mRNA_S-firma_M_contig9109.20053.1 (mRNA) Sphaerotrichia firma Sfir_13m male
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Overview
Homology
BLAST of mRNA_S-firma_M_contig9109.20053.1 vs. uniprot
Match: A0A6H5KM36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM36_9PHAE) HSP 1 Score: 352 bits (902), Expect = 3.640e-117 Identity = 205/237 (86.50%), Postives = 216/237 (91.14%), Query Frame = 1
Query: 1 GGTASNLVTLIANGDVALSVSMTTVSTLLAAVVTGPLTKFLVGSMVDISAVTLMRATAQVVFLPVALGLLLNTRAKGVTRRLAPYTPLLCVALVAMICGSVVAANSSILLGSGAALIGAVLTLHAGGFAMGYGGMRACGFPEQVARTTSIEVGMQNSALAVVLAQRGLADPASAVPGAVSATCHSLIGSALAAYWRTGDRGIRAPP----PLGAAAGGAGEVEAE--ADVYDAGGGI 693
GGTASNLVTLIANGDVALSVSMTTVSTLLAAV+TGPLTKFLVG++VDISAVTLM+ATAQVVFLPVA+GLLLNTRAKG+TRRLAPYTPLLCVALVAMICGSVVAANSSILL SGAAL+GAVLTLHAGGFA+GYGGMRACGF EQ ARTTSIEVGMQNSALAVVLAQRGLADP SA+PGAVSATCHSLIGSALAAYWRTGDRG RA P AA GG GE + D+YDAGGGI
Sbjct: 251 GGTASNLVTLIANGDVALSVSMTTVSTLLAAVITGPLTKFLVGALVDISAVTLMKATAQVVFLPVAMGLLLNTRAKGITRRLAPYTPLLCVALVAMICGSVVAANSSILLRSGAALVGAVLTLHAGGFAVGYGGMRACGFTEQEARTTSIEVGMQNSALAVVLAQRGLADPLSAIPGAVSATCHSLIGSALAAYWRTGDRGPRAQPLPSTSTAAAVGGEGEQQQAKGVDLYDAGGGI 487
BLAST of mRNA_S-firma_M_contig9109.20053.1 vs. uniprot
Match: A0A835YU74_9STRA (Bile acid:sodium symporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU74_9STRA) HSP 1 Score: 211 bits (537), Expect = 4.570e-64 Identity = 127/210 (60.48%), Postives = 157/210 (74.76%), Query Frame = 1
Query: 1 GGTASNLVTLIANGDVALSVSMTTVSTLLAAVVTGPLTKFLVGSMVDISAVTLMRATAQVVFLPVALGLLLNTRAKGVTRRLAPYTPLLCVALVAMICGSVVAANSSILLGSGAALIGAVLTLHAGGFAMGYGGMRACGFPEQVARTTSIEVGMQNSALAVVLAQRGLADPASAVPGAVSATCHSLIGSALAAYWRTGDRGIRAPPPLGA 630
GGTASNLV LIA D+ALSV +T ST+LA T LT+ LVG +V +SA L+ +TAQVVF PVALGLLL ++A+G TRRL+PYTPL CVALVA ICGSVVA N++ + SGA L+ AV T+HAGGF +GY +A G E+ +RT SIEVGMQNSALAVVLA+ DP +A+PGA+SAT HS++GS LAA+WR +G+ P GA
Sbjct: 121 GGTASNLVALIAGADIALSVLLTAASTVLATAATPLLTRALVGGVVQVSARQLVVSTAQVVFAPVALGLLLASKAQGFTRRLSPYTPLACVALVACICGSVVAQNAAAVAASGARLVAAVATMHAGGFTLGYMAAKAAGLGERASRTVSIEVGMQNSALAVVLARSAFPDPLTALPGAISATVHSVLGSCLAAFWRA--KGLDKEQPEGA 328
BLAST of mRNA_S-firma_M_contig9109.20053.1 vs. uniprot
Match: D7FZU0_ECTSI (Na+-bile acid cotransporter (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZU0_ECTSI) HSP 1 Score: 208 bits (530), Expect = 5.280e-64 Identity = 120/127 (94.49%), Postives = 127/127 (100.00%), Query Frame = 1
Query: 1 GGTASNLVTLIANGDVALSVSMTTVSTLLAAVVTGPLTKFLVGSMVDISAVTLMRATAQVVFLPVALGLLLNTRAKGVTRRLAPYTPLLCVALVAMICGSVVAANSSILLGSGAALIGAVLTLHAGG 381
GGTASNLVTLIANGDVALSVSMTTVSTLLAAV+TGPLTKFLVG++VDISAVTLM+ATAQVVFLPVA+GLLLNTRAKG+TRRLAPYTPLLCVALVAMICGSVVAANSSILLGSGAAL+GAVLTLHAGG
Sbjct: 130 GGTASNLVTLIANGDVALSVSMTTVSTLLAAVITGPLTKFLVGALVDISAVTLMKATAQVVFLPVAMGLLLNTRAKGITRRLAPYTPLLCVALVAMICGSVVAANSSILLGSGAALVGAVLTLHAGG 256
BLAST of mRNA_S-firma_M_contig9109.20053.1 vs. uniprot
Match: L1JAR9_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JAR9_GUITC) HSP 1 Score: 196 bits (499), Expect = 3.260e-58 Identity = 121/216 (56.02%), Postives = 150/216 (69.44%), Query Frame = 1
Query: 1 GGTASNLVTLIANGDVALSVSMTTVSTLLAAVVTGPLTKFLVGSMVDISAVTLMRATAQVVFLPVALGLLLNTRAKGVTRRLAPYTPLLCVALVAMICGSVVAANSSILLGSGAALIGAVLTLHAGGFAMGYGGMRACGFPEQVARTTSIEVGMQNSALAVVLAQRGLADPASAVPGAVSATCHSLIGSALAAYWRTGDRGIRAP--PPLGAAAGG 642
GGTASNLVTLIA DVALSV MTTVST+ A ++T LT L GS+V + A L+ +T QVV PV LGL +NT A V + ++ TPLLCV LV++ICGSV+A +S + +G L+GAV+ LH GGF +GY R G+PE ++RT SIE GMQNSAL VVLA R ADP +A+P A+SATCHS++GS+ AAYWR G R P P G GG
Sbjct: 103 GGTASNLVTLIAKADVALSVLMTTVSTMAAPIMTPLLTSILAGSLVPVDASGLLISTLQVVLAPVGLGLAINTFAPAVCKMVSGVTPLLCVVLVSLICGSVIAQTASSFIAAGLPLLGAVIGLHLGGFLLGYFVPRILGYPEPISRTVSIETGMQNSALGVVLATRNFADPLTALPCAISATCHSVLGSSFAAYWRLGGRKKEEPKDPSRGNVIGG 318
BLAST of mRNA_S-firma_M_contig9109.20053.1 vs. uniprot
Match: W7U603_9STRA (Sodium bile acid symporter family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U603_9STRA) HSP 1 Score: 179 bits (454), Expect = 9.380e-51 Identity = 118/207 (57.00%), Postives = 141/207 (68.12%), Query Frame = 1
Query: 1 GGTASNLVTLIANGDVALSVSMTTVSTLLAAVVTGPLTKFLVGSMVDISAVTLMRATAQVVFLPVALGLLLNTRA-----KGVTRRLAPYTPLLCVALVAMICGSVVAANSSILLGSGAALIGAVLTLHAGGFAMGYGGMRACGFPEQVARTTSIEVGMQNSALAVVLAQRGLADPASAVPGAVSATCHSLIGSALAAYW-RTGDRG 603
GGTASNLVTL+A DVALS+SMT VSTL A +T LT L+GS+V + L+R T QVV LPVALGL+ N+ +TR L TPL+ LVA ICG VVA N++ +L SG +L+GAVL LH+ GF G+ RA GF QVA+T SIE GMQNSALAVVLA+ L P S +PGAVSA CHS++GS A W R GDRG
Sbjct: 202 GGTASNLVTLLAEADVALSISMTAVSTLTAGAMTPLLTSLLLGSLVPVDTAALLRTTLQVVLLPVALGLVTNSYLLPSLPPSLTRGLTRSTPLVSGLLVAAICGKVVATNAAAVLQSGGSLLGAVLALHSFGFFFGFWMARALGFSRQVAKTVSIETGMQNSALAVVLARSSLPHPLSGLPGAVSAVCHSVLGSLAAWVWSREGDRG 408
BLAST of mRNA_S-firma_M_contig9109.20053.1 vs. uniprot
Match: A0A7S4MZT7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MZT7_9STRA) HSP 1 Score: 167 bits (424), Expect = 1.220e-47 Identity = 116/213 (54.46%), Postives = 140/213 (65.73%), Query Frame = 1
Query: 1 GGTASNLVTLIANGDVALSVSMTTVSTLLAAVVTGPLTKFLVG-SMVDISAVTLMRATAQVVFLPVALGLLLNTRAKGVTRRLAPYTPLLCVALVAMICGSVVAANSSILLGSGAA------------LIGAVLTLHAGGFAMGYG-GMRACGFPEQVARTTSIEVGMQNSALAVVLAQRGLADPASAVPGAVSATCHSLIGSALAAYWRTGD 597
GGTASNLV+LIA DVALSV +T ST LA+VVT L K VG S V +S L ATA+VV PVALG+ LN RA +R + + P V LVA+ICG VVA N+S +LG A ++G+VLTLH+ GFA GY R F E+ +RT SIE GMQNSALAVVLA+ ADP +++PGA+SATCHS +GS LAAYWR D
Sbjct: 50 GGTASNLVSLIAGADVALSVLLTAASTALASVVTPLLVKLSVGGSAVAVSGAALCAATARVVLAPVALGMALNDRAPSFSRACSRFAPFASVVLVALICGGVVAQNASTVLGGAAGGAISASRLLLPRVLGSVLTLHSIGFAAGYAIPRRLLNFGERTSRTVSIETGMQNSALAVVLARSIGADPLASLPGALSATCHSCLGSVLAAYWRFAD 262
BLAST of mRNA_S-firma_M_contig9109.20053.1 vs. uniprot
Match: A0A7V4EK05_9BACT (Bile acid:sodium symporter family protein n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7V4EK05_9BACT) HSP 1 Score: 166 bits (420), Expect = 8.010e-47 Identity = 102/196 (52.04%), Postives = 135/196 (68.88%), Query Frame = 1
Query: 1 GGTASNLVTLIANGDVALSVSMTTVSTLLAAVVTGPLTKFLVGSMVDISAVTLMRATAQVVFLPVALGLLLNTRAKGVTRRLAPYTPLLCVALVAMICGSVVAANSSILLGSGAALIGAVLTLHAGGFAMGYGGMRACGFPEQVARTTSIEVGMQNSALAVVLAQRGLADPASAVPGAVSATCHSLIGSALAAYWR 588
GGTASN+VT +A DV LSV+MT STLLAAV+T LT L G+ VD+ A+ L R+T QVV +PV G+LLN A ++R + P P++ VA++ +I S++ A S++L +GA LIGAV LHA GF +GY G Q RT SIEVGMQNS L VVLA++ +PA+A+P A+S+ HS+IGSALA +WR
Sbjct: 107 GGTASNVVTFLAGADVGLSVTMTACSTLLAAVMTPTLTALLAGTRVDVDAMGLFRSTVQVVIVPVVAGVLLNRFAPRLSRAVQPVAPVVAVAVIVLIVASIIGAGRSLILSAGARLIGAVFALHACGFLLGYVLSALLGARLQARRTISIEVGMQNSGLGVVLARQNFTNPATAIPSAISSLFHSVIGSALAGWWR 302
BLAST of mRNA_S-firma_M_contig9109.20053.1 vs. uniprot
Match: A0A7S2Y1N2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1N2_9STRA) HSP 1 Score: 168 bits (426), Expect = 1.750e-46 Identity = 116/216 (53.70%), Postives = 143/216 (66.20%), Query Frame = 1
Query: 1 GGTASNLVTLIANGDVALSVSMTTVSTLLAAVVTGPLTKFLVGSMVDISAVTLMRATAQVVFLPVALGLLLNTRAKGVTRRLAPYTPLLCVALVAMICGSVVAANSSILL-------GSGAAL-------------IGAVLTLHAGGFAMGYGGMRACGFPEQVARTTSIEVGMQNSALAVVLAQRGLADPASAVPGAVSATCHSLIGSALAAYWR 588
GGTASNLVTLIA DVALSV++T++STLLA VVT +T LVG++V + A TL+ +T QVV PVA GL L A + R A TP++ V LVA+ICG+VVA N+ L +GAA+ + A+L+LHAGGFA+GY RA G ART SIEVGMQNSALA VLA + +DP A+PGAVSATCHS++GS LA WR
Sbjct: 198 GGTASNLVTLIAKADVALSVTLTSISTLLACVVTPLMTSMLVGTLVPLDAKTLLVSTLQVVLAPVAAGLGLKVFAPNLCRASADITPVVGVFLVALICGAVVAGNAPALATLAPAAAATGAAVSASSWFSSAPARCVAALLSLHAGGFALGYFAPRAIGAYPAEARTVSIEVGMQNSALAAVLAAKAFSDPMIALPGAVSATCHSIMGSFLATLWR 413
BLAST of mRNA_S-firma_M_contig9109.20053.1 vs. uniprot
Match: A0A2D6QUD6_9BACT (Transporter n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2D6QUD6_9BACT) HSP 1 Score: 165 bits (418), Expect = 2.340e-46 Identity = 103/202 (50.99%), Postives = 133/202 (65.84%), Query Frame = 1
Query: 1 GGTASNLVTLIANGDVALSVSMTTVSTLLAAVVTGPLTKFLVGSMVDISAVTLMRATAQVVFLPVALGLLLNTRAKGVTRRLAPYTPLLCVALVAMICGSVVAANSSILLGSGAALIGAVLTLHAGGFAMGYGGMRACGFPEQVARTTSIEVGMQNSALAVVLAQRGLADPASAVPGAVSATCHSLIGSALAAYWRTGDRGI 606
GGTASN+++ +A DVALSV+MT STLLA V+T LT L GS VD+ A L+ +T QVV LPV LG+ LN A +TR + P PL+ V + +I S++ A +L +GA L+ AV TLH GGF +GY R E+ ART SIEVGMQNS L VVLA++ A P A+P A+SA CHSL+GS +AA WR +G+
Sbjct: 107 GGTASNVISFLAKADVALSVTMTAFSTLLAVVMTPTLTALLAGSRVDVPAAGLLLSTVQVVILPVVLGVSLNRYAPRLTRAVLPVAPLVAVLTIVLIVASIIGAGKQDVLDAGARLLLAVFTLHIGGFGLGYAAGRWLLGQERAARTISIEVGMQNSGLGVVLARQNFASPLVAIPCAISAVCHSLVGSLVAALWRRSAKGL 308
BLAST of mRNA_S-firma_M_contig9109.20053.1 vs. uniprot
Match: A0A6N8WUU1_9BACT (Bile acid:sodium symporter family protein n=3 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A6N8WUU1_9BACT) HSP 1 Score: 164 bits (415), Expect = 4.470e-46 Identity = 104/200 (52.00%), Postives = 130/200 (65.00%), Query Frame = 1
Query: 1 GGTASNLVTLIANGDVALSVSMTTVSTLLAAVVTGPLTKFLVGSMVDISAVTLMRATAQVVFLPVALGLLLNTRAKGVTRRLAPYTPLLCVALVAMICGSVVAANSSILLGSGAALIGAVLTLHAGGFAMGYGGMRACGFPEQVARTTSIEVGMQNSALAVVLAQRGLADPASAVPGAVSATCHSLIGSALAAYWRTGDR 600
GGTASN++ IA DVALSV+MTT STLLAA+ T LT L G+ +D+ + L+ T QVV LPVA G LL R R+ P PL+ V + +I GSV+A N ++ +G L+ AVL+LHAGGF +GY R EQ ART +IEVGMQNS L VVLAQ+ A+P +AVP A+SA HSL+GS AA WR R
Sbjct: 107 GGTASNVIAFIARADVALSVTMTTASTLLAALATPALTALLAGNRIDVPVIGLLTDTVQVVILPVAAGALLKARFPRACDRVLPVAPLVAVLAIILIAGSVIAGNREQVIDAGLRLLLAVLSLHAGGFVLGYVAGRLWLRKEQAARTAAIEVGMQNSGLGVVLAQQNFANPLTAVPSAISAVLHSLVGSVAAALWRARPR 306 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9109.20053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_M_contig9109.20053.1 >prot_S-firma_M_contig9109.20053.1 ID=prot_S-firma_M_contig9109.20053.1|Name=mRNA_S-firma_M_contig9109.20053.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=232bp GGTASNLVTLIANGDVALSVSMTTVSTLLAAVVTGPLTKFLVGSMVDISAback to top mRNA from alignment at S-firma_M_contig9109:331..2252+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_M_contig9109.20053.1 ID=mRNA_S-firma_M_contig9109.20053.1|Name=mRNA_S-firma_M_contig9109.20053.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1922bp|location=Sequence derived from alignment at S-firma_M_contig9109:331..2252+ (Sphaerotrichia firma Sfir_13m male)back to top Coding sequence (CDS) from alignment at S-firma_M_contig9109:331..2252+ >mRNA_S-firma_M_contig9109.20053.1 ID=mRNA_S-firma_M_contig9109.20053.1|Name=mRNA_S-firma_M_contig9109.20053.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1392bp|location=Sequence derived from alignment at S-firma_M_contig9109:331..2252+ (Sphaerotrichia firma Sfir_13m male)back to top |