mRNA_S-firma_M_contig911.20055.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig911.20055.1
Unique NamemRNA_S-firma_M_contig911.20055.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
BLAST of mRNA_S-firma_M_contig911.20055.1 vs. uniprot
Match: A0A6H5JUF1_9PHAE (Thioesterase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUF1_9PHAE)

HSP 1 Score: 400 bits (1029), Expect = 2.520e-133
Identity = 193/259 (74.52%), Postives = 220/259 (84.94%), Query Frame = 1
Query:   79 MSSAALEKWVVCRRARPDASVRLFCAAWAGGSATSFNKWPARLPEAVELHALQLPGRMSRSKEECLTSLPEIVERAAEALIAKGLLDKPFAMFGHSFGSLVMFELVRKLAEIAGKTPLCLIVSGCRPPDMCVGPGFSPAVSQLPRDALVDHLVNLGGMPAELRDQTELVDYFLPPIRADYTAFESYRYGPRPEDDDCPPISCPLVCLGGEEDSAAPQSDLEHWASFTTGDFRLKMFDGGHFFLQGQGEPAVLEALSDVL 855
            MSS+ALEKWVVCRR + DAS+RLFCAAWAGGSA+SFNKW +++PEAVELHAL+ PGRM RSKE+ LTS+  IVE  A+AL+  GLLDKPFA+FGHSFGSLVMFEL RKL E AGK P+ L+VSGC PPDMCVG G SP +SQLPRDALVDHL+ LGGMP ELRDQTELVDYFLPPIRADYTA+E YRY PRP DD  P I+CP++CLGGEED  AP+SDLE W+S T G+FRL+MF GGHFFLQG+GE AVL  L +VL
Sbjct:    1 MSSSALEKWVVCRRVKADASIRLFCAAWAGGSASSFNKWTSKMPEAVELHALEFPGRMRRSKEDSLTSVSAIVEGVAQALVTMGLLDKPFALFGHSFGSLVMFELARKLKEDAGKIPVYLVVSGCCPPDMCVGGGRSPPISQLPRDALVDHLIGLGGMPEELRDQTELVDYFLPPIRADYTAYEGYRYEPRPGDDSRP-ITCPIICLGGEEDGGAPRSDLELWSSLTAGEFRLQMFGGGHFFLQGEGEQAVLTFLGNVL 258          
BLAST of mRNA_S-firma_M_contig911.20055.1 vs. uniprot
Match: A0A2V8RTA5_9BACT (Putative thioesterase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8RTA5_9BACT)

HSP 1 Score: 187 bits (474), Expect = 4.150e-51
Identity = 106/267 (39.70%), Postives = 147/267 (55.06%), Query Frame = 1
Query:   79 MSSAALEKWVVCRRARPDASVRLFCAAWAGGSATSFNKWPARLPEAVELHALQLPGRMSRSKEECLTSLPEIVERAAEALIAKGLLDKPFAMFGHSFGSLVMFELVRKLAEIAGKTPLCLIVSGCRPPDMCVGPGFSPAVSQLPRDALVDHLVNLGGMPAELRDQTELVDYFLPPIRADYTAFESYRYGPRPEDDDCPPISCPLVCLGGEEDSAAPQSDLEHWASFTTGDFRLKMFDGGHFFLQGQGEPAVLEALSDVLAPLY*TET 879
            M  ++   W+V  R  P A +RLFC  +AGG A +++ WP  LP  VE+ A+QLPGR SRS+E     L ++VE  A A++    LD+P+A FGHS G+L+ FEL R+L   A  +P  L VSG R P +   P  +P +  LP    V  L  L G P E+    EL++  LP +RAD+ A  +Y Y P P       ++CP+   GG +D    ++ LE W + TTG F L+M  G HF+LQ  G   +L +L   L  L  T T
Sbjct:    1 MRGSSATPWLVINRPNPQARLRLFCFPYAGGGAATYHAWPGELPTEVEVCAVQLPGRASRSRESPYDRLKQLVEALAPAVLP--YLDRPYAFFGHSMGALIAFELTRRLRREADTSPAHLFVSGRRAPQL---PRTNPPIHDLPEAEFVQALRRLNGTPDEVLAHPELMELMLPLLRADFAAVGTYEYTPEPA------LACPITAYGGLQDHEVSRAQLEAWRTQTTGGFTLRMLPGDHFYLQ-TGRALLLRSLFRELHELLLTTT 255          
BLAST of mRNA_S-firma_M_contig911.20055.1 vs. uniprot
Match: A0A326U590_9CHLR (Surfactin synthase thioesterase subunit n=2 Tax=Thermosporothrix TaxID=768650 RepID=A0A326U590_9CHLR)

HSP 1 Score: 185 bits (469), Expect = 1.980e-50
Identity = 96/236 (40.68%), Postives = 139/236 (58.90%), Query Frame = 1
Query:  103 WVVCRRARPDASVRLFCAAWAGGSATSFNKWPARLPEAVELHALQLPGRMSRSKEECLTSLPEIVERAAEALIAKGLLDKPFAMFGHSFGSLVMFELVRKLAEIAGKTPLCLIVSGCRPPDMCVGPGFSPAVSQLPRDALVDHLVNLGGMPAELRDQTELVDYFLPPIRADYTAFESYRYGPRPEDDDCPPISCPLVCLGGEEDSAAPQSDLEHWASFTTGDFRLKMFDGGHFFLQ 810
            W++C +    A +RL C  +AGG A+++  W  +LP+ +EL A+QLPG  +R KE+  T LP +VE  AEAL+   +LD+PFA+FGHS G+L+ FEL R L + A ++P  L +SGCR   +   P   P V  L  + L+D+L    G P E+    E++   LP  RAD+T +E+Y+Y  + E+    P+SCP+   GG +DS+     L+ W   T G F   M  G HFFLQ
Sbjct:   10 WLICPQTAQQARLRLLCLPYAGGGASAYRSWQQQLPDTIELCAVQLPGHETRLKEQAYTHLPSLVEAMAEALLP--VLDRPFAIFGHSMGALLSFELTRYLRKHAQRSPEHLFLSGCRAAHL---PRTEPDVHTLSDEGLIDYLRRFNGTPEEILQNEEMMQLLLPIFRADFTLYETYQY--QHEE----PLSCPITVFGGHQDSSVSYQQLQAWRDHTRGAFAAHMLPGNHFFLQ 234          
BLAST of mRNA_S-firma_M_contig911.20055.1 vs. uniprot
Match: A0A6J4NG05_9BACT (Thioesterase in siderophore biosynthesis gene cluster n=1 Tax=uncultured Gemmatimonadetes bacterium TaxID=203437 RepID=A0A6J4NG05_9BACT)

HSP 1 Score: 184 bits (466), Expect = 5.990e-50
Identity = 102/260 (39.23%), Postives = 139/260 (53.46%), Query Frame = 1
Query:   85 SAALEKWVVCRRARPDASVRLFCAAWAGGSATSFNKWPARLPEAVELHALQLPGRMSRSKEECLTSLPEIVERAAEALIAKGLLDKPFAMFGHSFGSLVMFELVRKLAEIAGKTPLCLIVSGCRPPDMCVGPGFSPAVSQLPRDALVDHLVNLGGMPAELRDQTELVDYFLPPIRADYTAFESYRYGPRPEDDDCPPISCPLVCLGGEEDSAAPQSDLEHWASFTTGDFRLKMFDGGHFFLQGQGEPAVLEALSDVLAPL 864
            + +L +W +  R  P A VRLFC  +AGG A+ FN WP  LP  VE+  +Q PGR +R  E  + +L E+ +     L    LLD+PF +FGHS G L+ FE+ R+L    G  P  L+ SG   P +   P   P +  LP D  +D L    G P E+    E+++   P IRAD++  E+YRY P P      P+  P+   GGE D   P+  +E W   TTGDFR++MF G HFFL    +  VL AL   L P+
Sbjct:    4 AGSLNRWTLIPRPNPAARVRLFCFPYAGGGASIFNTWPRALPAEVEVVGVQPPGREARIGEAPIGNLHELADAIHRELTP--LLDRPFVLFGHSNGGLMAFEVARRLRRAGGPMPRLLVASGRPAPQV---PDEDPPIHALPYDEFIDALRRYNGTPEEILANAEIMELLEPVIRADFSLGETYRYDPEP------PLDVPITAFGGERDDEVPRDQVEAWREQTTGDFRMQMFPGDHFFLNSDRDE-VLAALLRELRPI 251          
BLAST of mRNA_S-firma_M_contig911.20055.1 vs. uniprot
Match: A0A6P1A9W5_9CYAN (Thioesterase n=1 Tax=Kamptonema sp. SIO1D9 TaxID=2607808 RepID=A0A6P1A9W5_9CYAN)

HSP 1 Score: 179 bits (453), Expect = 3.730e-48
Identity = 97/254 (38.19%), Postives = 143/254 (56.30%), Query Frame = 1
Query:   82 SSAALEKWVVCRRARPDASVRLFCAAWAGGSATSFNKWPARLPEAVELHALQLPGRMSRSKEECLTSLPEIVERAAEALIAKGLLDKPFAMFGHSFGSLVMFELVRKLAEIAGKTPLCLIVSGCRPPDMCVGPGFSPAVSQLPRDALVDHLVNLGGMPAELRDQTELVDYFLPPIRADYTAFESYRYGPRPEDDDCPPISCPLVCLGGEEDSAAPQSDLEHWASFTTGDFRLKMFDGGHFFLQGQGEPAVLEAL 843
            +++    WV C +  P A +RLFC  +AGGSA SF  W  RLP  +E+  ++LPGR  R  E   T L  +++   +A++    L+KPFA FGHS G+++ FEL + LA+    +P+ L VSG RPP +   P   P +  LP    +  L    G P E+ +  EL++ FLP +RAD+   E+Y Y P+P       ++CP+   GG +D  A  SDL+ W   T  DF L+MF G HFF+    E ++L++L
Sbjct:    3 TTSTFNNWVTCPKPNPQAKLRLFCFHYAGGSALSFRTWADRLPNYIEVCPVELPGRGIRLMEPPFTRLQPLLQALEKAILPS--LNKPFAFFGHSMGAVLSFELAQLLAKNHHLSPVQLFVSGRRPPQI---PDPDPPLHNLPEATFLKELRRYNGTPEEVLNNAELMELFLPTLRADFAVLETYVYTPKPR------LNCPISAFGGWDDWKASASDLQAWEELTNADFSLEMFPGDHFFIYFS-ESSLLQSL 244          
BLAST of mRNA_S-firma_M_contig911.20055.1 vs. uniprot
Match: A0A2V7UAP5_9BACT (Putative thioesterase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V7UAP5_9BACT)

HSP 1 Score: 177 bits (448), Expect = 2.370e-47
Identity = 102/252 (40.48%), Postives = 141/252 (55.95%), Query Frame = 1
Query:  103 WVVCRRARPDASVRLFCAAWAGGSATSFNKWPARLPEAVELHALQLPGRMSRSKEECLTSLPEIVERAAEALIAKGLLDKPFAMFGHSFGSLVMFELVRKLAEIAGKTPLCLIVSGCRPPDMCVGPGFSPAVSQLPRDALVDHL-VNLGGMPAELRDQTELVDYFLPPIRADYTAFESYRYGPRPEDDDCPPISCPLVCLGGEEDSAAPQSDLEHWASFTTGDFRLKMFDGGHFFLQGQGEPAVLEALSDVL 855
            W++  R RP A +RL C  +AGG+A+++  W   LP  +++  +QLPGR SR +E       ++V+ AAEAL  +  LD PFA+FGHS G++V FEL R+L   +  +P+ L VSG   P     P   P ++QLP    V+ L    GG+P E+  + EL+   LP +RAD    ESY Y   P      P+ C L C GG++D      DLE W   T G F L+ F GGHFF++   E  VL ALS+ L
Sbjct:    7 WILRSRPRPGARLRLLCFPYAGGAASAYRSWTEALPAEIDVCPIQLPGRGSRFREAPFRRASDLVQAAAEAL--RPYLDLPFALFGHSMGAVVAFELARELRRRSWPSPILLAVSGREAPHR---PDPDPPLAQLPDAEFVEQLRARYGGIPDEVLAEKELLQMLLPVLRADVFLLESYVYAEEP------PLDCTLSCFGGQQDRHLRHEDLEAWREQTRGSFTLRTFPGGHFFIESARE-VVLRALSEDL 246          
BLAST of mRNA_S-firma_M_contig911.20055.1 vs. uniprot
Match: UPI001574BDD2 (alpha/beta fold hydrolase n=1 Tax=Rhizobium skierniewicense TaxID=984260 RepID=UPI001574BDD2)

HSP 1 Score: 176 bits (447), Expect = 3.480e-47
Identity = 95/240 (39.58%), Postives = 135/240 (56.25%), Query Frame = 1
Query:  103 WVVCRRARPDASVRLFCAAWAGGSATSFNKWPARLPEAVELHALQLPGRMSRSKEECLTSLPEIVERAAEALIAKGLLDKPFAMFGHSFGSLVMFELVRKLAEIAGKTPLCLIVSGCRPPDMCVGPGFSPAVSQLPRDALVDHLVNLGGMPAELRDQTELVDYFLPPIRADYTAFESYRYGPRPEDDDCPPISCPLVCLGGEEDSAAPQSDLEHWASFTTGDFRLKMFDGGHFFLQGQGE 822
            W+    +   A VRLFC  +AGG+A  +  WP  L   V++  L LPGR  R +E+ L  + +I ++AAEAL+    LD+P+A+FGHS G+ V FE+ R+L       P CL VSG   P +   P     +  LP DA +D ++ L G P E+    +L+D  LP +RAD+ A E+Y   P P      P++CP+V LGG ED   P + +E W   +TG FR + F G HFF++ Q E
Sbjct:   14 WITPMPSADRALVRLFCLPYAGGNAALYRDWPKWLGPKVDVCPLHLPGRGRRFREKPLYRVSDIADQAAEALLQH--LDRPYALFGHSMGASVAFEIARRLRRHGAPEPGCLFVSGRSAPHL---PKEGDNIHALPDDAFIDAVMRLNGSPPEVLKHPDLIDLILPTLRADFEAVETYHLTPEP------PLTCPIVALGGREDPDLPATSIEAWRVHSTGTFRHESFPGDHFFIRAQDE 242          
BLAST of mRNA_S-firma_M_contig911.20055.1 vs. uniprot
Match: A0A367RSR1_9NOSO (Gramicidin dehydrogenase n=1 Tax=Nostoc minutum NIES-26 TaxID=1844469 RepID=A0A367RSR1_9NOSO)

HSP 1 Score: 176 bits (445), Expect = 5.470e-47
Identity = 98/255 (38.43%), Postives = 135/255 (52.94%), Query Frame = 1
Query:   91 ALEKWVVCRRARPDASVRLFCAAWAGGSATSFNKWPARLPEAVELHALQLPGRMSRSKEECLTSLPEIVERAAEALIAKGLLDKPFAMFGHSFGSLVMFELVRKLAEIAGKTPLCLIVSGCRPPDMCVGPGFSPAVSQLPRDALVDHLVNLGGMPAELRDQTELVDYFLPPIRADYTAFESYRYGPRPEDDDCPPISCPLVCLGGEEDSAAPQSDLEHWASFTTGDFRLKMFDGGHFFLQGQGEPAVLEALSDVL 855
            +   WV C +  P AS+RLFC  +AGGS+  F  W A LP  VE+  ++LPGR S+ +    T L  +V   A  L+     DKPFA FGHS G+LV FE+ R L +     P+ L V+G R P +   P   P V  LP  A  D L  L G P  + +  EL++  +P +RAD+   E+Y Y P+       P+ CP+   GG EDS     +++ W   T   F L+MFDG HFFL    +  +L++LS  L
Sbjct:    6 SFNSWVTCLQPNPQASLRLFCFPYAGGSSLIFRTWSANLPATVEVCPIELPGRGSQMRSAAFTRLEPLVAAIAPTLVPYS--DKPFAFFGHSMGALVSFEVTRLLRQEYNLHPVHLFVAGRRAPQI---PDPKPPVHNLPEPAFKDELRRLNGTPTVVLENPELMELLIPTLRADFAVHETYIYTPQA------PLDCPIAAFGGLEDSEVSYDEIQGWQEQTNAAFSLQMFDGDHFFLHS-AQSLLLKSLSQKL 248          
BLAST of mRNA_S-firma_M_contig911.20055.1 vs. uniprot
Match: A0A1Z4J274_9CYAN (Thioesterase n=3 Tax=Nostocales TaxID=1161 RepID=A0A1Z4J274_9CYAN)

HSP 1 Score: 175 bits (444), Expect = 7.380e-47
Identity = 101/259 (39.00%), Postives = 136/259 (52.51%), Query Frame = 1
Query:   79 MSSAALEKWVVCRRARPDASVRLFCAAWAGGSATSFNKWPARLPEAVELHALQLPGRMSRSKEECLTSLPEIVERAAEALIAKGLLDKPFAMFGHSFGSLVMFELVRKLAEIAGKTPLCLIVSGCRPPDMCVGPGFSPAVSQLPRDALVDHLVNLGGMPAELRDQTELVDYFLPPIRADYTAFESYRYGPRPEDDDCPPISCPLVCLGGEEDSAAPQSDLEHWASFTTGDFRLKMFDGGHFFLQGQGEPAVLEALSDVL 855
            M+SA +  WV C +  P AS+RLFC  +AGGS+  F  W   LP  VE+  ++LPGR ++ K    T L  +V+  A  L+    LDKPFA FGHS G LV FELVR L +     P  L VSG R P +   P   P +  LP     + L  L G P  +    EL+   +P +RAD+   E+Y Y   P      P++CP+   GG ED  A   +L+ W + T   F L+MF G HFFL    +  +L++LS  L
Sbjct:    1 MTSARIHSWVTCPQPNPQASLRLFCFPYAGGSSVIFRTWSRSLPTTVEVCPIELPGRGTQMKLPAFTQLQPLVQAIAPVLLPH--LDKPFAFFGHSMGGLVSFELVRLLRKEYNIIPDHLFVSGRRAPQI---PDPKPPIHALPEPEFKEELRRLNGTPEAVLQNAELMQLLVPILRADFAVLETYVYTTEP------PLNCPISAYGGSEDEEASYDELQAWQNQTNAAFSLQMFTGDHFFLHS-AQSVLLQSLSQEL 247          
BLAST of mRNA_S-firma_M_contig911.20055.1 vs. uniprot
Match: A0A7V4U0V4_9BACT (Thioesterase n=1 Tax=Caldithrix abyssi TaxID=187145 RepID=A0A7V4U0V4_9BACT)

HSP 1 Score: 174 bits (442), Expect = 1.600e-46
Identity = 94/254 (37.01%), Postives = 139/254 (54.72%), Query Frame = 1
Query:   97 EKWVVCRRARPDASVRLFCAAWAGGSATSFNKWPARLPEAVELHALQLPGRMSRSKEECLTSLPEIVERAAEALIAKGLLDKPFAMFGHSFGSLVMFELVRKLAEIAGKTPLCLIVSGCRPPDMCVGPGFSPAVSQLPRDALVDHLVNLGGMPAELRDQTELVDYFLPPIRADYTAFESYRYGPRPEDDDCPPISCPLVCLGGEEDSAAPQSDLEHWASFTTGDFRLKMFDGGHFFLQGQGEPAVLEALSDVLA 858
            + WV   + + +A +RLFC  +AGG++T+F  WP  LPE +E+ A+++PG  SR  E+ +  L  +V+  AE +     LD+PFA FGHS GSL+ FEL   L    G  P+ L  SG   P +   P     +  LP+   V H+ N  G P E+ +  EL+D  +P +RAD+   E+Y+Y P+P      P +CP+   GG +D +  + DL+ W   T+G F L+MF G HF+L       V     D+LA
Sbjct:    8 DSWVTIPKPQANARLRLFCLPFAGGNSTAFRNWPDYLPETMEVAAVEIPGHGSRLAEDTIRRLIPLVKAIAEGI--DPYLDRPFAFFGHSMGSLLSFELAHYLRLKKGVEPVHLFFSGRGAPHL---PAREEPIHGLPQAEFVQHIRNYNGTPKEVLEHQELMDILIPILRADFEVCETYQYFPKP------PFNCPITAFGGLQDPSTTKDDLQGWKKHTSGAFNLRMFPGDHFYLLEAQTTLVHTIARDILA 250          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig911.20055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUF1_9PHAE2.520e-13374.52Thioesterase domain-containing protein n=2 Tax=Ect... [more]
A0A2V8RTA5_9BACT4.150e-5139.70Putative thioesterase n=1 Tax=Acidobacteria bacter... [more]
A0A326U590_9CHLR1.980e-5040.68Surfactin synthase thioesterase subunit n=2 Tax=Th... [more]
A0A6J4NG05_9BACT5.990e-5039.23Thioesterase in siderophore biosynthesis gene clus... [more]
A0A6P1A9W5_9CYAN3.730e-4838.19Thioesterase n=1 Tax=Kamptonema sp. SIO1D9 TaxID=2... [more]
A0A2V7UAP5_9BACT2.370e-4740.48Putative thioesterase n=1 Tax=Acidobacteria bacter... [more]
UPI001574BDD23.480e-4739.58alpha/beta fold hydrolase n=1 Tax=Rhizobium skiern... [more]
A0A367RSR1_9NOSO5.470e-4738.43Gramicidin dehydrogenase n=1 Tax=Nostoc minutum NI... [more]
A0A1Z4J274_9CYAN7.380e-4739.00Thioesterase n=3 Tax=Nostocales TaxID=1161 RepID=A... [more]
A0A7V4U0V4_9BACT1.600e-4637.01Thioesterase n=1 Tax=Caldithrix abyssi TaxID=18714... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig911contigS-firma_M_contig911:22722..26714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score403.3
Seed ortholog evalue8.8e-110
Seed eggNOG ortholog2880.D8LKB7
Preferred nameOLAH
KEGG rclassRC00014,RC00039
KEGG koko:K01071
KEGG ReactionR04014,R08157,R08158
KEGG Pathwayko00061,ko01100,map00061,map01100
GOsGO:0003674,GO:0003824,GO:0004312,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016295,GO:0016296,GO:0016297,GO:0016740,GO:0016746,GO:0016747,GO:0016787,GO:0016788,GO:0016790,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0047381,GO:0051791,GO:0051792,GO:0071704,GO:0072330,GO:1901576
EggNOG free text desc.dodecanoyl-[acyl-carrier-protein] hydrolase activity
EggNOG OGs2RGSQ@2759,COG3208@1
EC3.1.2.21
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionfatty acid-ACP thioesterase
Ec32 orthologEc-01_009660.1
Exons6
Model size1945
Cds size792
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig911.20055.1prot_S-firma_M_contig911.20055.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig911 23797..26636 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828737.6578262-UTR-S-firma_M_contig911:22721..237961622828737.6578262-UTR-S-firma_M_contig911:22721..23796Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig911 22722..23796 -
1697105132.22872-UTR-S-firma_M_contig911:22721..237961697105132.22872-UTR-S-firma_M_contig911:22721..23796Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig911 22722..23796 -
1622828737.7556522-UTR-S-firma_M_contig911:26636..267141622828737.7556522-UTR-S-firma_M_contig911:26636..26714Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig911 26637..26714 -
1697105132.3212488-UTR-S-firma_M_contig911:26636..267141697105132.3212488-UTR-S-firma_M_contig911:26636..26714Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig911 26637..26714 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828737.6736553-CDS-S-firma_M_contig911:23796..240461622828737.6736553-CDS-S-firma_M_contig911:23796..24046Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig911 23797..24046 -
1697105132.2416625-CDS-S-firma_M_contig911:23796..240461697105132.2416625-CDS-S-firma_M_contig911:23796..24046Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig911 23797..24046 -
1622828737.6896715-CDS-S-firma_M_contig911:24544..246991622828737.6896715-CDS-S-firma_M_contig911:24544..24699Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig911 24545..24699 -
1697105132.2549784-CDS-S-firma_M_contig911:24544..246991697105132.2549784-CDS-S-firma_M_contig911:24544..24699Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig911 24545..24699 -
1622828737.704291-CDS-S-firma_M_contig911:25233..253861622828737.704291-CDS-S-firma_M_contig911:25233..25386Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig911 25234..25386 -
1697105132.2711914-CDS-S-firma_M_contig911:25233..253861697105132.2711914-CDS-S-firma_M_contig911:25233..25386Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig911 25234..25386 -
1622828737.7183857-CDS-S-firma_M_contig911:25806..258641622828737.7183857-CDS-S-firma_M_contig911:25806..25864Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig911 25807..25864 -
1697105132.2832448-CDS-S-firma_M_contig911:25806..258641697105132.2832448-CDS-S-firma_M_contig911:25806..25864Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig911 25807..25864 -
1622828737.7308927-CDS-S-firma_M_contig911:26067..261651622828737.7308927-CDS-S-firma_M_contig911:26067..26165Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig911 26068..26165 -
1697105132.295151-CDS-S-firma_M_contig911:26067..261651697105132.295151-CDS-S-firma_M_contig911:26067..26165Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig911 26068..26165 -
1622828737.7438262-CDS-S-firma_M_contig911:26558..266361622828737.7438262-CDS-S-firma_M_contig911:26558..26636Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig911 26559..26636 -
1697105132.3098474-CDS-S-firma_M_contig911:26558..266361697105132.3098474-CDS-S-firma_M_contig911:26558..26636Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig911 26559..26636 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig911.20055.1

>prot_S-firma_M_contig911.20055.1 ID=prot_S-firma_M_contig911.20055.1|Name=mRNA_S-firma_M_contig911.20055.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=264bp
MSSAALEKWVVCRRARPDASVRLFCAAWAGGSATSFNKWPARLPEAVELH
ALQLPGRMSRSKEECLTSLPEIVERAAEALIAKGLLDKPFAMFGHSFGSL
VMFELVRKLAEIAGKTPLCLIVSGCRPPDMCVGPGFSPAVSQLPRDALVD
HLVNLGGMPAELRDQTELVDYFLPPIRADYTAFESYRYGPRPEDDDCPPI
SCPLVCLGGEEDSAAPQSDLEHWASFTTGDFRLKMFDGGHFFLQGQGEPA
VLEALSDVLAPLY*
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mRNA from alignment at S-firma_M_contig911:22722..26714-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig911.20055.1 ID=mRNA_S-firma_M_contig911.20055.1|Name=mRNA_S-firma_M_contig911.20055.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=3993bp|location=Sequence derived from alignment at S-firma_M_contig911:22722..26714- (Sphaerotrichia firma Sfir_13m male)
CAAGCAAGGCCTTGTCTCTCTTGCTCCTACTTGACCCTCTCACAGCGCCG CCAGCAGCTTTCTCGCTTCCTCTAAAGCATGAGCTCTGCTGCGCTGGAGA AGTGGGTTGTGTGTCGTCGGGCAAGACCGGACGCCTCAGTTCGGCTCTTC TGCGCGGTAAGAAACGACAGGGTGTTTCAATCAAGAGTTGGTATCAGAGG CAACCTGTACGTACATGCACACACCGCCAGGCATCCGCAGCAGCAAGTAG GTGTAGTGTGTCCTCTCGCTCCCCAACAGCAACGGTTTGGCAAGCTACTT CCTGTAACACGCAAGTTGAACGAAGGTGGCGCTGAACCATCACGCTCCTT GCTCTATCCCAGATTGCACTTACGATGCATGCTGAGCGGATTTCTTGTTC TTCACATTTCTCCGCGCACCCATATACCCATATCCGCGCGGTTTTCGGCC CGATCTCTGGATCACAAGACGTGTATCTGCGTTTCTTGATAATCTGTCGT TGCTCTGGTTATCGTGCGTTCGACGATGACACAAAATTGATTAAAACAGG CATGGGCGGGCGGCAGCGCGACGTCGTTCAACAAATGGCCGGCGCGCCTT CCGGAGGCGGTCGAACTCCACGCTCTCCAGCTGCCTGGAAGGATGAGGTC AGCATGTAGTACATACGGCGCTAAACCACCCCACCGGTTTCGAGTAGCGC ATGCCGCCGGAAGCTAACTAATGCTCGGGTATGTTCCCGTTCTCTTTTGC AACGTTTGTATCTGCCATGCACCATGCTCATCTTTGAAATGGAACCTCAC ACACACCCTGTGTGCACCACGTGACATGCTGGGGATGGCGGCTGCAACAG CCGGTCGAAGGAGGAATGCCTGACATCCCTCCCTGAAATCGTTGAACGGG CTGCCGAGGTGAGAGGGCTAGAGGAGAGGGGTGGGATCTTTCGCTTTCTA TGTACGAAGTAGCTTTGAGGTGGTGCTCGATTGGGGGTGTTTCGTGGAGG CGAGGGATGCAGAGGGAAGCGAGTGGGAGACATCGAGAGGGTTCGGGACA GATGGTTGGGGAGCGGGGGAAATGGGTGGGCAGCATATTGAAGAAGAGAA AATGGCCGGTAAGCAGAGACACACGTGTTCGAGGTAGAGACCCAGAGAGG AGTGAGAGATGGTGCATTCTCTTGTTTTGGGTGCGAAAGCTGGCGATTGG TAGATATACGAGTACACAGCAGGGTTTTGGTTGAGCAGTACATAGATGCT GCACTAGATCTCAAGCGCTCATTCACCTCCATCCTTGGACCACGAATCGC TAACGCGACGATCGGCCACCCTCGCCAGGCCCTGATTGCCAAGGGACTGC TCGACAAGCCGTTCGCCATGTTCGGGCACAGCTTTGGGTCTCTCGTGATG TTCGAGCTCGTGCGAAAGCTCGCGGAAATCGCTGGAAAGACCCCATTGTG CCTCATCGTATCCGGGTGCCGACCTCCAGATGTAAGCCGTAGCAGTTTTG CTCGCCAGAAACCAAGCACAATATGAAGGGCCCTGCGAACTCGTGTTATC GAATGCCCCTGTTGATGAATGTATCGATACAACAGTAGTTGATGCAAGAG CCAACATAACAATTTCACGACCATTTCACGATTTTGCGGGATGCAACCTG TTTCTGCCGTCACACGCGAGGGACGCCCCCCCTGACGCGCGTCGGCCGCT CTTTTTTAGCAGCCATTGTACCAACCTATGAACAACAGCTATTACAGGGC GACATGTGATAGTAAACTGCTCTTTACCTCATATCTGTAGCTCTCGCATT TCCTCTCATATCGGGTATCAAACTCACGGGAAGATGTTCTGTGCGCATTG TCTTCGTTAGAGTAGTCGTGTTAGCCCACCCCAGTTCGGCAGCACGAATC CCCGATTTCATTTCTTCTCTTCTCGGTGAACCCCTTCTATTGCGTGTGGT TTGTTCATACACATGCCCGCAAATGACGCTGCTGGTGGCGCGTGTGTTTG GACGCTTGCTTTCAGATGTGCGTCGGGCCTGGGTTCTCGCCCGCGGTAAG CCAGCTGCCGCGGGACGCTCTTGTGGACCACCTCGTCAACCTCGGGGGTA TGCCCGCTGAGCTCAGGGATCAAACAGAGCTTGTCGACTATTTTCTTCCC CCGATTCGAGCGGACTACACGTGAGAAAGAGCCAAGAATCCTCGGCTAGG AGGGAACCCCCAGCGATTCCTCTTTTTTTTTTCCAGAGGGACGTTTACTT TGGTGGAGGATGAGAGGTGCAATTTTTCAAAACTTTGAGAAGCATACACA CCCAATGTGTAAGGTGCCAGGGTTTGCGTATTCTAGGCCGGGTTCTGCAG CGCCGAAGGGACAAACGTCATGTTTGCTGACACTCTTGTTTTGTGGTCGC ACTGCTTGTCAAGGCAGAAGACGGTTGCAGTGCTTGCCCCTCGTGTGAAC CCTTCGTTTTTTGTATTGTTGATGTAGGTTGTTCTACAGCAGTGCATGGA CGACGTGGTAGTTCTGTTTCCAGAGAGCGGGTTTTCGTCGGTTGACCGAG AAGTGTACATGCGGTGTGACAGCTGATACCGGATGTGGATGCACTGCACG CCTAGATTTGCATCTTCTTGATTACCCCCCCCCCGCTCCCCGCCCCACAA TTTGATCGTTCACAACAGCGCCTTTGAGAGTTACAGGTACGGACCTCGTC CCGAGGACGACGACTGCCCGCCAATATCGTGTCCCCTGGTCTGTCTTGGC GGGGAGGAGGACAGCGCGGCCCCGCAGAGCGATTTAGAACACTGGGCGAG CTTTACGACGGGCGATTTCCGCTTGAAAATGTTCGACGGGGGGCACTTCT TCTTGCAGGGCCAGGGAGAGCCCGCGGTCCTAGAAGCTTTGAGCGACGTA CTGGCCCCACTGTACTGAACGGAAACACAAAACCTTGGGGATATGCACCA CCGTTTCTTTTGTCGACAGTTCCAAGCACGCGGAATTTCACTGTCCTTGG GCGCTGGCTATGGTGGGGGGGCGGAGACAGTTCTTCTTAGAGAGAGGGCT AGGGAGGAAGGTTTAGGGGTTTTGGACTGCATGTGTGTTGAATATTGTGT TGTTGGCTCCACGGCGGAGATGCTTGTGCGTGTCTTGGATGGCGGTTTGG GAGATGATGCTGTCAAATCTCCGGGAGGACAGGCACGTTTGTTTCGTGAT GTTCATGGAAGAATGTGGGTTTGTGCGTGTGATTTTGCGTGGGTGGGGGG GTTTCATGCTAGTTTGTTTGGGGTGGGCCCGAAGCGATGCACGCCGGCTG ATTGGGCCGACGTTTGGCACACGCCGGCTGATTTGGGCCGACGCTTGGCG TGTCGGCCTTCGCTGGTTTACTGCGTTTGGCTTTTTTCGGTGCTTGCATG AAGAACGTTCCATTTATGTCAGGACAAGTTTACCTTCGAGGACGAATTGT TTTGCGAAGCTTTTTCTGGTTGCCGGTACCCTGACACCGACATGAGAAGC AGCAACCGCCGCCCCAAGGGGCCTGGGCTGCGAGCACCAGCGGACGGCGT TGTCTTCAACCCACTCGTTGACCATTTGGTTCGTTTTTCTTTCTGTCCGC AAAATGCAGTGCCCAGAAATGCGGTCTCTTGATCAGCTAGGAAGCATTTC TCGACGGGTGATCTGCCACCACTTGCCTCACGCAACAGTGTTGACCTTTG ACTCAGCTCGAAGAAGCTAATACCGTTGGTGATTCCCTTTGCAAAAGTCC GGCAGTAGTGTACATGATAAGTTAGTTGCCCGACCGTAGTTAAGAGTGGA GGCAGGGATGGTGAGACAGGCTAGTGTTCTGCGTGTCCCCTGCAACGCCA CATGTTTACACGGCAATCAGTGCCAATTTTTTATAACAGGCCAACACTTA GCGGCTGATAGAGTGTACCGTCAGTTGCAGCTTCAAATAAACATGCTAGT TTACTCGACGCTGCGATATTCTGTGCAATCCTACCGACTGCTG
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Coding sequence (CDS) from alignment at S-firma_M_contig911:22722..26714-

>mRNA_S-firma_M_contig911.20055.1 ID=mRNA_S-firma_M_contig911.20055.1|Name=mRNA_S-firma_M_contig911.20055.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1584bp|location=Sequence derived from alignment at S-firma_M_contig911:22722..26714- (Sphaerotrichia firma Sfir_13m male)
ATGAGCTCTGCTGCGCTGGAGAAGTGGGTTGTGTGTCGTCGGGCAAGACC
GGACGCCTCAGTTCGGCTCTTCTGCGCGATGAGCTCTGCTGCGCTGGAGA
AGTGGGTTGTGTGTCGTCGGGCAAGACCGGACGCCTCAGTTCGGCTCTTC
TGCGCGGCATGGGCGGGCGGCAGCGCGACGTCGTTCAACAAATGGCCGGC
GCGCCTTCCGGAGGCGGTCGAACTCCACGCTCTCCAGCTGCCTGGAAGGA
TGAGGCATGGGCGGGCGGCAGCGCGACGTCGTTCAACAAATGGCCGGCGC
GCCTTCCGGAGGCGGTCGAACTCCACGCTCTCCAGCTGCCTGGAAGGATG
AGCCGGTCGAAGGAGGAATGCCTGACATCCCTCCCTGAAATCGTTGAACG
GGCTGCCGAGCCGGTCGAAGGAGGAATGCCTGACATCCCTCCCTGAAATC
GTTGAACGGGCTGCCGAGGCCCTGATTGCCAAGGGACTGCTCGACAAGCC
GTTCGCCATGTTCGGGCACAGCTTTGGGTCTCTCGTGATGTTCGAGCTCG
TGCGAAAGCTCGCGGAAATCGCTGGAAAGACCCCATTGTGCCTCATCGTA
TCCGGGTGCCGACCTCCAGATGCCCTGATTGCCAAGGGACTGCTCGACAA
GCCGTTCGCCATGTTCGGGCACAGCTTTGGGTCTCTCGTGATGTTCGAGC
TCGTGCGAAAGCTCGCGGAAATCGCTGGAAAGACCCCATTGTGCCTCATC
GTATCCGGGTGCCGACCTCCAGATATGTGCGTCGGGCCTGGGTTCTCGCC
CGCGGTAAGCCAGCTGCCGCGGGACGCTCTTGTGGACCACCTCGTCAACC
TCGGGGGTATGCCCGCTGAGCTCAGGGATCAAACAGAGCTTGTCGACTAT
TTTCTTCCCCCGATTCGAGCGGACTACACATGTGCGTCGGGCCTGGGTTC
TCGCCCGCGGTAAGCCAGCTGCCGCGGGACGCTCTTGTGGACCACCTCGT
CAACCTCGGGGGTATGCCCGCTGAGCTCAGGGATCAAACAGAGCTTGTCG
ACTATTTTCTTCCCCCGATTCGAGCGGACTACACCGCCTTTGAGAGTTAC
AGGTACGGACCTCGTCCCGAGGACGACGACTGCCCGCCAATATCGTGTCC
CCTGGTCTGTCTTGGCGGGGAGGAGGACAGCGCGGCCCCGCAGAGCGATT
TAGAACACTGGGCGAGCTTTACGACGGGCGATTTCCGCTTGAAAATGTTC
GACGGGGGGCACTTCTTCTTGCAGGGCCAGGGAGAGCCCGCGGTCCTAGA
AGCTTTGAGCGACGTACTGGCCCCACTGTACTGACGCCTTTGAGAGTTAC
AGGTACGGACCTCGTCCCGAGGACGACGACTGCCCGCCAATATCGTGTCC
CCTGGTCTGTCTTGGCGGGGAGGAGGACAGCGCGGCCCCGCAGAGCGATT
TAGAACACTGGGCGAGCTTTACGACGGGCGATTTCCGCTTGAAAATGTTC
GACGGGGGGCACTTCTTCTTGCAGGGCCAGGGAGAGCCCGCGGTCCTAGA
AGCTTTGAGCGACGTACTGGCCCCACTGTACTGA
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