mRNA_S-firma_M_contig914.20085.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig914.20085.1
Unique NamemRNA_S-firma_M_contig914.20085.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
BLAST of mRNA_S-firma_M_contig914.20085.1 vs. uniprot
Match: A0A6H5JZI5_9PHAE (ATP synthase subunit alpha n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZI5_9PHAE)

HSP 1 Score: 438 bits (1127), Expect = 2.560e-150
Identity = 226/233 (97.00%), Postives = 232/233 (99.57%), Query Frame = 1
Query:    1 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGDAAGNGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQRKCMKQVAGTMKLELAQYREVAAFAKFGSDLDASTQQQLNRGVRLYELLKQDQYVPLEVEEQVVILFAGVKGFIDRVDVDKVTAYEKAWLEHIKASHSSDILEGIKKDNYELTDDMQKKLSAVCDEFTTSFTN 699
            QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGDA+GNGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQRKCMKQVAGTMKLELAQYREVAAFAKFGSDLDASTQQQLNRGVRLYELLKQDQYVPLEVEEQVVILFAGVKGFIDRVDV+KVTAYEKAWL HIKASHSSDILEGIKKDNYELTDDMQ+KL++VCDEFTTSFT+
Sbjct:  319 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGDASGNGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQRKCMKQVAGTMKLELAQYREVAAFAKFGSDLDASTQQQLNRGVRLYELLKQDQYVPLEVEEQVVILFAGVKGFIDRVDVNKVTAYEKAWLAHIKASHSSDILEGIKKDNYELTDDMQQKLASVCDEFTTSFTS 551          
BLAST of mRNA_S-firma_M_contig914.20085.1 vs. uniprot
Match: A0A836CH44_9STRA (ATP synthase subunit alpha n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH44_9STRA)

HSP 1 Score: 395 bits (1016), Expect = 1.680e-133
Identity = 199/231 (86.15%), Postives = 218/231 (94.37%), Query Frame = 1
Query:    1 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGDAAGNGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQRKCMKQVAGTMKLELAQYREVAAFAKFGSDLDASTQQQLNRGVRLYELLKQDQYVPLEVEEQVVILFAGVKGFIDRVDVDKVTAYEKAWLEHIKASHSSDILEGIKKDNYELTDDMQKKLSAVCDEFTTSF 693
            QMSLLLRRPPGREAYPGDVFYLHSRLLER+AK+G A GNGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQRKCMKQVAGTMKLELAQYREVAAFAKFGSDLDA+TQQQLNRGVRLYELLKQ+QY P+EVE+QVVILFAGVKGF+D++ V++V AYEKAWLEHIK +H  ++LEGIKKD YELT  M ++LS +CD+FTT+F
Sbjct:  316 QMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMGAAMGNGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQRKCMKQVAGTMKLELAQYREVAAFAKFGSDLDAATQQQLNRGVRLYELLKQNQYQPMEVEDQVVILFAGVKGFVDKIAVNQVQAYEKAWLEHIKTAHKDEVLEGIKKDKYELTKPMMERLSKICDDFTTAF 546          
BLAST of mRNA_S-firma_M_contig914.20085.1 vs. uniprot
Match: A0A6V2WS15_HETAK (ATP synthase subunit alpha n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2WS15_HETAK)

HSP 1 Score: 370 bits (949), Expect = 1.990e-123
Identity = 191/232 (82.33%), Postives = 207/232 (89.22%), Query Frame = 1
Query:    1 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGDAAGNGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQRKCMKQVAGTMKLELAQYREVAAFAKFGSDLDASTQQQLNRGVRLYELLKQDQYVPLEVEEQVVILFAGVKGFIDRVDVDKVTAYEKAWLEHIKASHSSDILEGIKKDNYELTDDMQKKLSAVCDEFTTSFT 696
            QMSLLLRRPPGREAYPGDVFYLHSRLLERAAK+ D  G GSLTALP+IETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQ K MKQVAGTMKLELAQYREVAAFAKFGSDLDA+TQQQLNRGVRLYELLKQ QY PLEVEEQVV+LFAGV+GFIDRVDV  VT +EKAWL H K +H    L  IKK+ Y ++D+M KK + +C+EFT+SF+
Sbjct:  316 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDTFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQVKAMKQVAGTMKLELAQYREVAAFAKFGSDLDAATQQQLNRGVRLYELLKQPQYQPLEVEEQVVVLFAGVRGFIDRVDVAAVTDFEKAWLAHCKNNHYDATLGAIKKNKYAISDEMDKKFTELCEEFTSSFS 547          
BLAST of mRNA_S-firma_M_contig914.20085.1 vs. uniprot
Match: A0A6U4D8B6_9STRA (ATP synthase subunit alpha n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4D8B6_9STRA)

HSP 1 Score: 368 bits (944), Expect = 8.370e-123
Identity = 193/233 (82.83%), Postives = 210/233 (90.13%), Query Frame = 1
Query:    1 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGDAAGNGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQRKCMKQVAGTMKLELAQYREVAAFAKFGSDLDASTQQQLNRGVRLYELLKQDQYVPLEVEEQVVILFAGVKGFIDRVDVDKVTAYEKAWLEHIKASHSSDILEGIKKDNYELTDDMQKKLSAVCDEFTTSFTN 699
            QMSLLLRRPPGREAYPGDVFYLHSRLLERAAK+GDA G GSLTALP+IETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQ K MKQVAGTMKLELAQYREVAAFAKFGSDLD +TQQQLNRGVRLYELLKQ Q+ PLE EEQ+V+LFAGVKG++DRVDV  VTA+E AWL H+K+SHS DI++ IK   Y + D ++ KL  VCDEFTTSFT+
Sbjct:  308 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMGDAFGAGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQVKAMKQVAGTMKLELAQYREVAAFAKFGSDLDPATQQQLNRGVRLYELLKQPQFEPLETEEQIVVLFAGVKGYLDRVDVASVTAFETAWLNHVKSSHS-DIIDMIKS-KYVMDDAIEGKLHKVCDEFTTSFTS 538          
BLAST of mRNA_S-firma_M_contig914.20085.1 vs. uniprot
Match: A0A7S3I9N8_9CILI (Hypothetical protein (Fragment) n=1 Tax=Fabrea salina TaxID=342563 RepID=A0A7S3I9N8_9CILI)

HSP 1 Score: 358 bits (918), Expect = 5.820e-122
Identity = 184/228 (80.70%), Postives = 209/228 (91.67%), Query Frame = 1
Query:    1 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGDAAGNGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQRKCMKQVAGTMKLELAQYREVAAFAKFGSDLDASTQQQLNRGVRLYELLKQDQYVPLEVEEQVVILFAGVKGFIDRVDVDKVTAYEKAWLEHIKASHSSDILEGIKKDNYELTDDMQKKLSAVCDEFT 684
            QMSLLLRRPPGREAYPGDVFYLHSRLLERAAK+ DA+G GSLTALP+IETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQ K MKQV+GTMKL+LAQYREVAAFAKFGSDLDA+TQQQLNRGVRLYEL+KQDQY P+EVEEQVV+LFAGV+G+IDR+DV +VT +EKAWL+ +KA+HS  IL  IK    E++ ++  KL+++CDEF+
Sbjct:   92 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDASGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQVKAMKQVSGTMKLDLAQYREVAAFAKFGSDLDAATQQQLNRGVRLYELIKQDQYQPMEVEEQVVVLFAGVRGYIDRIDVAQVTTFEKAWLDFVKANHSG-ILSEIKTKK-EISKELDAKLASICDEFS 317          
BLAST of mRNA_S-firma_M_contig914.20085.1 vs. uniprot
Match: A0A7S2W4M6_9STRA (ATP synthase subunit alpha n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W4M6_9STRA)

HSP 1 Score: 360 bits (923), Expect = 1.360e-119
Identity = 185/232 (79.74%), Postives = 211/232 (90.95%), Query Frame = 1
Query:    1 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGDAAGNGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQRKCMKQVAGTMKLELAQYREVAAFAKFGSDLDASTQQQLNRGVRLYELLKQDQYVPLEVEEQVVILFAGVKGFIDRVDVDKVTAYEKAWLEHIKASHSSDILEGIKKDNYELTDDMQKKLSAVCDEFTTSFT 696
            QMSLLLRRPPGREAYPGDVFYLHSRLLERAAK+ D  G GSLTALP+IETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQ K MKQV+GTMKL+LAQY+EVAAFAKFGSDLDA+TQQQLNRGVRLYEL+KQDQY P+EVEEQV++LFAGV+G+IDR+DV +VT++EKAWLE +K +HS  IL  IK    E++ D+  KLSA+CDEF++S++
Sbjct:  311 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDVNGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQIKAMKQVSGTMKLDLAQYQEVAAFAKFGSDLDAATQQQLNRGVRLYELIKQDQYQPMEVEEQVLVLFAGVRGYIDRIDVAQVTSFEKAWLEFVKTNHSG-ILSEIKTKK-EISKDLDAKLSAICDEFSSSYS 540          
BLAST of mRNA_S-firma_M_contig914.20085.1 vs. uniprot
Match: A0A7S2BTT7_9STRA (ATP synthase subunit alpha n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BTT7_9STRA)

HSP 1 Score: 358 bits (919), Expect = 9.570e-119
Identity = 187/233 (80.26%), Postives = 211/233 (90.56%), Query Frame = 1
Query:    1 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGDAAGNGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQRKCMKQVAGTMKLELAQYREVAAFAKFGSDLDASTQQQLNRGVRLYELLKQDQYVPLEVEEQVVILFAGVKGFIDRVDVDKVTAYEKAWLEHIKASHSSDILEGIKKDNYELTDDMQKKLSAVCDEFTTSFTN 699
            QMSLLLRRPPGREAYPGDVFYLHSRLLERAAK+ DA G GSLTALP+IETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQ K MKQV+GTMKL+LAQ+ EVAAFAKFGSDLDA+TQQQLNRGVRL ELLKQDQYVP E EEQVVILFAGV+G+IDRVDV +V A+EKAWL+ IK SH  D+L  IK+   E+T ++ +KLSA+CD+F+++F++
Sbjct:  330 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDALGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQIKAMKQVSGTMKLDLAQFTEVAAFAKFGSDLDAATQQQLNRGVRLQELLKQDQYVPYEAEEQVVILFAGVRGYIDRVDVSQVQAFEKAWLDFIKLSHP-DVLSTIKEQK-EITKELDEKLSALCDDFSSNFSS 560          
BLAST of mRNA_S-firma_M_contig914.20085.1 vs. uniprot
Match: A0A8J2SM38_9STRA (ATP synthase subunit alpha n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SM38_9STRA)

HSP 1 Score: 357 bits (916), Expect = 1.260e-118
Identity = 183/232 (78.88%), Postives = 204/232 (87.93%), Query Frame = 1
Query:    1 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGDAAGNGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQRKCMKQVAGTMKLELAQYREVAAFAKFGSDLDASTQQQLNRGVRLYELLKQDQYVPLEVEEQVVILFAGVKGFIDRVDVDKVTAYEKAWLEHIKASHSSDILEGIKKDNYELTDDMQKKLSAVCDEFTTSFT 696
            QMSLLLRRPPGREAYPGDVFY+HSRLLERAAK+G  AG GSLTALP+IETQAGDVSAYIPTNVISITDGQIFLE+ELFYQGQRPAISVGLSVSRVGSAAQ K MKQV+GTMKL+LAQYREVAAFAKFGSDLD +TQQQLNRGVRLYELLKQ QYVPLE EEQVVILFAGV+G+ID VDV  +  YEKAWLEH+K+SH   +++ I  D Y ++D  ++KL A C+ FT  F+
Sbjct:  303 QMSLLLRRPPGREAYPGDVFYIHSRLLERAAKMGKMAGEGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLENELFYQGQRPAISVGLSVSRVGSAAQVKAMKQVSGTMKLDLAQYREVAAFAKFGSDLDPATQQQLNRGVRLYELLKQAQYVPLECEEQVVILFAGVRGYIDAVDVSAIQDYEKAWLEHVKSSHGG-LIKAIVDDGYVISDATEEKLGAACEAFTAQFS 533          
BLAST of mRNA_S-firma_M_contig914.20085.1 vs. uniprot
Match: F0YIV3_AURAN (ATP synthase subunit alpha n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIV3_AURAN)

HSP 1 Score: 353 bits (907), Expect = 9.690e-118
Identity = 182/232 (78.45%), Postives = 205/232 (88.36%), Query Frame = 1
Query:    1 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGDAAGNGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQRKCMKQVAGTMKLELAQYREVAAFAKFGSDLDASTQQQLNRGVRLYELLKQDQYVPLEVEEQVVILFAGVKGFIDRVDVDKVTAYEKAWLEHIKASHSSDILEGIKKDNYELTDDMQKKLSAVCDEFTTSFT 696
            QMSLLLRRPPGREAYPGDVFY+HSRLLERAAK+G AAG GSLTALP+IETQAGDVSAYIPTNVISITDGQIFLE+ELFYQGQRPAISVGLSVSRVGSAAQ K MKQVAGTMKL+LAQYREVAAFAKFGSDLD +TQQQLNRGVRLYELLKQ QY PLE EEQV+ILFAGV+G+ID VDV  +  YEKAWL+H+K SH  DI++ I  + + ++D  + KL  VC++FT +F+
Sbjct:  267 QMSLLLRRPPGREAYPGDVFYIHSRLLERAAKMGKAAGLGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLENELFYQGQRPAISVGLSVSRVGSAAQVKAMKQVAGTMKLDLAQYREVAAFAKFGSDLDPATQQQLNRGVRLYELLKQGQYQPLECEEQVIILFAGVRGYIDAVDVSAIQDYEKAWLDHVKTSHP-DIMKTIVGEGFVISDATEAKLGKVCEDFTAAFS 497          
BLAST of mRNA_S-firma_M_contig914.20085.1 vs. uniprot
Match: A0A482SHI5_9ARCH (H(+)-transporting two-sector ATPase n=2 Tax=cellular organisms TaxID=131567 RepID=A0A482SHI5_9ARCH)

HSP 1 Score: 348 bits (892), Expect = 9.720e-116
Identity = 179/232 (77.16%), Postives = 201/232 (86.64%), Query Frame = 1
Query:    1 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGDAAGNGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQRKCMKQVAGTMKLELAQYREVAAFAKFGSDLDASTQQQLNRGVRLYELLKQDQYVPLEVEEQVVILFAGVKGFIDRVDVDKVTAYEKAWLEHIKASHSSDILEGIKKDNYELTDDMQKKLSAVCDEFTTSFT 696
            QMSLLLRRPPGREAYPGDVFYLHSRLLERAAK+GDA G GSLTALP+IETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQ K MKQVAGTMKLELAQYREVAAFAKFGSDLD STQ+QLNRGVRLYELLKQ QY P+E+E+ VV LF GVKGF DRVDV KV+ + KAWL  IK +H   +++ + K+ + +T D++  +  + +EFT S+T
Sbjct:  246 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMGDALGAGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQVKAMKQVAGTMKLELAQYREVAAFAKFGSDLDPSTQKQLNRGVRLYELLKQGQYQPMEMEDIVVTLFIGVKGFADRVDVAKVSDFAKAWLSFIKTNHKEKVIDAMIKEKFTITKDIEATMIKLAEEFTASYT 477          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig914.20085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZI5_9PHAE2.560e-15097.00ATP synthase subunit alpha n=2 Tax=Ectocarpus TaxI... [more]
A0A836CH44_9STRA1.680e-13386.15ATP synthase subunit alpha n=2 Tax=Tribonema minus... [more]
A0A6V2WS15_HETAK1.990e-12382.33ATP synthase subunit alpha n=1 Tax=Heterosigma aka... [more]
A0A6U4D8B6_9STRA8.370e-12382.83ATP synthase subunit alpha n=1 Tax=Phaeomonas parv... [more]
A0A7S3I9N8_9CILI5.820e-12280.70Hypothetical protein (Fragment) n=1 Tax=Fabrea sal... [more]
A0A7S2W4M6_9STRA1.360e-11979.74ATP synthase subunit alpha n=1 Tax=Rhizochromulina... [more]
A0A7S2BTT7_9STRA9.570e-11980.26ATP synthase subunit alpha n=1 Tax=Dictyocha specu... [more]
A0A8J2SM38_9STRA1.260e-11878.88ATP synthase subunit alpha n=1 Tax=Pelagomonas cal... [more]
F0YIV3_AURAN9.690e-11878.45ATP synthase subunit alpha n=1 Tax=Aureococcus ano... [more]
A0A482SHI5_9ARCH9.720e-11677.16H(+)-transporting two-sector ATPase n=2 Tax=cellul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig914contigS-firma_M_contig914:24374..26688 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score436.0
Seed ortholog evalue1.1e-119
Seed eggNOG ortholog2880.D8LJM3
Preferred nameatp1
KEGG koko:K02132
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko01100,ko04714,ko05010,ko05012,ko05016,map00190,map01100,map04714,map05010,map05012,map05016
KEGG ModuleM00158
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0016020,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.proton-transporting ATP synthase activity, rotational mechanism
EggNOG OGsCOG0056@1,KOG1353@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Hectar predicted targeting categoryother localisation
Exons4
Model size702
Cds size699
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig914.20085.1prot_S-firma_M_contig914.20085.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig914 24374..26685 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828740.4445348-CDS-S-firma_M_contig914:24373..244811622828740.4445348-CDS-S-firma_M_contig914:24373..24481Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig914 24374..24481 -
1697105133.9939878-CDS-S-firma_M_contig914:24373..244811697105133.9939878-CDS-S-firma_M_contig914:24373..24481Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig914 24374..24481 -
1622828740.467363-CDS-S-firma_M_contig914:25178..252861622828740.467363-CDS-S-firma_M_contig914:25178..25286Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig914 25179..25286 -
1697105134.0074112-CDS-S-firma_M_contig914:25178..252861697105134.0074112-CDS-S-firma_M_contig914:25178..25286Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig914 25179..25286 -
1622828740.4810045-CDS-S-firma_M_contig914:25994..262701622828740.4810045-CDS-S-firma_M_contig914:25994..26270Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig914 25995..26270 -
1697105134.0176005-CDS-S-firma_M_contig914:25994..262701697105134.0176005-CDS-S-firma_M_contig914:25994..26270Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig914 25995..26270 -
1622828740.4979367-CDS-S-firma_M_contig914:26478..266851622828740.4979367-CDS-S-firma_M_contig914:26478..26685Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig914 26479..26685 -
1697105134.0270345-CDS-S-firma_M_contig914:26478..266851697105134.0270345-CDS-S-firma_M_contig914:26478..26685Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig914 26479..26685 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828740.5122833-UTR-S-firma_M_contig914:26685..266881622828740.5122833-UTR-S-firma_M_contig914:26685..26688Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig914 26686..26688 -
1697105134.03911-UTR-S-firma_M_contig914:26685..266881697105134.03911-UTR-S-firma_M_contig914:26685..26688Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig914 26686..26688 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig914.20085.1

>prot_S-firma_M_contig914.20085.1 ID=prot_S-firma_M_contig914.20085.1|Name=mRNA_S-firma_M_contig914.20085.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=233bp
MSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGDAAGNGSLTALPIIETQ
AGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGSAAQR
KCMKQVAGTMKLELAQYREVAAFAKFGSDLDASTQQQLNRGVRLYELLKQ
DQYVPLEVEEQVVILFAGVKGFIDRVDVDKVTAYEKAWLEHIKASHSSDI
LEGIKKDNYELTDDMQKKLSAVCDEFTTSFTN*
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mRNA from alignment at S-firma_M_contig914:24374..26688-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig914.20085.1 ID=mRNA_S-firma_M_contig914.20085.1|Name=mRNA_S-firma_M_contig914.20085.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=2315bp|location=Sequence derived from alignment at S-firma_M_contig914:24374..26688- (Sphaerotrichia firma Sfir_13m male)
CAGATGTCGCTGCTGCTCCGCCGTCCCCCCGGCCGCGAGGCCTACCCGGG AGACGTGTTCTACCTGCACTCCCGTCTGCTGGAGCGCGCGGCCAAGCTGG GCGACGCCGCCGGCAACGGGTCCCTGACGGCCCTGCCCATCATCGAGACC CAGGCCGGTGACGTGTCGGCGTACATCCCCACCAACGTGATCAGTATCAC GGACGGCCAGGTGTGTAATTGCGCGCGTGCTGGTTTGTTTGTGCGGGCAT CGTTTTTGTTGTTGTTGTTGTTGTTGTTGTTGTCATGGCCGCGAAAGGCG GCGAAATATGTTGACCCCCTCCCGTTCGCAACTCGGCGCTACGTCACCCC CCTCCGCACCTCTCGACATTTCGACATGGTATGTACGAATTTCTGAAATC ACTCTGTCAATACCGCAGATCTTCCTGGAGTCCGAGCTCTTCTACCAGGG CCAGCGCCCCGCCATCTCCGTGGGTCTCTCCGTGTCCCGCGTCGGGTCCG CGGCCCAGCGCAAGTGCATGAAGCAGGTGGCGGGCACCATGAAGCTGGAG CTGGCCCAGTACCGTGAGGTGGCCGCGTTCGCCAAGTTCGGGTCCGACCT CGACGCCTCGACCCAGCAGCAGCTCAACCGGGGGGTGCGGCTGTACGAGC TGCTCAAGCAGGACCAGTACGTGCCGCTCGAGGTGGAGGAGCAGGTAATT TTGTGTGTGTGTGTGTGTGTGTGTTTTTTTTTCTGTCCGTTTTGCGCCGA CCGCGCTGACGAACTGGTGGACCAATGAAAAGAAAGACGGACCAGTACTC TTTTTCTAAAGGGTTTGGGGGGTACTCCTTGATGAGTTCTTTTGGAGATG TGGGTACGTGTTTTCACGCGAGTCGACCATGCCAACCGGCTGATGAGTGA AGAGGCGTCCCTCTTGCCATACAAGGAAATTAAGAGACGTAATGGGGGAT ACATACGTAAGTCCATTGAGGCTCATCCACCGGGCCGAAAGGAAGCTTTG GTGTGTGCGATTTTCTCTGCGAGCTTGCTCGAGCACAAGAGCTACAATAG GCTAATTTAGCTGCGCGAACACAATTTAGGCAGAGCTGAACAAACGGTCG GAAACGAGGAGGGGGCTGGGGGGTGGACGCGGGGGATTCTGAAGGGAAAC GCCTCCCACACTCGGTTGACTGCTCTTCTCGGCACCTTTAGCGGCAAAAG CAAGCGTTGAGCGGGCTCGTGAAATGATTTTGTGGTGCACCCGTGTATCC TACCCATCCTTTTTCTCGGTGTGTGCTTGCTCTCTTTAGCGTGGCACGCA GACATTTGTTTCTGTTTTGTGGCGCTGAAAGCACTTTTGTTTTTTACCTC CATCTGTGTGCATTTGATGCGCACGGCCGTCTATCCATCTGTCCATCCCC AGGTGGTGATCCTCTTCGCCGGCGTGAAGGGCTTCATCGACCGCGTGGAC GTGGACAAGGTGACCGCCTACGAGAAGGCATGGCTGGAGCACATCAAGGC CTCGCACTCGGTGAGTTTTTGCCCGTTATTTTGTTCGGAGTAGACTAGCC TGGTTGTAATATTGACTTGTGATTCGCTTCCTTCAGAGTCCCTCGGTGTT TTCGGGTTTTGATCCACCGGGCCGCTTTCGACGCGACGAACAAAAGCCAA AGCGGGAAAGCGGTGTTCCAAATCGACCAATCACGTCCTCTTTCTGTTCC AGGCAGCGTAGTATGTACGTTTTCGTGTGTGTGCTGTGCTGTGCTGTGCT GTGCTGGAGTTTTCATCAATTGTCTCAAAACAGTTTTTTTTTTTTTTGCT GTCCGGAACACGTTTTCTCCCATCGTACCAAAGCATGTACTAACGCATGG TTGATAACCGATTGATCGCCTCGTTGAAAGAATAACCATGAAAGCGACGG GCGTATTCTGTGTTTTTGGCCGAAAGCGGCAAACGCTTGATGTGTTTTGG CCGAGACGCTTGTTTTCTTTGGCGGACCACCTGGTTTCTAATTGGGTTCG TTCCTGCGTCGTGTTTGTTGAGCTGTGTTACGTTTGGTTGCCTTTTCTGA CGGCGGACAAAGCTTGTGCTATCCCTGTATAACCTGGTTGGTACAGCAGC ATGTTCTGACAATGTCCTTTTTTTACACCCCTCGTCCCTGTGTTTCCGCG ATGATACGACGGCTGGTGTTGTGGTGCGACTGCACGATGTGTGAACCTCG AAAATAGTCGGACATCTTGGAGGGCATCAAGAAGGACAACTACGAGCTGA CCGACGACATGCAGAAGAAGCTTTCGGCGGTCTGCGACGAGTTCACGACC TCCTTCACCAACTAG
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Coding sequence (CDS) from alignment at S-firma_M_contig914:24374..26688-

>mRNA_S-firma_M_contig914.20085.1 ID=mRNA_S-firma_M_contig914.20085.1|Name=mRNA_S-firma_M_contig914.20085.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1398bp|location=Sequence derived from alignment at S-firma_M_contig914:24374..26688- (Sphaerotrichia firma Sfir_13m male)
ATGTCGCTGCTGCTCCGCCGTCCCCCCGGCCGCGAGGCCTACCCGGGAGA
CGTGTTCTACCTGCACTCCCGTCTGCTGGAGCGCGCGGCCAAGCTGGGCG
ACGCCGCCGGCAACGGGTCCCTGACGGCCCTGCCCATCATCGAGACCCAG
GCCGGTGACGTGTCGGCGTACATCCCCACCAACGTGATCAGTATCACGGA
CGGCCAGATGTCGCTGCTGCTCCGCCGTCCCCCCGGCCGCGAGGCCTACC
CGGGAGACGTGTTCTACCTGCACTCCCGTCTGCTGGAGCGCGCGGCCAAG
CTGGGCGACGCCGCCGGCAACGGGTCCCTGACGGCCCTGCCCATCATCGA
GACCCAGGCCGGTGACGTGTCGGCGTACATCCCCACCAACGTGATCAGTA
TCACGGACGGCCAGATCTTCCTGGAGTCCGAGCTCTTCTACCAGGGCCAG
CGCCCCGCCATCTCCGTGGGTCTCTCCGTGTCCCGCGTCGGGTCCGCGGC
CCAGCGCAAGTGCATGAAGCAGGTGGCGGGCACCATGAAGCTGGAGCTGG
CCCAGTACCGTGAGGTGGCCGCGTTCGCCAAGTTCGGGTCCGACCTCGAC
GCCTCGACCCAGCAGCAGCTCAACCGGGGGGTGCGGCTGTACGAGCTGCT
CAAGCAGGACCAGTACGTGCCGCTCGAGGTGGAGGAGCAGATCTTCCTGG
AGTCCGAGCTCTTCTACCAGGGCCAGCGCCCCGCCATCTCCGTGGGTCTC
TCCGTGTCCCGCGTCGGGTCCGCGGCCCAGCGCAAGTGCATGAAGCAGGT
GGCGGGCACCATGAAGCTGGAGCTGGCCCAGTACCGTGAGGTGGCCGCGT
TCGCCAAGTTCGGGTCCGACCTCGACGCCTCGACCCAGCAGCAGCTCAAC
CGGGGGGTGCGGCTGTACGAGCTGCTCAAGCAGGACCAGTACGTGCCGCT
CGAGGTGGAGGAGCAGGTGGTGATCCTCTTCGCCGGCGTGAAGGGCTTCA
TCGACCGCGTGGACGTGGACAAGGTGACCGCCTACGAGAAGGCATGGCTG
GAGCACATCAAGGCCTCGCACTCGGTGGTGATCCTCTTCGCCGGCGTGAA
GGGCTTCATCGACCGCGTGGACGTGGACAAGGTGACCGCCTACGAGAAGG
CATGGCTGGAGCACATCAAGGCCTCGCACTCGTCGGACATCTTGGAGGGC
ATCAAGAAGGACAACTACGAGCTGACCGACGACATGCAGAAGAAGCTTTC
GGCGGTCTGCGACGAGTTCACGACCTCCTTCACCAACTAGTCGGACATCT
TGGAGGGCATCAAGAAGGACAACTACGAGCTGACCGACGACATGCAGAAG
AAGCTTTCGGCGGTCTGCGACGAGTTCACGACCTCCTTCACCAACTAG
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