mRNA_S-firma_M_contig9128.20077.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9128.20077.1
Unique NamemRNA_S-firma_M_contig9128.20077.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
[Close]
BLAST of mRNA_S-firma_M_contig9128.20077.1 vs. uniprot
Match: D8LB29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB29_ECTSI)

HSP 1 Score: 296 bits (757), Expect = 4.340e-90
Identity = 157/262 (59.92%), Postives = 176/262 (67.18%), Query Frame = 1 
Query:    1 SQDGGLKIWDVRGSKEAAHYNSHYGAVRDIQFSPLQEFHFAAVFNNGKMQIWDYKFLQPKMKIASHNKSAFSVEWHHTVPGRLATTSDKSVKIWDL-----QRQPERQTATTM-----AMEQTLQPTIELASPGVVSRAKWRPGHHDQIATAQAP-LMGEKDFAMMVHDVNEPEIAHFALYGGDDKKNGFCWLDTPLGFSESSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREEDARAEWRG-MGVWQHLVSCSD 750
            SQDG LKIWD+R SK  A ++S YGAVRD+QFSPLQEFHFAAVF+NGK+QIWDYKF QPKMKIASH KSA SVEWH T+P RLATTSDK V+IWDL      RQ ++Q           MEQTL  TI L SPG+VSRAKWRPGH  QIATAQ P  +G+ D+A+MVHD+ +P + HFALYGGDDKKNGFCWLDTPL   ES G                                    EDA AEW G MGVWQH+VSCSD
Sbjct:  163 SQDGYLKIWDLRHSKAVATFDSRYGAVRDVQFSPLQEFHFAAVFDNGKLQIWDYKFKQPKMKIASHTKSALSVEWHRTLPWRLATTSDKVVEIWDLAPPAVDRQQQKQXXXXXQLQGPVMEQTLLSTITLRSPGMVSRAKWRPGHPTQIATAQVPPRLGDTDYAIMVHDITDPAVPHFALYGGDDKKNGFCWLDTPLNL-ESQGAPPSSFSSGVSGVAKARRVGAGGS-----------NEDANAEWSGGMGVWQHVVSCSD 412
[Close]
BLAST of mRNA_S-firma_M_contig9128.20077.1 vs. uniprot
Match: A0A6H5KXV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXV7_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.120e-25
Identity = 46/62 (74.19%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:  376 VSRAKWRPGHHDQIATAQAP-LMGEKDFAMMVHDVNEPEIAHFALYGGDDKKNGFCWLDTPL 558
            VSRAKWRPGH  QIATAQ P  +G+ D+A+MVHD+ +P + HFALYGGDDKKNGFCWLDTPL
Sbjct:   10 VSRAKWRPGHPTQIATAQVPPRLGDTDYAIMVHDITDPAVPHFALYGGDDKKNGFCWLDTPL 71
[Close]
BLAST of mRNA_S-firma_M_contig9128.20077.1 vs. uniprot
Match: A0A8J5A0K1_9CHEL (GATOR complex protein WDR24 n=1 Tax=Nymphon striatum TaxID=424472 RepID=A0A8J5A0K1_9CHEL)

HSP 1 Score: 102 bits (255), Expect = 3.240e-21
Identity = 61/187 (32.62%), Postives = 93/187 (49.73%), Query Frame = 1 
Query:    1 SQDGGLKIWDVRGSKEAAHYNSHYGAVRDIQFSPLQEFHFAAVFNNGKMQIWDYKFLQP-KMKIASHNKSAFSVEWHHTVPGRLATTS-DKSVKIWDLQRQPERQTATTMAMEQTLQPTIELASPGVVSRAKWRPGHHDQIATAQAPLMGEKDFAMMVHDVNEPEIAHFALYGGDDKKNGFCWLDTP 555
            SQDG +KI+D+R  +  + + S   +VRD+QFSP   F FAAV  NG +Q+WD++     + +  +H+   F+ +WH      LAT   DK++K+WD+  +P               P   + +   VSR KWRP    QIA++   +    DF++ V DV  P I + +     D   G  W   P
Sbjct:  125 SQDGTMKIFDLRKKEATSTFTSMSESVRDVQFSPFAYFQFAAVQENGNVQLWDWRRTDRCERQFTAHSGPVFACDWHPEEKNCLATAGRDKTIKVWDVVNKPV--------------PDFVIQTIASVSRIKWRPSRKLQIASSSLVV----DFSVNVWDVQRPYIPYASFTEHKDVTTGILWRKDP 293
[Close]
BLAST of mRNA_S-firma_M_contig9128.20077.1 vs. uniprot
Match: UPI00200DCB5F (GATOR complex protein WDR24 n=1 Tax=Leguminivora glycinivorella TaxID=1035111 RepID=UPI00200DCB5F)

HSP 1 Score: 98.6 bits (244), Expect = 9.180e-20
Identity = 64/194 (32.99%), Postives = 96/194 (49.48%), Query Frame = 1 
Query:    1 SQDGGLKIWDVRGSKEAAHYNSHYGAVRDIQFSPLQEFHFAAVFNNGKMQIWDYKFLQP-KMKIASHNKSAFSVEWHHTVPGRLATTSDKSVKIWDLQRQPERQTATTMAMEQTLQPTI-ELASPGVVSRAKWRPGHHDQIATAQAPLMGEKDFAMMVHDVNEPEIAHFALYGGDDKKNGFCWLDTPLGFSESS 576
            SQDG +K +D+R  + A  + S+  ++RD+QFSP Q   FAAV  NG +Q+WD +  +   ++  +H+   F+ +WH TVP     + DK++K+WD+  +P            TL+ TI  +AS G V   KWRP     +A+    L    D A+ V DV  P +         D      WL T   F  +S
Sbjct:  126 SQDGTMKCFDLRMKEVARTFISNTESIRDVQFSPHQAHTFAAVSENGSVQLWDVRRSERCVVQFTAHSGPVFACDWHPTVPALATASRDKTIKVWDIHAKP------------TLEHTIYTIASVGHV---KWRPHRKHHVASCALVL----DCAVHVWDVRRPHVPLATFAEHRDVATAVAWLPTFDAFLSTS 300
[Close]
BLAST of mRNA_S-firma_M_contig9128.20077.1 vs. uniprot
Match: UPI0003F06801 (WD repeat-containing protein 24 n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F06801)

HSP 1 Score: 98.6 bits (244), Expect = 9.290e-20
Identity = 68/197 (34.52%), Postives = 93/197 (47.21%), Query Frame = 1 
Query:    1 SQDGGLKIWDVRGSKEAAHYNSHYGAVRDIQFSPLQEFHFAAVFNNGKMQIWDY----KFLQPKMKIASHNKSAFSVEWHHTVPGRLATTS-DKSVKIWDLQRQPERQTATTMAMEQTLQPTIELASPGVVSRAKWRPGHHDQIATAQAPLMGEKDFAMMVHDVNEPEIAHFALYGGDDKKNGFCWLDTPLGFSESS 576
            SQDG +KI+D+R  +    +N    +VRD+QF   Q F FAA F NG +Q+WD     KF Q   +  +HN  AFS++ H      LAT   DKS+KIWDLQ +P             L  T++  +P  V+R KWRP     I++    +    D  + V D+  P I         D   G  W   P  F  +S
Sbjct:  151 SQDGLMKIFDLRKKEATITFNGQSESVRDVQFMQFQYFSFAAAFENGNIQLWDIRRADKFYQ---QFTAHNGPAFSLDGHPEERQWLATAGRDKSIKIWDLQFKP------------VLMHTVQTIAP--VTRVKWRPQRKFHISSCSLVI----DHTINVWDIRRPYIPFATFEEHKDVATGVVWRHDPHIFLSAS 326
[Close]
BLAST of mRNA_S-firma_M_contig9128.20077.1 vs. uniprot
Match: S4P4K8_9NEOP (GATOR complex protein WDR24 (Fragment) n=2 Tax=Pararge aegeria TaxID=116150 RepID=S4P4K8_9NEOP)

HSP 1 Score: 95.5 bits (236), Expect = 1.390e-19
Identity = 61/193 (31.61%), Postives = 95/193 (49.22%), Query Frame = 1 
Query:    1 SQDGGLKIWDVRGSKEAAHYNSHYGAVRDIQFSPLQEFHFAAVFNNGKMQIWDYKFLQPKM-KIASHNKSAFSVEWHHTVPGRLATTSDKSVKIWDLQRQPERQTATTMAMEQTLQPTIELASPGVVSRAKWRPGHHDQIATAQAPLMGEKDFAMMVHDVNEPEIAHFALYGGDDKKNGFCWLDTPLGFSESS 576
            SQDG +K +D+R  + A  + S+  ++RD+QFSP Q   FAAV  NG +Q+WD +  +  + +  +H+   F+ +WH  VP     + DK++K+WD+  +P         +E T+     +AS G V   KWRP    Q+A+    L    D A+ V DV  P +         D      W  +P  F  +S
Sbjct:  126 SQDGMMKCFDLRMKEVARTFISNTESIRDVQFSPHQAHVFAAVSENGTVQLWDARRHERALHQFTAHSGPVFACDWHPEVPWLATASRDKTIKVWDIHARPN--------LEHTI---YTIASVGHV---KWRPQKRFQVASCALVL----DCAVHVWDVRRPHVPLATFAEHRDVTTAIAWQASPHAFLSTS 300
[Close]
BLAST of mRNA_S-firma_M_contig9128.20077.1 vs. uniprot
Match: A0A7R9H6C9_TIMCR (GATOR complex protein WDR24 (Fragment) n=1 Tax=Timema cristinae TaxID=61476 RepID=A0A7R9H6C9_TIMCR)

HSP 1 Score: 97.4 bits (241), Expect = 1.980e-19
Identity = 60/197 (30.46%), Postives = 94/197 (47.72%), Query Frame = 1 
Query:    1 SQDGGLKIWDVRGSKEAAHYNSHYGAVRDIQFSPLQEFHFAAVFNNGKMQIWDYKFLQPK---MKIASHNKSAFSVEWHHTVPGRLATTSDKSVKIWDLQRQPERQTATTMAMEQTLQPTIELASPGVVSRA--KWRPGHHDQIATAQAPLMGEKDFAMMVHDVNEPEIAHFALYGGDDKKNGFCWLDTPLGFSESS 576
            SQDG ++++D+R  +    Y+S+  +VRD+QFSP Q + F AV  NG +Q+WD +  +P     +  +H+   F+ +WH   P     + DK++K+WDL                +++PT+E   P + S    KWRP     IA+    +    D  + V DV  P I + A     D   G  W   P  F  +S
Sbjct:  102 SQDGTMRLFDLRTKEVTRTYHSNTESVRDVQFSPHQSYVFVAVSENGNVQLWDMR--RPDRWTQQFTAHSGPVFTCDWHPAEPWLATASRDKTIKVWDL----------------SVKPTLEYVVPTIASVGFIKWRPQRKFHIASCALVV----DCGVNVWDVRRPYIPYAAFTEHKDVATGVAWRGDPHVFLSTS 276
[Close]
BLAST of mRNA_S-firma_M_contig9128.20077.1 vs. uniprot
Match: E9GN97_DAPPU (GATOR complex protein WDR24 n=5 Tax=Daphnia TaxID=6668 RepID=E9GN97_DAPPU)

HSP 1 Score: 97.4 bits (241), Expect = 2.230e-19
Identity = 65/188 (34.57%), Postives = 89/188 (47.34%), Query Frame = 1 
Query:    1 SQDGGLKIWDVRGSKEAAHYNSHYGAVRDIQFSPLQEFHFAAVFNNGKMQIWDYKFLQPKMK-IASHNKSAFSVEWHHTVPGRLATTS-DKSVKIWDLQRQPERQ-TATTMAMEQTLQPTIELASPGVVSRAKWRPGHHDQIATAQAPLMGEKDFAMMVHDVNEPEIAHFALYGGDDKKNGFCWLDTP 555
            SQDG +K +D+R       + S+  +VRD+QF+P Q F FAAV  NG +Q+WD +      K   +H+   F+ +WH      LAT   DK+VK+WDL  +P  + T TTMA                V R KWRP     IA+    +    D  + V DV  P I H +     D   G  W  +P
Sbjct:  117 SQDGTMKYFDIRMKAAVMTFVSNAESVRDVQFNPYQCFSFAAVSENGTVQLWDLRRQDRSEKQFTAHSGPVFACDWHPENKSWLATAGRDKAVKVWDLGYRPVLEYTVTTMAS---------------VGRIKWRPQRMHHIASCALVI----DSVIHVWDVRRPYIPHASFNDHKDITTGIAWRGSP 285
[Close]
BLAST of mRNA_S-firma_M_contig9128.20077.1 vs. uniprot
Match: UPI0018D1F011 (GATOR complex protein WDR24 n=1 Tax=Plutella xylostella TaxID=51655 RepID=UPI0018D1F011)

HSP 1 Score: 97.4 bits (241), Expect = 2.300e-19
Identity = 63/194 (32.47%), Postives = 96/194 (49.48%), Query Frame = 1 
Query:    1 SQDGGLKIWDVRGSKEAAHYNSHYGAVRDIQFSPLQEFHFAAVFNNGKMQIWDYKFLQ-PKMKIASHNKSAFSVEWHHTVPGRLATTSDKSVKIWDLQRQPERQTATTMAMEQTLQPTI-ELASPGVVSRAKWRPGHHDQIATAQAPLMGEKDFAMMVHDVNEPEIAHFALYGGDDKKNGFCWLDTPLGFSESS 576
            SQDG +K +D+R  + A  + S+  +VRD+QFSP Q   FAAV  NG +Q+WD +  +  + +  +H+   F+ +WH  +P     + DK++K+WD+  +P            TL+ TI  +AS G V   KWRP    QI++    L    D A+ V DV  P +         D      W  +P  F  +S
Sbjct:  126 SQDGTMKCFDLRMKEVARTFMSNTESVRDVQFSPHQAHQFAAVSENGSVQLWDVRRPERAQAQFTAHSGPVFACDWHPELPWLATASRDKTIKVWDISAKP------------TLEHTIYTIASVGHV---KWRPQRKYQISSCALVL----DCAVHVWDVRRPHVPLATFAEHRDVTTAIAWRASPHAFLSTS 300
[Close]
BLAST of mRNA_S-firma_M_contig9128.20077.1 vs. uniprot
Match: A0A7E5WFI7_TRINI (GATOR complex protein WDR24 n=1 Tax=Trichoplusia ni TaxID=7111 RepID=A0A7E5WFI7_TRINI)

HSP 1 Score: 97.1 bits (240), Expect = 3.150e-19
Identity = 62/193 (32.12%), Postives = 95/193 (49.22%), Query Frame = 1 
Query:    1 SQDGGLKIWDVRGSKEAAHYNSHYGAVRDIQFSPLQEFHFAAVFNNGKMQIWDYKFLQP-KMKIASHNKSAFSVEWHHTVPGRLATTSDKSVKIWDLQRQPERQTATTMAMEQTLQPTIELASPGVVSRAKWRPGHHDQIATAQAPLMGEKDFAMMVHDVNEPEIAHFALYGGDDKKNGFCWLDTPLGFSESS 576
            SQDG +K +D+R  + A  + S+  ++RD+QFSP Q   FAAV  NG +Q+WD +  +   M+  +H+   F+ +WH  +P     + DK++K+WD+  +P         +E T+     +AS G V   KWRP    Q+A+    L    D A+ V DV  P +         D      WL  P  F  +S
Sbjct:  126 SQDGMMKCFDLRMKEVARTFISNTESIRDVQFSPHQNNTFAAVSENGNVQLWDVRRHERCLMQFTAHSGPVFACDWHPEMPWLATASRDKTIKVWDIYGKPN--------LEHTI---YTIASVGHV---KWRPQKKHQVASCALVL----DCAVHVWDVRRPHVPLATFAEHRDVTTAIAWLAEPHSFLSTS 300
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9128.20077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB29_ECTSI4.340e-9059.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KXV7_9PHAE1.120e-2574.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J5A0K1_9CHEL3.240e-2132.62GATOR complex protein WDR24 n=1 Tax=Nymphon striat... [more]
UPI00200DCB5F9.180e-2032.99GATOR complex protein WDR24 n=1 Tax=Leguminivora g... [more]
UPI0003F068019.290e-2034.52WD repeat-containing protein 24 n=1 Tax=Saccogloss... [more]
S4P4K8_9NEOP1.390e-1931.61GATOR complex protein WDR24 (Fragment) n=2 Tax=Par... [more]
A0A7R9H6C9_TIMCR1.980e-1930.46GATOR complex protein WDR24 (Fragment) n=1 Tax=Tim... [more]
E9GN97_DAPPU2.230e-1934.57GATOR complex protein WDR24 n=5 Tax=Daphnia TaxID=... [more]
UPI0018D1F0112.300e-1932.47GATOR complex protein WDR24 n=1 Tax=Plutella xylos... [more]
A0A7E5WFI7_TRINI3.150e-1932.12GATOR complex protein WDR24 n=1 Tax=Trichoplusia n... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9128contigS-firma_M_contig9128:165..3616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score295.8
Seed ortholog evalue1.9e-77
Seed eggNOG ortholog2880.D8LB29
KEGG koko:K20408
KEGG Pathwayko04150,map04150
EggNOG free text desc.positive regulation of TOR signaling
EggNOG OGsKOG0269@1,KOG0269@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-27_005450.1
Exons5
Model size759
Cds size759
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9128.20077.1prot_S-firma_M_contig9128.20077.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9128 165..3616 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828739.5198147-CDS-S-firma_M_contig9128:164..2801622828739.5198147-CDS-S-firma_M_contig9128:164..280Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9128 165..280 +
1697105133.3598726-CDS-S-firma_M_contig9128:164..2801697105133.3598726-CDS-S-firma_M_contig9128:164..280Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9128 165..280 +
1622828739.5420568-CDS-S-firma_M_contig9128:851..9421622828739.5420568-CDS-S-firma_M_contig9128:851..942Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9128 852..942 +
1697105133.3712008-CDS-S-firma_M_contig9128:851..9421697105133.3712008-CDS-S-firma_M_contig9128:851..942Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9128 852..942 +
1622828739.5572581-CDS-S-firma_M_contig9128:1535..17031622828739.5572581-CDS-S-firma_M_contig9128:1535..1703Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9128 1536..1703 +
1697105133.3792903-CDS-S-firma_M_contig9128:1535..17031697105133.3792903-CDS-S-firma_M_contig9128:1535..1703Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9128 1536..1703 +
1622828739.5709891-CDS-S-firma_M_contig9128:2500..27761622828739.5709891-CDS-S-firma_M_contig9128:2500..2776Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9128 2501..2776 +
1697105133.387963-CDS-S-firma_M_contig9128:2500..27761697105133.387963-CDS-S-firma_M_contig9128:2500..2776Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9128 2501..2776 +
1622828739.5847204-CDS-S-firma_M_contig9128:3508..36161622828739.5847204-CDS-S-firma_M_contig9128:3508..3616Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9128 3509..3616 +
1697105133.3977034-CDS-S-firma_M_contig9128:3508..36161697105133.3977034-CDS-S-firma_M_contig9128:3508..3616Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9128 3509..3616 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9128.20077.1

>prot_S-firma_M_contig9128.20077.1 ID=prot_S-firma_M_contig9128.20077.1|Name=mRNA_S-firma_M_contig9128.20077.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=253bp
SQDGGLKIWDVRGSKEAAHYNSHYGAVRDIQFSPLQEFHFAAVFNNGKMQ
IWDYKFLQPKMKIASHNKSAFSVEWHHTVPGRLATTSDKSVKIWDLQRQP
ERQTATTMAMEQTLQPTIELASPGVVSRAKWRPGHHDQIATAQAPLMGEK
DFAMMVHDVNEPEIAHFALYGGDDKKNGFCWLDTPLGFSESSGGAPPPPS
SGLAAAAASSSLSSSSTKSRRVGGGGSREEDARAEWRGMGVWQHLVSCSD
VS*
back to top

mRNA from alignment at S-firma_M_contig9128:165..3616+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9128.20077.1 ID=mRNA_S-firma_M_contig9128.20077.1|Name=mRNA_S-firma_M_contig9128.20077.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=3452bp|location=Sequence derived from alignment at S-firma_M_contig9128:165..3616+ (Sphaerotrichia firma Sfir_13m male)
TCTCAGGACGGGGGATTGAAGATCTGGGACGTGCGGGGCAGCAAAGAGGC
TGCCCACTACAATTCTCACTACGGGGCGGTTCGCGACATTCAGTTCAGCC
CGCTGCAAGAGTTCCAGTGAGTGCTCCCGTCGCAGCCTAAGGCATTGTTT
CTCCCCAGCTGGTGGGGTTCAGGAGGCAGCTTTCTGTCGATGAGTTTTTA
ATACATTTTCTGCATTCGTCAGCCGTATACGTCCGTCCTGTGAATAAATC
GTTCCAGGGGGACTGTTGTTTACACACTAACCCTCCCCGTCCCAGCCAAC
AGCACAGCACAAAATCCGCAATCCGTTAGGTTTGTTGGTTGTTTAGTTTC
GTAGTTTGCAAGGGGGTATGTTTTTCTCTCAAGTACCATTCGCTCAGCTT
TCGCGAGAATAGAGGGTTGTTCTGTTGTGCAAGTTGCGTGCGCCGCCTGA
GGTGCGTGCGGTAGTTTTGTCGAGCAAAGCTTTGAAGATCTCTCCCTTCA
TGTTGTTGTTGTTGTCGTTGTCTGAGCCGCCGCAGCAGCTACATTTCGCG
CTCGATTCGTGTTTCTCGCCCTTGTGGTATTTTGCTCTCTTTTCCTTGCC
GTGCCGGCGAGAGTTCTTTCATGCTTTCAACCCCCGTTTCCGCGCGGCTG
CTGTTGCTACTGGTGGCCGTGGTGTTTGCACAAACAGCTTCGCCGCAGTG
TTCAACAACGGCAAAATGCAGATCTGGGACTACAAGTTCTTGCAGCCGAA
GATGAAGATCGCGTCCCACAACAAGTCGGTAAGTCTAGCCTCGGGGGGGT
TTGTGTTCCTGAATGCACTGTCACTACTGTTCGTCACGGAAAACGCCCGC
GTTTGCCGCCTTCGACCTGTCTAGTGTCCAACACAACTAAAAAAGACGTT
CGCTCGATCGGCCATAGATCGGATCATACGTACGAAGCAGCCGAAGAGCA
TGAAAGAAGCGAGCAGATGACGCATATGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTTTCTTCCCATCTATTCTGGTAGAAGTGCCTTCGGTCCAA
GGCGAGACGCGTGCTTCGCTTTGCAGGGTGTTCAGAGGGACTACACCTTT
GCAGCACATGTAGGCCGCGTTCCTCTTTCCAAGCTAAATTACCAACCGCC
CACGTGCATCAGCGCAGCAGCACGACCGACGGTTTATATTGTCTCCCCGA
CACCAAAAAATAATTAAATAAAGAAACACACGTATTGTCTCCCCAAAGCC
AACAAATAAATTAATAAAAAAACACACACATGTGTTTCTAATACATACTG
GTATGTATGTGTGTTTTTTTACACGCTTTCAACGCAAATCGTGGCGGGTG
CGGTGGTGGGCGGCACGCAAGGCTTTCTCCGTGGAGTGGCACCACACCGT
GCCGGGTCGCCTCGCCACCACCTCCGACAAGTCGGTCAAGATCTGGGACC
TTCAGCGACAGCCCGAGAGACAGACGGCGACAACGATGGCCATGGAGCAG
ACCCTCCAGCCCACCATCGAGCTGGCGTCGCCGGGGGTGGTGAGTTTTGT
TGGCGGCGACGGGTTGCCCCGAAGGGGGAGGAGTGTTTTTGGTGTTTTCG
GAAAGGTGTTTCCTGTGACATGCATGCTGTGGGCGCGCTTTTTTTTGACA
GCCGGCCTAATTTAGCGCGCGAGCCAGCCGCTCTCCGTGGACTCTTGGTG
TTCTTTGCGTCAATTCTCCGCCATCTCCGTAGATGCCGCGTGTTCGCCGT
GGGTGCTATCATAGTCTTTTTTTTTGCCCTCCGTAGATCGTAGCTTCGCG
GGGCGAGAACAGGCGCGTGTGACTCACCATGCCATCCTCTTGGGCAGTGG
CAGTGACACCCCTCCCCCCCCGTGTTCAATATCTGGCTCCCCTTTGAGAC
TCGATCCACCGATCCATGTCGGATGTTTTCGATTGGCTGGTGTCCTTCCC
CGTTAGTTACGGTGTTGTTTTTCCCTGTTATTTCGGAGAAGCCGTGCGTG
CACCCACCCTCATGAAAAAAAATGTTTTGTTTTGTTTGTCCGTTGCTTTT
GTGGGGCAACAACAACACCAACAAAAAAAAAAGGCACCCACCCTCATGAA
AAAATGAAACACGTTTTTTTTTTTTTTTGTGTCCGTTGTTTTTTTGGGGG
CAGCAACAACACCACAAAAAAAAAAAAAAAAAAAAAAACTAATGGATTGC
GGATCTTGTGCTGCTGGCTGGGACGGGAAAGGGTTAGTGTGTAAACAACA
GCCCCCCAGAAACGACTTATTCACAGGACGGACGGACGTACAGGGCTGAC
GGATGTAGAAAATTTCTTAAAAAAAAAAAAAAACAGGTGAGTCGCGCCAA
GTGGAGGCCCGGCCACCACGACCAGATAGCCACGGCCCAGGCGCCGCTCA
TGGGGGAGAAGGACTTCGCGATGATGGTGCACGACGTCAACGAGCCCGAG
ATCGCGCACTTCGCCCTGTACGGCGGGGACGACAAGAAGAACGGCTTCTG
CTGGCTGGACACGCCGCTCGGCTTTTCGGAGAGCTCGGGTGGTGCCCCTC
CTCCGCCTTCTTCGGGTCTTGCCGCCGCCGCCGCGTCGTCGTCGTTATCT
TCGTCGTCCACGGTGAGGTTTGTTTTTGTTTTCGAGGCCGTTTTGTCTAC
GCTATTTATCTACTACTTTTTGACGTGAGCGGTGATCTGTGCACCCGTCC
GACCCGTGAAAGAGTCGCGTTCCAAAGCGGGGGTCGCTGACGTTTAACCC
TCCCTCACCATCCCAGGCTATGGTAGAAGGTGCCGTACATACACGGCTCT
TTTTTTTTTTTGGCATCTTGTCTCCGTTGTTCGTTGAGAGTGCTTTCGTG
CCCGCAGCCCGCTTTGCTCTCCCTCGTCTTTTTTTTGTTTTTTTCGTCGT
GCGTACTAATTTACTGCTGTGTGATCGTTTTTTCTTCATGGTATCGGCGC
ACCGTAATAAATCCAGTCCGATACGCATGGCTATGTAACTCCCAACAAGA
GAAACCCTTTCCCTTGCCTCACCACCCTAACCCTCACCTTAACCCTAACC
TTAAGTTAGCTTGCGACCACGGACATTGACTGTGTCTAGGGATCAGTACG
GACACAAGGGGGTACTGGGTGGTGAGATTCGGGATGGTTTTTAATGTGAA
GACATCAACAACAACCACAACCGCAACAATAACAACAATAACAACAGCAG
TATCAACAGCAGCAGCAACAACAACAACAACAACAACTCACACCAAGCAT
TGAGACGGACATCGAGTCATCCACCCCCCCCCATACGACTTTGCTCCTCC
CCCCCCCACCCTTTTTTTTATTCTTCTTTTCTTTTCTTTTTCAGAAATCG
CGTCGGGTAGGCGGCGGCGGCAGCCGCGAAGAAGACGCCAGGGCGGAGTG
GCGTGGGATGGGGGTGTGGCAGCATCTCGTGTCGTGCTCGGACGTGAGTT
AA
back to top

Coding sequence (CDS) from alignment at S-firma_M_contig9128:165..3616+

>mRNA_S-firma_M_contig9128.20077.1 ID=mRNA_S-firma_M_contig9128.20077.1|Name=mRNA_S-firma_M_contig9128.20077.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1518bp|location=Sequence derived from alignment at S-firma_M_contig9128:165..3616+ (Sphaerotrichia firma Sfir_13m male)
TCTCAGGACGGGGGATTGAAGATCTGGGACGTGCGGGGCAGCAAAGAGGC
TGCCCACTACAATTCTCACTACGGGGCGGTTCGCGACATTCAGTTCAGCC
CGCTGCAAGAGTTCCATCTCAGGACGGGGGATTGAAGATCTGGGACGTGC
GGGGCAGCAAAGAGGCTGCCCACTACAATTCTCACTACGGGGCGGTTCGC
GACATTCAGTTCAGCCCGCTGCAAGAGTTCCACTTCGCCGCAGTGTTCAA
CAACGGCAAAATGCAGATCTGGGACTACAAGTTCTTGCAGCCGAAGATGA
AGATCGCGTCCCACAACAAGTCGCTTCGCCGCAGTGTTCAACAACGGCAA
AATGCAGATCTGGGACTACAAGTTCTTGCAGCCGAAGATGAAGATCGCGT
CCCACAACAAGTCGGCTTTCTCCGTGGAGTGGCACCACACCGTGCCGGGT
CGCCTCGCCACCACCTCCGACAAGTCGGTCAAGATCTGGGACCTTCAGCG
ACAGCCCGAGAGACAGACGGCGACAACGATGGCCATGGAGCAGACCCTCC
AGCCCACCATCGAGCTGGCGTCGCCGGGGGTGGCTTTCTCCGTGGAGTGG
CACCACACCGTGCCGGGTCGCCTCGCCACCACCTCCGACAAGTCGGTCAA
GATCTGGGACCTTCAGCGACAGCCCGAGAGACAGACGGCGACAACGATGG
CCATGGAGCAGACCCTCCAGCCCACCATCGAGCTGGCGTCGCCGGGGGTG
GTGAGTCGCGCCAAGTGGAGGCCCGGCCACCACGACCAGATAGCCACGGC
CCAGGCGCCGCTCATGGGGGAGAAGGACTTCGCGATGATGGTGCACGACG
TCAACGAGCCCGAGATCGCGCACTTCGCCCTGTACGGCGGGGACGACAAG
AAGAACGGCTTCTGCTGGCTGGACACGCCGCTCGGCTTTTCGGAGAGCTC
GGGTGGTGCCCCTCCTCCGCCTTCTTCGGGTCTTGCCGCCGCCGCCGCGT
CGTCGTCGTTATCTTCGTCGTCCACGGTGAGTCGCGCCAAGTGGAGGCCC
GGCCACCACGACCAGATAGCCACGGCCCAGGCGCCGCTCATGGGGGAGAA
GGACTTCGCGATGATGGTGCACGACGTCAACGAGCCCGAGATCGCGCACT
TCGCCCTGTACGGCGGGGACGACAAGAAGAACGGCTTCTGCTGGCTGGAC
ACGCCGCTCGGCTTTTCGGAGAGCTCGGGTGGTGCCCCTCCTCCGCCTTC
TTCGGGTCTTGCCGCCGCCGCCGCGTCGTCGTCGTTATCTTCGTCGTCCA
CGAAATCGCGTCGGGTAGGCGGCGGCGGCAGCCGCGAAGAAGACGCCAGG
GCGGAGTGGCGTGGGATGGGGGTGTGGCAGCATCTCGTGTCGTGCTCGGA
CGTGAGTTAAAAATCGCGTCGGGTAGGCGGCGGCGGCAGCCGCGAAGAAG
ACGCCAGGGCGGAGTGGCGTGGGATGGGGGTGTGGCAGCATCTCGTGTCG
TGCTCGGACGTGAGTTAA
back to top