mRNA_S-firma_M_contig9122.20074.1 (mRNA) Sphaerotrichia firma Sfir_13m male
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Overview
Homology
BLAST of mRNA_S-firma_M_contig9122.20074.1 vs. uniprot
Match: D7G7F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F9_ECTSI) HSP 1 Score: 163 bits (413), Expect = 1.590e-46 Identity = 87/151 (57.62%), Postives = 101/151 (66.89%), Query Frame = 1
Query: 1 MLSSGGNRCLDAFNVALSQACDGGDKRWYASTLELQLASREFCTACRSVPMLHVRVDENTPRSLWSPRKSQTRPNTRSSKVRILSRVPAVRAFRLTWGLPLEVLHEGAAVELWTWLELLTLRWGPSSLGGLGSVAWPQKRLKHLVLDIDFN 453
M + G R DAF +ALSQAC+GG+KRWY ST ELQL S + C ACRS P LHVRV TP SLWSP Q PNT+SSKVR++SRVP VRA RLTW +E L + AA+ELW+ E L + GP LGSV WP L LVLD DF+
Sbjct: 1 MPTEGYTRSFDAFAIALSQACEGGEKRWYTSTTELQLGSLDICRACRSTPTLHVRVTGGTPTSLWSPPTVQALPNTQSSKVRVVSRVPVVRALRLTWAFSMETLVQRAAIELWSRSERLEMV-GPLCAASLGSVVWPLG-LTQLVLDTDFH 149
BLAST of mRNA_S-firma_M_contig9122.20074.1 vs. uniprot
Match: A0A6H5LIJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIJ3_9PHAE) HSP 1 Score: 172 bits (436), Expect = 1.850e-45 Identity = 93/153 (60.78%), Postives = 107/153 (69.93%), Query Frame = 1
Query: 22 RCLDAFNVALSQACDGGDKRWYASTLELQLASREFCTACRSVPMLHVRVDENTPRSLWSPRKSQTRPNTRSSKVRILSRVPAVRAFRLTWGLPLEVLHEGAAVELWTWLELLTLRWGPSSLGGLGS-VAWPQKRLKHLVLDIDFNQTIAGVVW 477
RCLDAF +ALSQAC+GG+KRWYASTLELQL S + C ACR+ +LHV VD+ TPRSLWS R +QTRPNTRS + I SRVP VRA RLTW L +E L AA+ELWTW E L L G S + LGS V WP + L LVL D + G VW
Sbjct: 10 RCLDAFVIALSQACEGGEKRWYASTLELQLTSLDLCRACRTTSILHVHVDDQTPRSLWSSRTAQTRPNTRSWNLHISSRVPVVRALRLTWALSMEALLRKAAIELWTWSERLELL-GSSCVSSLGSEVVWP-RGLTQLVLYTD-SDIAMGTVW 159
BLAST of mRNA_S-firma_M_contig9122.20074.1 vs. uniprot
Match: A0A6H5KLV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE) HSP 1 Score: 150 bits (380), Expect = 5.460e-39 Identity = 86/159 (54.09%), Postives = 102/159 (64.15%), Query Frame = 1
Query: 13 GGNRCLDAFNVALSQACDGGDKRWYASTLELQLASREFCTACRSVPMLHVRVDENTPRSLWSPRKSQTRPNTRSSKVRILSRVPAVRAFRLTWGLPLEVLHEGAAVELWTWLELLTLRWGPSSLGGLGSVAWPQKRLKHLVLDIDFNQTIAGVVWPDSL 489
G + CL AF VAL+Q C+G +KRWYASTLELQL S EFC ACR VP LHVRVD TPRSLWSP KS RS + + +RVPAV+A LTW L +EVL + +AVEL + + + G SS LGS+ W Q LK LV D D + A WP SL
Sbjct: 13 GRSECLRAFIVALNQTCNGQEKRWYASTLELQLVSLEFCGACRRVPTLHVRVDRQTPRSLWSPCKSHATTKKRSREACVSNRVPAVQASGLTWALDMEVLLQTSAVELRSRSKYRRVS-GNSSTASLGSMFWLQMMLKRLVFDSDMPASTAS--WPASL 168
BLAST of mRNA_S-firma_M_contig9122.20074.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE) HSP 1 Score: 146 bits (368), Expect = 1.220e-35 Identity = 84/163 (51.53%), Postives = 100/163 (61.35%), Query Frame = 1
Query: 1 MLSSGGNRCLDAFNVALSQACDGGDKRWYASTLELQLASREFCTACRSVPMLHVRVDENTPRSLWSPRKSQTRPNTRSSKVRILSRVPAVRAFRLTWGLPLEVLHEGAAVELWTWLELLTLRWGPSSLGGLGSVAWPQKRLKHLVLDIDFNQTIAGVVWPDSL 489
M + G ++CLDAF VAL+QACDG +KRWY STLELQL S E C ACR V LHVRV TP SLW P ++ T N RS KV I SRVP V+AF LTW LP+ VL + +A E+ + SS L S WPQ RLK +V + D T+ WP SL
Sbjct: 1 MTTKGNSKCLDAFVVALNQACDGQEKRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHTTTNNRSPKVCISSRVPVVQAFGLTWALPMGVLQQRSATEVRSGSGCRRAN-THSSAASLESAVWPQ-RLKRMVFESDM--TVNTASWPASL 159
BLAST of mRNA_S-firma_M_contig9122.20074.1 vs. uniprot
Match: A0A6H5KXX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXX4_9PHAE) HSP 1 Score: 144 bits (362), Expect = 1.820e-35 Identity = 90/183 (49.18%), Postives = 102/183 (55.74%), Query Frame = 1
Query: 1 MLSSGGNRCLDAFNVALSQACDGGDKRWYASTLELQLASREFCTACRSVPMLHVRVDENTPRSLWSPRKSQTRPNTRSSKVR----------------------------ILSRVPAVRAFRLTWGLPLEVLHEGAAVELWTWLELLTLRWGPSSLGGLGSVAWPQKRLKHLVLDIDFNQTIA 465
M S G +R DA +A+SQA +G KRWY STLEL+LAS E C ACR VP +HVRVD NTP SLWSP TR +TRSSK R I SRVP +A LTW LP E+L +G AVELWT LE L LR S L SVAWPQ LK L L+ F I+
Sbjct: 1 MDSEGASRGFDALIIAISQAYEGRGKRWYTSTLELRLASLETCRACRRVPTIHVRVDANTPPSLWSPHAMPTRAHTRSSKTRAXXXXXXXXXXXXXXXXXXXXXXXXKARISSRVPVGQALGLTWALPTEILLQGVAVELWTKLEFLQLRESLSP-SDLVSVAWPQN-LKRLALETGFEAAIS 181
BLAST of mRNA_S-firma_M_contig9122.20074.1 vs. uniprot
Match: A0A6H5L1V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V9_9PHAE) HSP 1 Score: 134 bits (336), Expect = 2.640e-32 Identity = 84/164 (51.22%), Postives = 98/164 (59.76%), Query Frame = 1
Query: 1 MLSSGGNRCLDAFNVALSQACDGGDKRWYASTLELQLASREFCTACRSVPMLHVRVDENTPRSLWSPRKSQTRPNTRSSKVRILSRVPAVRAFRLTWGLPLEVLHEGAAVELWTWLELLTLRWGPSSLGGLGSVAWPQKRLKHLVLDID-FNQTIAGVVWPDSL 489
M S RCLDAF VALSQ +GG+KRWY STL+LQLAS EFC ACRS PMLHV VD TP +LWS Q P +S +RVPAV+A LTW P E A+ ELWT LE L L+ + L SV WPQ L+ LV+D F + + WP SL
Sbjct: 1 MTSEAQRRCLDAFVVALSQCYEGGEKRWYTSTLQLQLASLEFCGACRSTPMLHVYVDAETPPTLWS--LGQANPTAGTS-----TRVPAVQAVGLTWARPTESPLGSASSELWTRLESLQLQVSLCT-ANLDSVVWPQG-LQRLVMDCTVFIIPLEMMSWPSSL 155
BLAST of mRNA_S-firma_M_contig9122.20074.1 vs. uniprot
Match: D7FTK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK8_ECTSI) HSP 1 Score: 125 bits (313), Expect = 1.120e-30 Identity = 77/158 (48.73%), Postives = 97/158 (61.39%), Query Frame = 1
Query: 7 SSGGNRCLDAFNVALSQACDGGDKRWYASTLELQLASREFCTACRSVPMLHVRVDENTPRSLWSPRKSQTRPNTRSSKVRILSRVPAVRAFRLTWGLPLEVLHEGAAVELWTWLELLTLRWGPSSLGGLGSVAWPQKRLKHLVLDIDFNQTIAG-VVW 477
+ GG LD VAL+QACDG +KRWY STLELQL S E C ACRS +LHV V E+TP +LWS R S+T P+ RS +V +RVPAV+A TW LP++ L + AA E E L+ G S + SV WP+ LK LV F++ + G VW
Sbjct: 83 TEGGGSSLDTLIVALNQACDGQEKRWYVSTLELQLVSLELCGACRSAQLLHVFVREDTPPTLWSSRTSRTTPSQRSPEVCTSNRVPAVQALCWTWALPMDRLPQRAAAEPQPVTER-RLQDGHSFAASVESVVWPES-LKRLV----FSRRMPGKAVW 234
BLAST of mRNA_S-firma_M_contig9122.20074.1 vs. uniprot
Match: A0A6H5K8K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K9_9PHAE) HSP 1 Score: 119 bits (298), Expect = 1.830e-26 Identity = 74/159 (46.54%), Postives = 88/159 (55.35%), Query Frame = 1
Query: 13 GGNRCLDAFNVALSQACDGGDKRWYASTLELQLASREFCTACRSVPMLHVRVDENTPRSLWSPRKSQTRPNTRSSKVRILSRVPAVRAFRLTWGLPLEVLHEGAAVELWTWLELLTLRWGPSSLGGLGSVAWPQKRLKHLVLDIDFNQTIAGVVWPDSL 489
G + CLDAF VAL QA DG KRWY STLELQL S EFC ACRS V++ TP SLWSPRKS RS + I SRVPAV+A W LP+E+L +A EL E GPSS G + W QK + + +++ V WP L
Sbjct: 25 GRSECLDAFIVALKQAGDGRAKRWYVSTLELQLVSLEFCGACRSALSFDVQIHRQTPHSLWSPRKSHGTLKKRSREACIPSRVPAVQANGWMWALPMEILLPRSATELHQVSENRQPT-GPSSATSPGRMGWFQKLTRLMFYS---ERSVNSVSWPACL 179
BLAST of mRNA_S-firma_M_contig9122.20074.1 vs. uniprot
Match: D7G0Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z9_ECTSI) HSP 1 Score: 108 bits (271), Expect = 7.860e-26 Identity = 52/75 (69.33%), Postives = 58/75 (77.33%), Query Frame = 1
Query: 19 NRCLDAFNVALSQACDGGDKRWYASTLELQLASREFCTACRSVPMLHVRVDENTPRSLWSPRKSQTRPNTRSSKV 243
++CLDAF VAL+Q CDG +KRWYASTLELQL S EFC ACR VP LHVRVD TPRSLWSPR + + RS KV
Sbjct: 39 SKCLDAFVVALNQTCDGQEKRWYASTLELQLVSLEFCGACRHVPTLHVRVDRRTPRSLWSPRTTPITAHKRSRKV 113
BLAST of mRNA_S-firma_M_contig9122.20074.1 vs. uniprot
Match: A0A6H5JL88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL88_9PHAE) HSP 1 Score: 111 bits (278), Expect = 2.340e-24 Identity = 67/144 (46.53%), Postives = 85/144 (59.03%), Query Frame = 1
Query: 73 DKRWYASTLELQLASREFCTACRSVPMLHVRVDENTPRSLWSPRKSQTRPNTRSSKVRI-----LSRVPAVRAFRLTWGLPLEVLHEGAAVELWTWLELLTLRWGPSSLGGLGSVAWPQKRLKHLVLDIDFNQTIAGVVWPDSL 489
+ RW+ STL +QLAS EFC A RS+P + + VD PRSLW RKSQT +TR ++R LSRVP +RA RL WGL +E L + AVELWT L+ L L G S S+ PQ RL+ L + D ++ V WP L
Sbjct: 2 NNRWFTSTLNIQLASLEFCRASRSIPTIALHVDSRIPRSLWDGRKSQTPSSTRGLEIRCWKARPLSRVPLIRASRLNWGLSMETLLQSTAVELWTGLKSLHLC-GDVSDASPASMVQPQ-RLEQLEGNKDARDSVEAVPWPAFL 143 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9122.20074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_M_contig9122.20074.1 >prot_S-firma_M_contig9122.20074.1 ID=prot_S-firma_M_contig9122.20074.1|Name=mRNA_S-firma_M_contig9122.20074.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=314bp MLSSGGNRCLDAFNVALSQACDGGDKRWYASTLELQLASREFCTACRSVPback to top mRNA from alignment at S-firma_M_contig9122:8..949- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_M_contig9122.20074.1 ID=mRNA_S-firma_M_contig9122.20074.1|Name=mRNA_S-firma_M_contig9122.20074.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=942bp|location=Sequence derived from alignment at S-firma_M_contig9122:8..949- (Sphaerotrichia firma Sfir_13m male)back to top Coding sequence (CDS) from alignment at S-firma_M_contig9122:8..949- >mRNA_S-firma_M_contig9122.20074.1 ID=mRNA_S-firma_M_contig9122.20074.1|Name=mRNA_S-firma_M_contig9122.20074.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1884bp|location=Sequence derived from alignment at S-firma_M_contig9122:8..949- (Sphaerotrichia firma Sfir_13m male)back to top |