGCAACCACGTTCTGT CGAAAACCCACTTCGAGGACATGCACACGTTCAGGCTGGACTGGCAGCCG GGCGGCGGGGAGGACGGGGCCAAGGGCTACCTACGCTGGTACCTGGATGA CGAGCAGCTGTACGGCATAGACGATGACACCCTGGTGAGTTGA
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Coding sequence (CDS) from alignment at S-firma_M_contig9155:150..4192+

>mRNA_S-firma_M_contig9155.20096.1 ID=mRNA_S-firma_M_contig9155.20096.1|Name=mRNA_S-firma_M_contig9155.20096.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1374bp|location=Sequence derived from alignment at S-firma_M_contig9155:150..4192+ (Sphaerotrichia firma Sfir_13m male)
CAGACGTGGAACAAGTTTTGCTTCACGGGGGGCATCGTGGAGATCCGGGC
TACGCTCCCCGGCCGGAGCGATGTCGGGGGGCTGTGGCCGGCGATGTGGC
TGATGGGGAACCTCGCCCGGGCGACGTACACGGCGTCGTCCGACTTCACG
TGGCCTTGGAGCTACAACCGCTGCAACAGGACTACCGAGGAGCAAGCCAG
ACGTGGAACAAGTTTTGCTTCACGGGGGGCATCGTGGAGATCCGGGCTAC
GCTCCCCGGCCGGAGCGATGTCGGGGGGCTGTGGCCGGCGATGTGGCTGA
TGGGGAACCTCGCCCGGGCGACGTACACGGCGTCGTCCGACTTCACGTGG
CCTTGGAGCTACAACCGCTGCAACAGGACTACCGAGGAGCAAGCCGGGTG
GCAGAAGCAGCAGGAGATTTCCGCGTGCGACGAGTCGGTGCACTACGGGT
TTCACCCCAACATGGGCAGGGGCGCACCCGAGATCGACATCTTGGAGACC
ATGGCGGGGACCAAACCAGGGCGGGTGGCAGAAGCAGCAGGAGATTTCCG
CGTGCGACGAGTCGGTGCACTACGGGTTTCACCCCAACATGGGCAGGGGC
GCACCCGAGATCGACATCTTGGAGACCATGGCGGGGACCAAACCAGGGAT
GCCCTTCATGTCCACCTCTCTTCAGATGCCCTTCATGTCCACCTCTCTTC
AGGTGTCACCGGGCACGTCGATCGAGAATCGCCCGACCGAGGGGCAGGTT
CCTGCGCCGGGGACGTGGTACGAAAAGGGGATCTACTACGGCAACAACTC
CACCCTCAACAAGTGGTTCTACGGCACGCACCTAAAGCACAGCCTGCCCG
ACAAGAGGTGTCACCGGGCACGTCGATCGAGAATCGCCCGACCGAGGGGC
AGGTTCCTGCGCCGGGGACGTGGTACGAAAAGGGGATCTACTACGGCAAC
AACTCCACCCTCAACAAGTGGTTCTACGGCACGCACCTAAAGCACAGCCT
GCCCGACAAGAGCTACTTCGCGGACGCTGTGTCGAGCAACCACGTTCTGT
CGAAAACCCACTTCGAGGACATGCACACGTTCAGGCTGGACTGGCAGCCG
GGCGGCGGGGAGGACGGGGCCAAGGGCTACCTACGCTGGTACCTGGATGA
CGAGCAGCTGTACGGCATAGACGATGACACCCTGGTGAGTTGACTACTTC
GCGGACGCTGTGTCGAGCAACCACGTTCTGTCGAAAACCCACTTCGAGGA
CATGCACACGTTCAGGCTGGACTGGCAGCCGGGCGGCGGGGAGGACGGGG
CCAAGGGCTACCTACGCTGGTACCTGGATGACGAGCAGCTGTACGGCATA
GACGATGACACCCTGGTGAGTTGA
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