mRNA_S-firma_M_contig9099.20041.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9099.20041.1
Unique NamemRNA_S-firma_M_contig9099.20041.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9099.20041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9099contigS-firma_M_contig9099:3617..4182 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size568
Cds size372
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828734.8432298-CDS-S-firma_M_contig9099:3616..39881622828734.8432298-CDS-S-firma_M_contig9099:3616..3988Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9099 3617..3988 +
1697105130.3365343-CDS-S-firma_M_contig9099:3616..39881697105130.3365343-CDS-S-firma_M_contig9099:3616..3988Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9099 3617..3988 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828734.855436-UTR-S-firma_M_contig9099:3988..41821622828734.855436-UTR-S-firma_M_contig9099:3988..4182Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9099 3989..4182 +
1697105130.344707-UTR-S-firma_M_contig9099:3988..41821697105130.344707-UTR-S-firma_M_contig9099:3988..4182Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9099 3989..4182 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9099.20041.1prot_S-firma_M_contig9099.20041.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9099 3617..3988 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9099.20041.1

>prot_S-firma_M_contig9099.20041.1 ID=prot_S-firma_M_contig9099.20041.1|Name=mRNA_S-firma_M_contig9099.20041.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=124bp
LVHTRFVLSLRRPSCALSDTFASVWFCCCVLFFSRVHTAEWPTLARVQPS
YHASPPLQLAAFTICISQRVFACALRTPTGRREEGLAIGDNSRAMFFELG
TLISNNRQLPVFVTPVRLDKDFH*
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mRNA from alignment at S-firma_M_contig9099:3617..4182+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9099.20041.1 ID=mRNA_S-firma_M_contig9099.20041.1|Name=mRNA_S-firma_M_contig9099.20041.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=566bp|location=Sequence derived from alignment at S-firma_M_contig9099:3617..4182+ (Sphaerotrichia firma Sfir_13m male)
CTCGTTCACACCCGGTTTGTCCTCTCTTTGCGGCGTCCTTCATGTGCCCT
TTCGGACACGTTTGCATCGGTTTGGTTCTGCTGCTGTGTCCTTTTTTTTT
CCCGAGTGCACACCGCCGAGTGGCCAACTTTGGCACGTGTTCAGCCCAGC
TACCACGCATCTCCTCCTCTACAGCTCGCGGCTTTCACTATCTGCATATC
ACAGAGGGTGTTCGCGTGTGCTTTGCGGACCCCGACAGGGCGTAGGGAGG
AGGGGCTCGCGATCGGCGACAACTCACGTGCAATGTTTTTCGAGCTTGGC
ACACTGATTTCGAACAACAGACAGCTACCGGTATTCGTGACTCCTGTGCG
GCTTGACAAGGACTTTCATTGACACCCAGCAGGCATTCCTACATCTCTGT
AGTGTGATTGATCAGTGTCGGGTGCAATTTGTGGAGGTCTAGCTTTGCTC
TACGTCGAGTACGCTGCTTAGTCGTTACCTCGCGCTACTCAGTCTCTGCC
GACTGCCGCCCGGCACCGAAAATAAGGGGACCCCACAGGTAGAAAAATGT
GGGGGTTGGACACACC
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Coding sequence (CDS) from alignment at S-firma_M_contig9099:3617..4182+

>mRNA_S-firma_M_contig9099.20041.1 ID=mRNA_S-firma_M_contig9099.20041.1|Name=mRNA_S-firma_M_contig9099.20041.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=744bp|location=Sequence derived from alignment at S-firma_M_contig9099:3617..4182+ (Sphaerotrichia firma Sfir_13m male)
CTCGTTCACACCCGGTTTGTCCTCTCTTTGCGGCGTCCTTCATGTGCCCT
TTCGGACACGTTTGCATCGGTTTGGTTCTGCTGCTGTGTCCTTTTTTTTT
CCCGAGTGCACACCGCCGAGTGGCCAACTTTGGCACGTGTTCAGCCCAGC
TACCACGCATCTCCTCCTCTACAGCTCGCGGCTTTCACTATCTGCATATC
ACAGAGGGTGTTCGCGTGTGCTTTGCGGACCCCGACAGGGCGTAGGGAGG
AGGGGCTCGCGATCGGCGACAACTCACGTGCAATGTTTTTCGAGCTTGGC
ACACTGATTTCGAACAACAGACAGCTACCGGTATTCGTGACTCCTGTGCG
GCTTGACAAGGACTTTCATTGACTCGTTCACACCCGGTTTGTCCTCTCTT
TGCGGCGTCCTTCATGTGCCCTTTCGGACACGTTTGCATCGGTTTGGTTC
TGCTGCTGTGTCCTTTTTTTTTCCCGAGTGCACACCGCCGAGTGGCCAAC
TTTGGCACGTGTTCAGCCCAGCTACCACGCATCTCCTCCTCTACAGCTCG
CGGCTTTCACTATCTGCATATCACAGAGGGTGTTCGCGTGTGCTTTGCGG
ACCCCGACAGGGCGTAGGGAGGAGGGGCTCGCGATCGGCGACAACTCACG
TGCAATGTTTTTCGAGCTTGGCACACTGATTTCGAACAACAGACAGCTAC
CGGTATTCGTGACTCCTGTGCGGCTTGACAAGGACTTTCATTGA
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