mRNA_S-firma_M_contig910.20046.1 (mRNA) Sphaerotrichia firma Sfir_13m male
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Overview
Homology
BLAST of mRNA_S-firma_M_contig910.20046.1 vs. uniprot
Match: D7G286_ECTSI (Centrin-1, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G286_ECTSI) HSP 1 Score: 1084 bits (2803), Expect = 0.000e+0 Identity = 967/2147 (45.04%), Postives = 1181/2147 (55.01%), Query Frame = 2
Query: 128 LFLDPSRAVGG---EWHRRRAAERQWARLLDERRCLEVAGIKAEAAEEARISPKGSTGARELSGLAAKLLEALIAELQSGSHVGRSTPPEEGERGGVQSSDEARSAVARLAFQAFDRDGNGALDVSDLADLLEVLKGIAGKPSTAGSGMGTSTGAAATGLGLEAAMHAMDEDQSGQIDIDEFIVAAEWAPPSSSGAWPPEPGARLHVKVRSNLAGGD----GRRTPAPDVVG--GMEAGKEYGGDDHSSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKATEHEGAKGVGAERGTKPYDKEKERKGRAVGGGGRAGIFGV--WRKTKTTGADAGAVANKPDGQKPSKRKRRDEKGQTQGQREEGDDAKRQGHQRTADHATGGDEQPASSATSTNGAPAQNPLHGRRALVS--------SGRLMLRGLRSAAGSPAADPWKRHSKTLTAVAEHEARTLLFRRARLRAQVDELARFRAARPPEFEAWSAVEFLEEHRETVSEITVEADASFVQTLHRNLRDAEEAVRHRATTRSSTPPTMISSTAGTTPPAPTGDGVLELAVAGTTALGASNTPGVNAEITDEGTVHEATSAAVPSDLDGKDDPDGDSAVVGGNGKGGGDGGTTATPGALASRRFFVRSLGRKVWRGRGGAGRNT-----------PRRSDPEFAEIVKAAEVDAAASRRRELKTAAGRADIARTVLRLKVNKAAASFAAT-AAAAEAEKE-------------------EISKAEALAATTATGLEAARASFLDGEARTTGPVETLATPXXXXXXXXXXAARALEQERKALVDKGVQLFGLFDADGSGAIDREELAPLLEQLGIWVSAEMAREVFPRLXXXXXXXXXXXXXXXXXXXEGVAFRQTPLSRMLRTGQSVRALGSSSRRLRNQVRASMISRSRATARAETWDSLSGLPVTPVPIPESPAPA------------GGHA----EDTNARLQLTQETDQQQEAR----QRCREESAGKEGEGAAPVGGVTGGRKRGRALAARAAERRRRTDEQEREAERAVLVKRAEEEAELRVKRHWRTQVGAAELRRAVDRVRGAGEAMDLTLRAWEAGVHTS---AAITSPHDLRRRREEACVCERLRHLFRLFDTSCDGCIDAEELGRLLSRLKLTVSEPEVAALLQKMDCDGSGDVDFVEFSDWWHTTGHTWSKRPGARVRSAAASLVATVAPVAAARRDARRALISSARSRARAEVKNALRLDGRNETVLLLAKTTAAAAVATANLTGNETPKASAG---ISSATR-------DVSAVAQDPIAAASIFGDTLGANGGG----GDGQGESSPNAGRMAAARASKLARAEAEAYADVKAALRTDAGRRELARRTRAVRLEWKAAVKAANRIARGKRPHRGPGK--TPGEA----------------ARQQQPANASMT------LVEFPFLWLLWRVHGSMTGGAANAGAGDASAVEIEPAELKYLGASLRQTLVGRVTRRVRGGEATILGSTLALGKTARVANASSTGGSRSPHTAAREVSSSSVAAPGAAIAAARAEDGDVMTLSGIFDDDSDDEIRSLKTLTRVSIGELMASLHQRYPDIPPVAAEGREGVAVTAPSSAPAAADTIDNFSNNNTTRTKAQTRADLADIARLRLRMFFTPGVFRTLAKEALLAEGRAFERHELARTLALEDGEPWRLAEVAATKTGVELAGDVAPADVDRLRATAAGVAKLSRALAQGEDLAAAECRSFLKTSAGRAELRATTAXXXXXXXXXXXXXXXTAAGSSRSGAITGVGTTKRAFSALNSLARDELRRAFVLCEADGMSGEISRAEAAHVLAYAGIPQTTVATAGRVRIPRQGKDKDARPGGRKPRHEGGGGQRRQHQHWHRRPQGLWSWQRKATNRSTKKSPDGGGKLLVKLLR---SFPNFRRTGGGRGRSRKDAGIRDSRRRRSSSSRAKICPTTNDHADGG-------VPGLEAKGPTTGTLDGRKLDDLDNGDND----GVERPGPGSDDHLQQDEDEELSRSEEXXXXDSVESDQTSDGMLSLDMDVVDDVTNDEGFELAEMEILLEAARARQTRLAKAASLGRLLARKVLTTYFTDTRDARMVLMSRARGAGRDKAMHKFENLLTIGVHD 6193
L+ D R GG E HRRR AERQWARLLDER L AG++AEAAEEARI+PKGS GA E + L A+LL AL ++L+ G G+S EE V +++EA + VARLAFQAFDRDGNG LDVSDLADLL VL+ IAG+P +A + +G+ GAAA G GLEAAM AMDED SGQ+DIDEF+ W G H + A G+ GR + P V G+ G G + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXS A E + VGA P + E++ A G+F V W K K A A N G + + KR+ +P+ ++T +P R++ S R +L S S ADPWKRH+KTL AVAE EARTLL RRARLRAQV ELARFRA RPPE++ WS+ +FLE+HRETV+EIT +AD+ FV+ LHRNLR+AEEAV+H + S P + PP P G +A A + +G+ + AT+ V DGG+ + SR + SLG + W GR G GR T R+ + AE VKAAE DAAA+RRR +T GRA+IAR V RLK ++ A+ + T AAAAEA E +++ A A++ G A D A+ T V L+T R ++R LV + QLF LFDADGSGAIDREELAPLL QLGIWV+A+MA XXXXXXXXXXXXX EG R+ PLS+MLR GQSV+A GSS+RRL +QVRAS+++RSRA ARAE W S SG VTPVP + APA G H ED N + Q ++E + E+A E A V VTGG++RGR LA RA RRRR +E+ER+AER ++VKRAE+ AE R+KR WRTQ GAAEL+R DR+RGA EA++LTLRAW+AGV + A +T D RE E+LRH+FRLFD SCDGCI AEELGRLLSR+ + +SE E+ LL +MD DGSGDVDF EFS WWH G S RP A +RSAA+SLVA VAP+ AARRDARRALIS AR+ ARAEVKN LRL+ +E L LAK +AT N T + +AG ++ TR SA P+ G LG G G G+G+G+ NA R+AAAR+SKLARAEAEAYADV+A + T AG+RELARRTR +RLEW AA++ A IAR G G+ T G A R++Q +A+ T LVE P L LW +H S G AG ++ VE P+ELKY+GASLR TLVG RR+ G + T+LGSTLA G R AN T A E ++ AA A + E GD ++LS IFDD + DEIR LKTLTRV + +++ASLH+ PSS+ A RTKAQ RADLA IA+L+L+MFFTPG FR LAK+ALLAEGRAFERHELAR +ALEDGEPWRLAE A TK G+E AG PADVDRLRA G AKL RALA GE ++RS +G+ +R SA+N+LARDELRRAF LCEADG+ GEISRAEAAHVL++AGIPQTT+A GRVR+P + K H GG + R W W+ + ++ P G ++ + F + GGG G G + + A++CPT D D V G E+ G + R DDLD D G E G SDDH SDG S+DMD+VDDVTNDEGFEL EMEILL A +ARQT AKAASLGRLLAR+ L TDTRDARM+LMSRAR AGRDKAMH+FENLLT+ D
Sbjct: 997 LYGDYWRHFGGGREEQHRRRGAERQWARLLDERSRLAAAGLRAEAAEEARIAPKGSAGAHEHAALGARLLAALSSDLKRGG--GKSGSSEEE---AVPTTEEATATVARLAFQAFDRDGNGELDVSDLADLLGVLRRIAGRPPSARTALGS--GAAAAGYGLEAAMFAMDEDHSGQVDIDEFM---RWFN-----------GYDAHDGANRSTAPGELPQRGRESEEPLYVKVLGVRNGATGGTNAQEDREANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTADEDDT---VGARASGDPKSAKNEKRPAA------GGVFRVRAWLKRK-----APATTN---GSQRKQTKRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPSVGGSNTGDGSFASPSSANRSVAETRARGAPFSPRRLLGDRWS---SSTADPWKRHAKTLRAVAEQEARTLLLRRARLRAQVHELARFRATRPPEYDEWSSPDFLEKHRETVAEITADADSIFVENLHRNLREAEEAVQHGLSKERSVPSPLP-------PPDP-----------GISAXXXXXXXXXXA-LHSDGSGNLATAIGV-------------------------DGGSVGALASSPSRLAW--SLGGRKWWGRRGGGRGTGTQVYAPGTWGERQPTADIAETVKAAERDAAAARRRAFQTPTGRAEIARAVRRLKASRVIAATSNTVAAAAEAGGEAPQTNTAQGTHEERQTVVTQVAAAGAVSEGATWGAPANAGLSEDAGAKHTASVAKLSTSLNVAGAVDRVEER---EKRSPLVGQAEQLFQLFDADGSGAIDREELAPLLGQLGIWVTAKMASXXXXXXXXXXXXXXXXXXXVTWLENEGADLRRAPLSKMLRAGQSVKAGGSSTRRLESQVRASIVARSRAAARAEVWAS-SG--VTPVP---AAAPAVVATTASTAAIDGPHEQAKQEDPNPQKQXXXXXXGEEEKKVIDEDAVAVEAATARKEPALAVK-VTGGKERGRVLATRATGRRRRFEEEERDAERELVVKRAEDVAERRIKRQWRTQAGAAELKRERDRIRGAEEALNLTLRAWDAGVSFAKEEAGVTKT-DASALRETKRAEEKLRHMFRLFDVSCDGCIHAEELGRLLSRMNVPMSEAEIVGLLHEMDRDGSGDVDFCEFSAWWHKDGLKRSNRPAALIRSAASSLVAKVAPITAARRDARRALISRARAEARAEVKNVLRLEDEDEEALRLAK------IATGN-TASAVAADAAGEYFVAFETRVGRECGGTSSAPPGKPLLKDGTEG--LGGEGSGVGEGGEGRGDRL-NAKRLAAARSSKLARAEAEAYADVQAMILTQAGKRELARRTRDLRLEWSAAIRTATSIAR----ESGSGELGTAGSADYSYEGASHDKEEQRTQRKEQRQHATSTDTSGIPLVEAPILRFLWGLHRSTAAGVTLETAGASAGVE--PSELKYVGASLRSTLVGGANRRIWGSQVTLLGSTLAKGTAGRTANIVRTSADFGLPPQAEEEATLPNAARTAGV-----ESGDALSLSTIFDDHAHDEIRDLKTLTRVDLADVLASLHR--------------------PSSSALANSAGSAAEGERRPRTKAQIRADLATIAKLKLKMFFTPGAFRKLAKQALLAEGRAFERHELARAIALEDGEPWRLAEAAETKRGIESAGGATPADVDRLRAMTMGAAKLGRALALGE--------------------------------------------AARS---SGLPLQRRIASAMNNLARDELRRAFALCEADGVPGEISRAEAAHVLSFAGIPQTTLAATGRVRVPLLEESK----------HSGGQPSQTPKSQRRRXXXRRWPWRGRRAKGPSRSQPPPGRQVTPPPRHPRNAVSRFLKIGGGAG-----PGGAKKQGNTGTGGTARVCPTNEDDGDDNAVVVGPIVVGPESPPSQAGEKEDRG-DDLDGEGGDACIGGEEDDGRESDDH-------------------------GSDGQFSVDMDMVDDVTNDEGFELGEMEILLAAVKARQTLAAKAASLGRLLARRALPISLTDTRDARMLLMSRARSAGRDKAMHQFENLLTVETGD 2916
BLAST of mRNA_S-firma_M_contig910.20046.1 vs. uniprot
Match: A0A6H5L3X6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3X6_9PHAE) HSP 1 Score: 136 bits (342), Expect = 7.600e-32 Identity = 95/186 (51.08%), Postives = 106/186 (56.99%), Query Frame = 2
Query: 5669 AKICPTTNDHADGG-------VPGLEAKGPTTGTLDGRKLDDLDNGDND----GVERPGPGSDDHLQQDEDEELSRSEEXXXXDSVESDQTSDGMLSLDMDVVDDVTNDEGFELAEMEILLEAARARQTRLAKAASLGRLLARKVLTTYFTDTRDARMVLMSRARGAGRDKAMHKFENLLTIGVHD 6193
A++CPT D D V G E+ G D + DDLD D G E G SDDH SDG S+DMD+VDDVTNDEGFEL EMEILL A +ARQT AKAASLGRLLAR+ L T FTDTRDA M+LMSRAR AGR+KAM KFENLLT+ D
Sbjct: 79 ARVCPTNEDDDDDNAIAVSPIVVGPESPPSQAGEKD--RGDDLDGEGGDACIGGEEDDGRESDDH-------------------------GSDGQFSVDMDIVDDVTNDEGFELGEMEILLAAVKARQTLAAKAASLGRLLARRALPTSFTDTRDAHMLLMSRARSAGREKAMRKFENLLTVETGD 237
BLAST of mRNA_S-firma_M_contig910.20046.1 vs. uniprot
Match: A0A6P7SWB5_OCTVU (neo-calmodulin isoform X1 n=3 Tax=Octopus TaxID=6643 RepID=A0A6P7SWB5_OCTVU) HSP 1 Score: 57.4 bits (137), Expect = 1.670e-5 Identity = 25/56 (44.64%), Postives = 38/56 (67.86%), Query Frame = 2
Query: 3293 RHLFRLFDTSCDGCIDAEELGRLLSRLKLTVSEPEVAALLQKMDCDGSGDVDFVEF 3460
+ +F LFD DG I +LG +L +L ++ +E EV +++K+DCDGSG +DF EF
Sbjct: 22 KDVFSLFDDDNDGIISTRQLGDVLRKLGMSPTEGEVNEMIEKVDCDGSGTIDFPEF 77
BLAST of mRNA_S-firma_M_contig910.20046.1 vs. uniprot
Match: A0A812C2N2_SEPPH (Calmodulin n=3 Tax=Coleoidea TaxID=6606 RepID=A0A812C2N2_SEPPH) HSP 1 Score: 57.4 bits (137), Expect = 1.820e-5 Identity = 25/56 (44.64%), Postives = 38/56 (67.86%), Query Frame = 2
Query: 3293 RHLFRLFDTSCDGCIDAEELGRLLSRLKLTVSEPEVAALLQKMDCDGSGDVDFVEF 3460
+ +F LFD DG I +LG +L +L ++ +E EV +++K+DCDGSG +DF EF
Sbjct: 27 KDVFSLFDDDNDGIISTRQLGDVLRKLGMSPTEGEVNEMIEKVDCDGSGTIDFPEF 82
BLAST of mRNA_S-firma_M_contig910.20046.1 vs. uniprot
Match: A0A7S2C4K5_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2C4K5_9EUKA) HSP 1 Score: 55.8 bits (133), Expect = 6.460e-5 Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 2
Query: 3290 LRHLFRLFDTSCDGCIDAEELGRLLSRLKLTVSEPEVAALLQKMDCDGSGDVDFVEFS 3463
LR F LFD++ DG I A EL R++ L E ++ A++Q++D DGSG +DF EFS
Sbjct: 89 LRSAFSLFDSNKDGTISARELRRIMMNLGEPAMEEDMDAVIQQVDIDGSGHIDFSEFS 146
BLAST of mRNA_S-firma_M_contig910.20046.1 vs. uniprot
Match: A0A836CJN6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJN6_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 7.050e-5 Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 2
Query: 3221 TSAAITSPH---DLRRRREEACVCERLRHLFRLFDTSCDGCIDAEELGRLLSRLKLTVSEPEVAALLQKMDCDGSGDVDFVEFSDWW 3472
T AA SP D+RRRR + R +F +FD IDA E+ L++ L + + + E+ AL+Q++D D SG++DF EF W+
Sbjct: 128 TRAAAGSPRSAWDVRRRR-------KAREIFEMFDADGSATIDAGEMRELMNELCIPLEDDELVALMQEIDTDQSGEIDFEEFYVWY 207
BLAST of mRNA_S-firma_M_contig910.20046.1 vs. uniprot
Match: UPI001C71537F (troponin C-like n=3 Tax=Penaeus TaxID=133894 RepID=UPI001C71537F) HSP 1 Score: 55.1 bits (131), Expect = 9.660e-5 Identity = 24/67 (35.82%), Postives = 42/67 (62.69%), Query Frame = 2
Query: 3266 EEACVCERLRHLFRLFDTSCDGCIDAEELGRLLSRLKLTVSEPEVAALLQKMDCDGSGDVDFVEFSD 3466
+E + + L+ FR +D C+G ID +L +L L +SE ++ A+++++D DGSG +DF EF +
Sbjct: 80 DEEALKKELKEAFRFYDKECNGYIDNSKLREILQELDPRLSEDDLDAIIEEVDSDGSGTLDFDEFME 146 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig910.20046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_M_contig910.20046.1 >prot_S-firma_M_contig910.20046.1 ID=prot_S-firma_M_contig910.20046.1|Name=mRNA_S-firma_M_contig910.20046.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=2074bp MPSSLAGADLTCGREREGDEEQQRRPQRGQRGRLFLDPSRAVGGEWHRRRback to top mRNA from alignment at S-firma_M_contig910:1604..16717+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_M_contig910.20046.1 ID=mRNA_S-firma_M_contig910.20046.1|Name=mRNA_S-firma_M_contig910.20046.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=15114bp|location=Sequence derived from alignment at S-firma_M_contig910:1604..16717+ (Sphaerotrichia firma Sfir_13m male)back to top Coding sequence (CDS) from alignment at S-firma_M_contig910:1604..16717+ >mRNA_S-firma_M_contig910.20046.1 ID=mRNA_S-firma_M_contig910.20046.1|Name=mRNA_S-firma_M_contig910.20046.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=12444bp|location=Sequence derived from alignment at S-firma_M_contig910:1604..16717+ (Sphaerotrichia firma Sfir_13m male)back to top |