mRNA_S-firma_M_contig913.20080.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig913.20080.1
Unique NamemRNA_S-firma_M_contig913.20080.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig913.20080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig913contigS-firma_M_contig913:19208..24961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size281
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828739.8184667-CDS-S-firma_M_contig913:19207..193451622828739.8184667-CDS-S-firma_M_contig913:19207..19345Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig913 19208..19345 +
1697105133.5316498-CDS-S-firma_M_contig913:19207..193451697105133.5316498-CDS-S-firma_M_contig913:19207..19345Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig913 19208..19345 +
1622828739.8342373-CDS-S-firma_M_contig913:24820..249611622828739.8342373-CDS-S-firma_M_contig913:24820..24961Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig913 24821..24961 +
1697105133.5492754-CDS-S-firma_M_contig913:24820..249611697105133.5492754-CDS-S-firma_M_contig913:24820..24961Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig913 24821..24961 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig913.20080.1prot_S-firma_M_contig913.20080.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig913 19208..24961 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig913.20080.1

>prot_S-firma_M_contig913.20080.1 ID=prot_S-firma_M_contig913.20080.1|Name=mRNA_S-firma_M_contig913.20080.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=93bp
SSSSGSTATAADVWAAFHAVRRSYRGPMAVGQTRGSRDDAAGFDAQGMVA
VDHLLAALKSVSGTLSAAAAASTTAPEIISLRRQVDRAASLAE
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mRNA from alignment at S-firma_M_contig913:19208..24961+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig913.20080.1 ID=mRNA_S-firma_M_contig913.20080.1|Name=mRNA_S-firma_M_contig913.20080.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=5754bp|location=Sequence derived from alignment at S-firma_M_contig913:19208..24961+ (Sphaerotrichia firma Sfir_13m male)
TCATCCTCCTCGGGTTCCACGGCCACGGCCGCCGATGTGTGGGCCGCTTT
TCACGCCGTCCGGCGGTCGTACCGCGGCCCGATGGCGGTCGGGCAAACCC
GAGGATCTCGAGACGACGCCGCAGGTTTCGATGCTCAGGTAAGGTTCAAA
AGTGTTTTTTATTTTTTTATTTGACAGCAGTTTTGTGCCTTTTGGTGGAG
TATGCCGATCGCTCTCCCTGAGTTGACCTCTTTTTTTCAAGCTTTTTTTT
TTGCGTCGGAGGAATGCCACCTTTGAGCGTGAACCCGTGTTGTGTGATTG
TGACGGGGCCTTTGGTATTGCTTCGTCATTGGTGAGACACGTTTATCGTC
TTGGTGTTTGCTTGGTGGTGGAGGCAGCCATGTTGTGGTACGGCGGACGG
TGTGCACGTTATCCGTTGTTTGCGGCACGTTGTCCCTAGGCTGTCACGCA
CGACCGTGTCTGATTTTTTCGTTGGAAGGCCATCAGCCTCCAGCAGCAAA
TGGCAGCAGAAGCGGTGGCTGTGTTGGCTCCGCAAAAGCCGCACCGTACG
CAGTCCACCTCCTTATGAAAAACGAACGCAATGCCTACATCACGTCGGCG
GTCATGTACACATGCCGTCGTGCCCGAATGTTTGAGACCGTCGCTCGCAC
ACCTCCGGGCGATCGTTATAGGAATTTCGAGCACATTTACCCCAGAGCAC
CAAGTAGCAGCTCTTCCCAGCTGCGTTTTTTTTTGCGACAAAAAGAGCCG
AGGTTGCTGCGGTCGCACGTGTCCAACAGCAGACATTATTATAGTCGTGG
TGGCCTATAGACGTGGGTGGTGTGATCCAGTTTTTTTGTTCCGTCATCCA
CCGCGGATGCTGCTGCTGCTTCGAGGCATGTTTGCGGTGCTTTTCGCGTC
TTTTTTGTTGACTTCTTGGGCACGCGTTTAGCCCTGCGCATGACGAACAT
ATTTTGTTGGGGTGCTATCATAGCTCTGTCTCCAGCCCACTGACCGCTCG
AGACCCCCGCACATCGGACGTTCGACAACGAGCTCCGCTGTCCTTGCCGA
CGCGCTCTCATAAGCCTCGGTGCTTGTGCGCCGTTGTCGGTGGCGGGGTC
GTTAAGCCCCCCCCCTGGATTGGCACGGCTGTGTAGTGTGCAGCTTGGCT
GTATGGCCAGGTACGGCATCGAAAGCAGGGACTTTTGGACCTGATCACAG
CCTCTGTTGGTAGCGTCCACTGTGGCTGGTATGGCCCCCCACCGCGGAAG
CTGCTATCGAGGCAGTGAAACTGGACGGGTCCAAATTGTCTTTTATTATT
TTGTCCACGTTCTGGGCACGTATTGTAGTCAACCGAGTGCGTGACACGCT
CACACTCCTCATGCGAAGGTGCTGTCGTGTGGTTGCCGTCCGAATGGGTG
TCGATGGCTTGGGGTGTTTTCTCGTTTTTTTTTTTTTTGTAAGCGCTCTC
TCAAGGTCACCCACCCACCGCTCGAGACCCTTGCACAACTTGTTTTTTGT
TCTCACGAGCTCCGCGATCGGAACCGATGCGTCCTGGAAAGCCGTGACGA
GCCAGAAAGCTCCCTTTTCCTTCAAACGAGCACGCGCGTGCGATTTTGAT
ATTTTTTAGGCACCTGCCGGCCGCATCAAGTGGCAGGAACCTGAGGGTTG
TGAACGTGATTATTGGGGGCAGTCAAGGCCGAGCGTAGTGTGACCGACTT
CGTCGGTCCCGCCACCCGCAGCGATTGCGTCTTCGATGACACGTGACAGC
TCTGTGGTGCCCGCACTTGTGATGCTCAGACCAGTGCGTGTGCCCCCCCC
TACCCCCCGCGGTACATGTCGCGTCCGCTTGACAAACACTGCAGCCGAGC
GACGTTTTTTTTTTATTGTTGTCCTCGGCGGTCGTCGTTGCGGGCTCTCT
TTCTGTCGTCGCAGGCGTTTCCTCGTGTCCATCGCTAAGTTAGGCTCGCC
GACGTTGTTATTTTTAAAATTATTATTATTATTATTTTACTTCAAGTAGT
TTTTTTTTTTACGTTTGCGGTGACCAGTCGTTTGGCCTTTCCCCCCTGTG
GGCGGGGGGTAAATCCAGGCCGCGTCGTCGGCGGGTGGCGGCATTCAAAG
CGCAGGGACGGGGCCGTAAACGTAGTTTCGGCTCAATTTGTGGGTGCTGT
GTTCGGCGTGACCCAGTTTGTTGGTCTCGCCGTCCACCGCGACCGCGAGC
GACGGCCGAAGCATCGTTTCACACCCTTTTTCTTGTTCTCGTTTTTGTCC
CCGTCCTGGCCGAGTTAAACCGGCACGTCCGTTTGATAAGAATCCGCGGT
AGCGTTGTATGCCAAACGCAGGTTGGCAGAGTGAGGGGTTTCGTCTTGGG
CGGTTGTCGATGGTGATGTCGATGTCGACGTGTGCACGCTCGTGTCGTCG
CGAAGATTTCCTCTACCGAGCCCGGTTTTGTTTGACGTATGATACACTGC
GTGTCGCAGTTGTGCCGTTTGGAACCGTGCTGGACACGGGAGATGGGGTC
ACGACGGCAGGACAGACGCCCGCGTTTGGACATTATTTTCGCGCTTGCAG
CGGCATGAGCGGGGAAGAGAACGTTGCCCCTACGGCCCCGCAACCCACGG
CTCGCGGAACTAACGCCGCGTGGCGTGATGCCACCCCCTGGGAGCGGATA
TTAAATGCGTCAAAATTGTCTCCTGTGATTTGGTCCACCTCCTGGACACG
TATTGTAGTCAACCGAGTGCGTGACACGCTCACACACCTCATGCGGAGGT
GTTGTTGCCGTCCTAGTGGGTGTCGATGGCTTAAGTTTGTTTTTTCGTTT
CTTGTTGCAAGCGCTCTCTCAAGGTCACCTACCCACCGCTCGAGACCCTT
TGACAACGTTTGTTGTTGTTCTCACGAGCTCCGCGATCGGAACCGATGCG
TCCTGGAAAGCCGTGACGAGTCAGAAAGCTCCCTACATATTCCTTTAAGC
GAGCACGCGCGTGAGATTTTGGCTTTTGTTAGCCAGCTGCCGGCCGGATC
AAATGGCAGGAACCTGAGGAGTGTGAACGTGGTTGTTGGGGACAGCAGTA
AAGGCCGAGCGTAGTGTGACCGACTTAGTCGGTCCCGCCACCCGCCGCGA
TTGCGCCTTCGATGAAACGTACGTGACAGCTCTGTGGTGCCCGCACTTGT
GATGCGCAGACTAGTGCGTGTTGCCCCGCGGTACATGTCGCGCCCGCTTG
ACACACTGACACGCACTGCAGCCGAGCGACGTTTTTGCTTGTTTCTTCTC
GGTGGGCGTCGTTGCGCGCTTTCTTTCGGTCGTCGCAGACGTTTCCTCGT
GCCCACCTCTCAAATTGGCTCTTTGACGTCATGATCATGTTGTGTTGTTG
TTGTATTTTCATTATTATTATTCTTATTATTCTTCGACGTTTCCGGTGAC
CAGTTGTTTGGCCTTCCCCCGCTGTGGGCGGGCGTTAAAGACAGGCCGCG
TTGTCGGGGATAGGGTCAGGCGGCATTCAAGGCATTCAAAGCGCAGGGAC
GGGACCGTAAACGTAGCTATGGACCTATGTGGTGCTGTGTTCGGCGTCAC
CCAGTTTGCTGGCTTCGCCGCCCACCGCGACCGCGACGGCCGAAGCATCG
TTGCGGCCTCGTGATCTGGCGTTTTTGGCCCCGCCCTGGCCGAGATATCC
GGGCACGTGCGTTTGATCAGAACCCGCGGTACGGTAGCGTTGTACGCCAA
ACGGAGGTCGGCAGAGTGAGGGGTTTCGTCTTGGGCGGTTGTCGATGTTG
ATGTCGATGTCGACGTGTGCACACTCGTGTCGTCGCGAAGATTTCCGAGC
CCGGTTTTGTTTGACGTATGCACACTGCGTGTCGCAGTTGTGCCGTTTGG
AACCGTGCTCGACACGGGAGATGGGGTCACGACGGCAGGATAGACGCCCG
CGTTTGGACATTCTTTTCGCGCTTCCAGCGGCATGAGCGGGGGAGAAAAC
GTTGCCCCTACGCCCGCGCGACCCACGGCTCGCGGAACTAACGCCGTATG
GCGTGTTCGCATTCCCCGGGAGCGGATATTAAATGCGTCAAAATTGTCTC
CTGTGACTTTGTCCACGTCCTGGGCACGTATTGTAGTCAGCCGAGTGCGT
GACACGCTCACACACCTCATGCGAAGGTGCTGTCGTCGTGTTGTTGCCGT
CCTATCATAGTGGGTGTCGATGGCTTGGGGTGTTTATTTATTCTTGTTGC
AAGCGCTCTCTCAAGGTCACCTACCCACCGCTCGAGACCCTTGCACAACT
TTTTTTTTGTACTCACGAGCTCCGCGATCGGAACCGATGCGTCCTGGAAA
GCCGTGACGAGTCAGAAAGCTCTCTATATTTTCCTTGTAAAGAGCACCCG
CGTGAGATTTTGGCGTTTGTTAGCCAGCTGCCGGCCGCATCAAGTGGCAG
GAACCTGAGGGGTGTTAACGTGTTTTTGGGGGAGAGTAAAGGCCGAGCGT
AGTGTGACCGACTTACTCGGTCCCGCCACCCGCCGCGATTGCGTCCTCGA
TGAAACGTACGTGACAGCTCTGTGGTGCCCGATGCGCAGACTACTTTAGT
GCGTGTTGCCCCGCGGTACATGTCGCGCCCGCTTGACACACTGACACACA
CTGCAGCCGAGCGACTTTTTTGTTTTTTTGTTGTCCTCGATGGTCGTCGT
TGCGGGCTCTCTTTCTGTCGTCGCAGACGTTTCCTCGTGCCCACCTCTAA
GTTAGGCTCGCCGACGTTATTTTGAAAATTATTATTATTGTTATTTTTTT
ACTTCAAGTTATTACTTTTTTTTGGACGTTTCCGGTGACCAGTCGTTGGG
CCTTTTCCCCCTGTGGGCGGGCGTTAAATCCAGGCCGGTTTGTCAGCGGT
TGGCGGCATTCAAAGCGCAGGGAAAGGGCCGTAATCGTGGTTTCGGCGCT
GTTCGGTGGTGCTGTGCCCGGCGTCACCCAGTGTGTTGGTCTCGCCGTGC
ACCGCGACCCCGACGGCCGAAGCATCGTTGCTGACCTTCCCCGTCCTGGC
GTCCTCGCCGAGCCATTCCGGCATGTGCGTTTGATGATAACCCGCGGTAC
TGTAGCGTTGTACGCCAAACGCAGGTCGGCAGAGTGAGTGGGTACGTCTT
GTGTGGCTGTCGATGTTGATGTTGATGTCGATGTCGACGTGTGCACACTC
GTGTCGTCGCGAAGATTTCCTTTGCCGAGCCCGGTTTTGTTTGAAGTATG
TACACTGCGTGTCGCAGTTGTGCCGTTTGGAACCGTGCTCGACACGGGAG
ATGGGTCACGACGGCAGGATAGACGCCCGCGTTTGGACATTCTTTTCGCG
CTTGAAGCGGCATGAGCGGGGGAGAGAACGTTGCCCCTACGGCCGCGCAA
TCCACGGCACGCGGAAATAACGCCGCATGGCTTGATAGGAGCGGGTTCTA
AATGTGACCCTCTTTTTTAAGCTGGGATCAGTCAGCCATTCGGTGTGTTG
CTTTGAGGAACGAACGCTTTTCCGTTTGACGAGTGAGTGCGGAGACACTG
CTTGTTGATTCTCCCGGCCCTGACGCCACCCGCTGCTTTCTTTTCTTTTT
TTTATCGCCCCCCTTGTGTGTCTCGTTTTTGGCGTCAGGTGGCTTGGCCC
GCCGCCAACTCAGGGGATGGTGGCGGTGGATCACCTGCTCGCTGCGCTCA
AGTCCGTGTCCGGGACGCTATCAGCTGCAGCAGCAGCATCGACGACAGCA
CCCGAAATTATTTCTCTGAGACGTCAAGTGGATCGAGCGGCAAGCCTGGC
TGAG
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Coding sequence (CDS) from alignment at S-firma_M_contig913:19208..24961+

>mRNA_S-firma_M_contig913.20080.1 ID=mRNA_S-firma_M_contig913.20080.1|Name=mRNA_S-firma_M_contig913.20080.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=558bp|location=Sequence derived from alignment at S-firma_M_contig913:19208..24961+ (Sphaerotrichia firma Sfir_13m male)
TCATCCTCCTCGGGTTCCACGGCCACGGCCGCCGATGTGTGGGCCGCTTT
TCACGCCGTCCGGCGGTCGTACCGCGGCCCGATGGCGGTCGGGCAAACCC
GAGGATCTCGAGACGACGCCGCAGGTTTCGATGCTCAGTCATCCTCCTCG
GGTTCCACGGCCACGGCCGCCGATGTGTGGGCCGCTTTTCACGCCGTCCG
GCGGTCGTACCGCGGCCCGATGGCGGTCGGGCAAACCCGAGGATCTCGAG
ACGACGCCGCAGGTTTCGATGCTCAGGGGATGGTGGCGGTGGATCACCTG
CTCGCTGCGCTCAAGTCCGTGTCCGGGACGCTATCAGCTGCAGCAGCAGC
ATCGACGACAGCACCCGAAATTATTTCTCTGAGACGTCAAGTGGATCGAG
CGGCAAGCCTGGCTGAGGGGATGGTGGCGGTGGATCACCTGCTCGCTGCG
CTCAAGTCCGTGTCCGGGACGCTATCAGCTGCAGCAGCAGCATCGACGAC
AGCACCCGAAATTATTTCTCTGAGACGTCAAGTGGATCGAGCGGCAAGCC
TGGCTGAG
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