mRNA_S-firma_M_contig911.20056.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig911.20056.1
Unique NamemRNA_S-firma_M_contig911.20056.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig911.20056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig911contigS-firma_M_contig911:25338..25759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size422
Cds size414
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828737.177838-UTR-S-firma_M_contig911:25337..253451622828737.177838-UTR-S-firma_M_contig911:25337..25345Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig911 25338..25345 +
1697105131.8974285-UTR-S-firma_M_contig911:25337..253451697105131.8974285-UTR-S-firma_M_contig911:25337..25345Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig911 25338..25345 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828737.1910992-CDS-S-firma_M_contig911:25345..257591622828737.1910992-CDS-S-firma_M_contig911:25345..25759Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig911 25346..25759 +
1697105131.9080508-CDS-S-firma_M_contig911:25345..257591697105131.9080508-CDS-S-firma_M_contig911:25345..25759Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig911 25346..25759 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig911.20056.1prot_S-firma_M_contig911.20056.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig911 25346..25759 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig911.20056.1

>prot_S-firma_M_contig911.20056.1 ID=prot_S-firma_M_contig911.20056.1|Name=mRNA_S-firma_M_contig911.20056.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=138bp
MANGLSSSPLAIRAWRGWPIVALAIRGPRMEVNERLRSSAASMYCSTKTL
LCTRISTNRQLSHPKQENAPSLTPLWVSTSNTCVSAYRPFSLLQYAAHPF
PPLPNHLSRTLSMSPTRFPLHPSPPRNTPNRAPPQSYF
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mRNA from alignment at S-firma_M_contig911:25338..25759+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig911.20056.1 ID=mRNA_S-firma_M_contig911.20056.1|Name=mRNA_S-firma_M_contig911.20056.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=422bp|location=Sequence derived from alignment at S-firma_M_contig911:25338..25759+ (Sphaerotrichia firma Sfir_13m male)
GCCCGAACATGGCGAACGGCTTGTCGAGCAGTCCCTTGGCAATCAGGGCC
TGGCGAGGGTGGCCGATCGTCGCGTTAGCGATTCGTGGTCCAAGGATGGA
GGTGAATGAGCGCTTGAGATCTAGTGCAGCATCTATGTACTGCTCAACCA
AAACCCTGCTGTGTACTCGTATATCTACCAATCGCCAGCTTTCGCACCCA
AAACAAGAGAATGCACCATCTCTCACTCCTCTCTGGGTCTCTACCTCGAA
CACGTGTGTCTCTGCTTACCGGCCATTTTCTCTTCTTCAATATGCTGCCC
ACCCATTTCCCCCGCTCCCCAACCATCTGTCCCGAACCCTCTCGATGTCT
CCCACTCGCTTCCCTCTGCATCCCTCGCCTCCACGAAACACCCCCAATCG
AGCACCACCTCAAAGCTACTTC
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Coding sequence (CDS) from alignment at S-firma_M_contig911:25338..25759+

>mRNA_S-firma_M_contig911.20056.1 ID=mRNA_S-firma_M_contig911.20056.1|Name=mRNA_S-firma_M_contig911.20056.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=828bp|location=Sequence derived from alignment at S-firma_M_contig911:25338..25759+ (Sphaerotrichia firma Sfir_13m male)
ATGGCGAACGGCTTGTCGAGCAGTCCCTTGGCAATCAGGGCCTGGCGAGG
GTGGCCGATCGTCGCGTTAGCGATTCGTGGTCCAAGGATGGAGGTGAATG
AGCGCTTGAGATCTAGTGCAGCATCTATGTACTGCTCAACCAAAACCCTG
CTGTGTACTCGTATATCTACCAATCGCCAGCTTTCGCACCCAAAACAAGA
GAATGCACCATCTCTCACTCCTCTCTGGGTCTCTACCTCGAACACGTGTG
TCTCTGCTTACCGGCCATTTTCTCTTCTTCAATATGCTGCCCACCCATTT
CCCCCGCTCCCCAACCATCTGTCCCGAACCCTCTCGATGTCTCCCACTCG
CTTCCCTCTGCATCCCTCGCCTCCACGAAACACCCCCAATCGAGCACCAC
CTCAAAGCTACTTCATGGCGAACGGCTTGTCGAGCAGTCCCTTGGCAATC
AGGGCCTGGCGAGGGTGGCCGATCGTCGCGTTAGCGATTCGTGGTCCAAG
GATGGAGGTGAATGAGCGCTTGAGATCTAGTGCAGCATCTATGTACTGCT
CAACCAAAACCCTGCTGTGTACTCGTATATCTACCAATCGCCAGCTTTCG
CACCCAAAACAAGAGAATGCACCATCTCTCACTCCTCTCTGGGTCTCTAC
CTCGAACACGTGTGTCTCTGCTTACCGGCCATTTTCTCTTCTTCAATATG
CTGCCCACCCATTTCCCCCGCTCCCCAACCATCTGTCCCGAACCCTCTCG
ATGTCTCCCACTCGCTTCCCTCTGCATCCCTCGCCTCCACGAAACACCCC
CAATCGAGCACCACCTCAAAGCTACTTC
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