mRNA_S-firma_M_contig912.20070.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig912.20070.1
Unique NamemRNA_S-firma_M_contig912.20070.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig912.20070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig912contigS-firma_M_contig912:26261..26645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size387
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828738.410592-CDS-S-firma_M_contig912:26260..266441622828738.410592-CDS-S-firma_M_contig912:26260..26644Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig912 26261..26644 +
1697105132.722064-CDS-S-firma_M_contig912:26260..266441697105132.722064-CDS-S-firma_M_contig912:26260..26644Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig912 26261..26644 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig912.20070.1prot_S-firma_M_contig912.20070.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig912 26261..26644 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig912.20070.1

>prot_S-firma_M_contig912.20070.1 ID=prot_S-firma_M_contig912.20070.1|Name=mRNA_S-firma_M_contig912.20070.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=128bp
PTNFGQKQGSLPGLSFVSGKKEASPPPFLISPPCCFSLRVPAGMLRLPIT
STSTCFFASQTLRPNQLFGRTRYVCLHFYLRVAPRLVCVSRRMVMLLSSG
GVLSHLGSRACIDCQNIFSTPGGMSPPS
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mRNA from alignment at S-firma_M_contig912:26261..26645+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig912.20070.1 ID=mRNA_S-firma_M_contig912.20070.1|Name=mRNA_S-firma_M_contig912.20070.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=385bp|location=Sequence derived from alignment at S-firma_M_contig912:26261..26645+ (Sphaerotrichia firma Sfir_13m male)
CCAACAAACTTCGGCCAAAAACAAGGCTCCCTCCCGGGGTTATCGTTCGT
TTCAGGAAAAAAAGAAGCTTCCCCTCCGCCTTTCTTGATTTCGCCCCCGT
GTTGTTTTTCCCTACGAGTTCCCGCCGGGATGTTGCGTCTTCCCATCACT
AGTACCAGTACGTGTTTTTTTGCATCACAAACCTTGCGTCCAAACCAACT
TTTCGGCCGAACACGGTATGTATGCCTACATTTCTATCTGCGGGTGGCAC
CACGCCTGGTTTGTGTTTCGAGACGAATGGTGATGCTGTTGTCGTCGGGT
GGTGTCCTGTCGCATTTAGGGTCACGTGCGTGTATAGATTGTCAAAACAT
TTTTTCTACCCCCGGGGGGATGTCTCCCCCCTCGG
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Coding sequence (CDS) from alignment at S-firma_M_contig912:26261..26645+

>mRNA_S-firma_M_contig912.20070.1 ID=mRNA_S-firma_M_contig912.20070.1|Name=mRNA_S-firma_M_contig912.20070.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=768bp|location=Sequence derived from alignment at S-firma_M_contig912:26261..26645+ (Sphaerotrichia firma Sfir_13m male)
CCAACAAACTTCGGCCAAAAACAAGGCTCCCTCCCGGGGTTATCGTTCGT
TTCAGGAAAAAAAGAAGCTTCCCCTCCGCCTTTCTTGATTTCGCCCCCGT
GTTGTTTTTCCCTACGAGTTCCCGCCGGGATGTTGCGTCTTCCCATCACT
AGTACCAGTACGTGTTTTTTTGCATCACAAACCTTGCGTCCAAACCAACT
TTTCGGCCGAACACGGTATGTATGCCTACATTTCTATCTGCGGGTGGCAC
CACGCCTGGTTTGTGTTTCGAGACGAATGGTGATGCTGTTGTCGTCGGGT
GGTGTCCTGTCGCATTTAGGGTCACGTGCGTGTATAGATTGTCAAAACAT
TTTTTCTACCCCCGGGGGGATGTCTCCCCCCTCGCCAACAAACTTCGGCC
AAAAACAAGGCTCCCTCCCGGGGTTATCGTTCGTTTCAGGAAAAAAAGAA
GCTTCCCCTCCGCCTTTCTTGATTTCGCCCCCGTGTTGTTTTTCCCTACG
AGTTCCCGCCGGGATGTTGCGTCTTCCCATCACTAGTACCAGTACGTGTT
TTTTTGCATCACAAACCTTGCGTCCAAACCAACTTTTCGGCCGAACACGG
TATGTATGCCTACATTTCTATCTGCGGGTGGCACCACGCCTGGTTTGTGT
TTCGAGACGAATGGTGATGCTGTTGTCGTCGGGTGGTGTCCTGTCGCATT
TAGGGTCACGTGCGTGTATAGATTGTCAAAACATTTTTTCTACCCCCGGG
GGGATGTCTCCCCCCTCG
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