mRNA_S-firma_M_contig9093.20038.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9093.20038.1
Unique NamemRNA_S-firma_M_contig9093.20038.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9093.20038.1 vs. uniprot
Match: D7G2A3_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2A3_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 4.760e-50
Identity = 249/487 (51.13%), Postives = 287/487 (58.93%), Query Frame = 1 
Query:   13 GCRDRASILQGAGDSILKLVCSRVTPAQWADWLRAPLEHAARTGDHELVDKLLKAGASGSAGWRGPDGETLLHAGAEGGNEKVVSTLIKSGAGEDMEARAPATGNXXXXXXXXXXXXXXXXXXXXXXADVNALNDRKDAXXXXXXXXXXXXXXXXXXXXXXXPNKKSRGYHPIHRA-ARRGLDEVVGALVLKGVNLNHLDLLARTPLVIAVQEGRVSTVKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--SAVVPPVARAAEEDRPRLTRLSKLLANAP-NRAWRRRGFVVMCRAHPDRVRVRLVTGVPDAATEAMEXXXXXXXXXXXXXXXXXXXXXXGTSAHGGGEEGRGAGSSARAERVAGRDGSDGGGGFGGVAAWLMALTDDTLFRKVVGFL 1461
            G  +RASILQ  GD+I KLVC R TP QWA+WLRAPLEHAA TG+ +LVDKLL AGA+  AGWRG  G+TLLHA AEGGN  V+++L ++GAG DM+A++  TG+                      ADVN L+   D    XXXXXXXXXXXXXXXXXXXX               A  GLDEVV AL  KGV+LN L+    TPL +AV+   V+TVKV                                                              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    S V+  +A ++E  RP   R+SKLLA AP +RAWRRRGF+V+CRAHPDRV  RL   +P AA EA E       XXXXXXXXXXXXXXX               S ARA   A R+G+    GF G +AW+MALT++ LFRK+VGFL
Sbjct:    3 GYEERASILQDLGDTIFKLVCDRATPEQWAEWLRAPLEHAAGTGNRDLVDKLLGAGANVGAGWRGCHGKTLLHAAAEGGNVHVITSLRRAGAGRDMKAKSLDTGHTPLDLAVIGGKEAAAKALIMAGADVNTLDATNDGLLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWHGLDEVVLALGEKGVDLNCLNSKGETPLRLAVRGDHVTTVKVLLSEGADPHFRAANRPLKLLHVAAKRNRAAAIPALFEAGVNIEGRTSSGRTPLRYAAIYDSYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETVVSRVMQGMAESSEARRPFFERISKLLARAPQDRAWRRRGFLVLCRAHPDRV--RLAVKIPAAAAEATEGLQERPRXXXXXXXXXXXXXXXXXXXXXXXXXXX---SGARARIEAAREGTVC--GFDGFSAWMMALTEENLFRKIVGFL 482
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BLAST of mRNA_S-firma_M_contig9093.20038.1 vs. uniprot
Match: D7FQP2_ECTSI (Pc16g06120 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQP2_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 1.020e-40
Identity = 96/226 (42.48%), Postives = 115/226 (50.88%), Query Frame = 1 
Query:    4 PAAGCRDRASILQGAGDSILKLVCSRVTPAQWADWLRAPLEHAARTGDHELVDKLLKAGASGSAGWRGPDGETLLHAGAEGGNEKVVSTLIKSGAGEDMEARAPATGNXXXXXXXXXXXXXXXXXXXXXXADVNALNDRKDAXXXXXXXXXXXXXXXXXXXXXXXPNKKSRGYH---PIHRAARRGLDEVVGALVLKGVNLNHLDLLARTPLVIAVQEGRVSTVKV 672
            P     DR  IL  A D I KL+C R T  QW +WLRAPLEHAA T + +LV+KLLKAGA GSAGWRG D  TLLHA        VV+ LI++GAGEDMEA+ P TG                       ADVNA++   D                         N K+RG+    PIH AA  G  +VV AL     +L+ LD    TP+ +AV+   VSTVKV
Sbjct:    4 PREDAEDRVKILGDAADMIFKLMCDRATSEQWTEWLRAPLEHAAGTANRDLVEKLLKAGADGSAGWRGCDDNTLLHAAXXXXXXXVVTALIRAGAGEDMEAKTPGTGGTPLHVAVMRGQEAAARVLVLAGADVNAVDHNTDTPLHLAIGVLGVDARIAQDLLLSGANPKARGFAHDCPIHVAASHGRHDVVHALAHTRADLDALDGKGMTPISLAVEGDHVSTVKV 229
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BLAST of mRNA_S-firma_M_contig9093.20038.1 vs. uniprot
Match: D8LHQ7_ECTSI (F-box domain and ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ7_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 4.080e-38
Identity = 117/221 (52.94%), Postives = 142/221 (64.25%), Query Frame = 1 
Query:   13 GCRDRASILQGAGDSILKLVCSRVTPAQWADWLRAPLEHAARTGDHELVDKLLKAGASGSAGWRGPDGETLLHAGAEGGNEKVVSTLIKSGAGEDMEARAPATGNXXXXXXXXXXXXXXXXXXXXXXADVNALNDRKDAXXXXXXXXXXXXXXXXXXXXXXXPNKKSRGYHPIHRA-ARRGLDEVVGALVLKGVNLNHLDLLARTPLVIAVQEGRVSTVKV 672
            G  +R+SILQ  GD+  KLV  R TP QWA+WLRAPLEHAA TG+ +LVDKLL AGA+G AGWRG  G+TLLHA AEGGN +V++ L  +GAGEDM+A+A  TG+                      A+VN L+   D XXXXXXXXXXXXXXXXXXXXXXX               A  GLDEVV ALV KGV+LN ++     PL +A++   V+T+KV
Sbjct:   45 GYEERSSILQDLGDTTFKLVRDRATPDQWAEWLRAPLEHAAATGNRDLVDKLLGAGANGGAGWRGCHGKTLLHAAAEGGNVQVITRLRNAGAGEDMKAKALDTGHTPLDLAVIGGKEAAAKALIMAGANVNMLDATNDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACYGLDEVVLALVQKGVDLNCVNTRGEIPLCVALRGDHVATIKV 265
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BLAST of mRNA_S-firma_M_contig9093.20038.1 vs. uniprot
Match: D7FQP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQP1_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 1.900e-31
Identity = 65/102 (63.73%), Postives = 77/102 (75.49%), Query Frame = 1 
Query:    4 PAAGCRDRASILQGAGDSILKLVCSRVTPAQWADWLRAPLEHAARTGDHELVDKLLKAGASGSAGWRGPDGETLLHAGAEGGNEKVVSTLIKSGAGEDMEAR 309
            P     DRA  L  A   I KL+C R T  QWA+WLRAPLEHAA T + +LV+KLLKAGA GSAGWRG D +TLLHA AEGGNE+VV+ L+++GAGEDMEA+
Sbjct:    4 PREDAEDRAKTLGDAAGIIFKLMCDRATSEQWAEWLRAPLEHAAGTANQDLVEKLLKAGADGSAGWRGCDDKTLLHAAAEGGNEEVVTALVRAGAGEDMEAK 105
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BLAST of mRNA_S-firma_M_contig9093.20038.1 vs. uniprot
Match: D7FM65_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM65_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 6.840e-30
Identity = 62/102 (60.78%), Postives = 76/102 (74.51%), Query Frame = 1 
Query:   19 RDRASILQGAGDSILKLVCSRVTPAQWADWLRAPLEHAARTGDHELVDKLLKAGASGSAGWRGPDGETLLHAGAEGGNEKVVSTLIKSGAGEDMEARAPATG 324
            +DR S L G GD IL LVC   TP QW  WLR PLEHAA TG+  LV+KLLK GA+ SAGWRG DG TL+HAGAEGG+E+V+S L ++GAG+ +  +AP +G
Sbjct:    5 QDRKSTLHGTGDMILDLVCDLATPRQWTKWLRVPLEHAAGTGNAALVEKLLKVGANASAGWRGCDGRTLMHAGAEGGSEQVISMLTRAGAGKYINDQAPLSG 106
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BLAST of mRNA_S-firma_M_contig9093.20038.1 vs. uniprot
Match: D7FPN3_ECTSI (Similar to ankyrin 2,3/unc44, partial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPN3_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 1.540e-29
Identity = 60/97 (61.86%), Postives = 75/97 (77.32%), Query Frame = 1 
Query:   22 DRASILQGAGDSILKLVCSRVTPAQWADWLRAPLEHAARTGDHELVDKLLKAGASGSAGWRGPDGETLLHAGAEGGNEKVVSTLIKSGAGEDMEARA 312
            DRA+IL+G+ D+  +LVC R TP QWA+WLRAPLEHAA T DH+LV KLL AGA+GS GW G DG+TLLHA AEGGN +V+  L+++GA  D +  A
Sbjct:    9 DRANILRGSEDTTFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQVIMALLRAGAAGDKDTAA 105
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BLAST of mRNA_S-firma_M_contig9093.20038.1 vs. uniprot
Match: A0A6H5JXY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY4_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 3.700e-27
Identity = 64/97 (65.98%), Postives = 76/97 (78.35%), Query Frame = 1 
Query:   22 DRASILQGAGDSILKLVCSRVTPAQWADWLRAPLEHAARTGDHELVDKLLKAGASGSAGWRGPDGETLLHAGAEGGNEK-VVSTLIKSGAGEDMEAR 309
            DRA IL  A D I +L+C R T  QWA+WLRAPLEHAA T + +LV+KLLKAGA+GSAG RG D  TLLHA AEGGNE+ VV+ LIK+GA ED+EA+
Sbjct:   12 DRAKILGDAADMIFELMCDRATSEQWAEWLRAPLEHAAGTANQDLVEKLLKAGANGSAGRRGCDDNTLLHAAAEGGNEEEVVTALIKAGAEEDIEAK 108
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BLAST of mRNA_S-firma_M_contig9093.20038.1 vs. uniprot
Match: A0A6H5JYJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYJ2_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 7.700e-23
Identity = 163/460 (35.43%), Postives = 199/460 (43.26%), Query Frame = 1 
Query:   85 TPAQWADWLRAPLEHAARTGDHELVDKLLKAGASGSAGWRGPDGETLLHAGAEGGNEKVVSTLIKSGAGEDMEARAPATGNXXXXXXXXXXXXXXXXXXXXXXADVNALNDRKDAXXXXXXXXXXXXXXXXXXXXXXXPNKKSRGYHPIHRAARRGLDEVVGALVLKGVNLNHLDLLARTPLVIAVQEGRVSTVKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAVVPPVARAAEEDRPRLTRLSKLLANAP-NRAWRRRGFVVMCRAHPDRVRVRLVTGVPDAATEAMEXXXXXXXXXXXXXXXXXXXXXXGTSAHGGGEEGRGAGSSARAERVAGRDGSDGGGGFGGVAAWLMALTDDTLFRKVVGFL 1461
            TP QWA+WLRAPLEHAA TG+ +LVDKLL AG                              L ++GAG DM+A+   TG+                      AD+N L+ + D                         +  S G  PIH  A  G DEV   LV K V+LN +++  RTPL +AV+E  VSTVKV                XXXXXXXXXXXXXXXXXX                                                                                   S V+  +A       PRL  +S+LL  AP +RAWRRRGFVV+ RA P+RV  RL   +P  A EA E    XXXXXXXXXXXXXXXXXXGT   GGG  G    + A  E V  R+G+ G  GF GV+AW+ AL ++ +FR++VGFL
Sbjct:   13 TPEQWAEWLRAPLEHAAGTGNRDLVDKLLGAG------------------------------LRRAGAGGDMKAKTLDTGHTPLDLAVVGGNEAAAEALIMAGADMNVLDVKNDGLLHLTITGG---------------HAGSNGNFPIHLPACYGFDEVALVLVQKRVDLNCVNIERRTPLYVAVRENHVSTVKVLLAEGADPNSLNLLLMXXXXXXXXXXXXXXXXXXDIERRTSRESTPLHATAAFGSCAAMLTLLQLGANVNSKENRGKPRPKGKAAI-------------------------------SVVIRCMAETRAASLPRLEHVSELLVPAPQDRAWRRRGFVVLRRALPNRV--RLAVEIPARAAEATEQPQQXXXXXXXXXXXXXXXXXXGTH-RGGGRAGEXXXARAGIEVV--REGTVG--GFDGVSAWMTALAEEEVFRRIVGFL 389
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BLAST of mRNA_S-firma_M_contig9093.20038.1 vs. uniprot
Match: A0A6H5JU78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU78_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.430e-22
Identity = 136/489 (27.81%), Postives = 174/489 (35.58%), Query Frame = 1 
Query:   13 GCRDRASILQGAGDSILKLVCSRVTPAQWADWLRAPLEHAARTGDHELVDKLLKAGASGSAGWRGPDGETLLHAGAEGGNEKVVSTLIKSGAGEDMEARAPATGNXXXXXXXXXXXXXXXXXXXXXXADVNALNDRKDAXXXXXXXXXXXXXXXXXXXXXXXPNKKSRGYHPIHRAARRGLDEVVGALVLKGVNLNHLDLLARTPLVIAVQ-----EGRVSTVKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAVVPPVARAAEEDRPRLTRLSKLLANAP-NRAWRRRGFVVMCRAHPDRVRVRLVTGVPDAATEAMEXXXXXXXXXXXXXXXXXXXXXXGTSAHGGGEEGRGAGSSARAERVAGRDGSDGGGGFGGVAAWLMALTDDTLFRKVVGFL 1461
            G ++R+SILQ  GD+I KLVC   TP QWA+WLRAPLEHAA TG        +KA A  +  W  P   T+      GG E     LI +GA   M     A                                  KD                            S G  PIH AA  GLDEVV A+V KG++LN L+     PL++A+      E + + ++V                                                                                                                       V+  +A A    RP L RLS+LLA AP +RAWRRRGF+V+ R HPDRV  RL   +P AA +A E                      GT+  GG     GA S  RA   A  +G+    GFGGV+AW+MALT++ +FR++VGFL
Sbjct:    3 GYKERSSILQDLGDTIFKLVCDWATPEQWAEWLRAPLEHAAATG----AGGDIKAKAPHT--WHTPLDLTVT-----GGKEAAAKALIMAGADGHMWEHRVA----------------------------------KDLLLSGANPIQAG----------------SNGNFPIHLAACHGLDEVVLAVVEKGIDLNCLNNKREIPLLLALLRIAACENKAAAIRVLFEAGADIEARLTLFQLGAKVNSKENERITSLSSACSFGNHDAAGLLLSWGGDENAMDSEGETVVFM----------------------------------------------------VMQQIAEAPASVRPPLERLSRLLARAPQDRAWRRRGFLVLGRVHPDRV--RLAVEIPPAAADATEQPQQRPRRRASTGQVEVD----GTNGGGGXT---GASSGVRAGIEAVHEGTVA--GFGGVSAWMMALTEEGVFRRIVGFL 367
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BLAST of mRNA_S-firma_M_contig9093.20038.1 vs. uniprot
Match: A0A6H5KB54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB54_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 3.060e-22
Identity = 203/448 (45.31%), Postives = 237/448 (52.90%), Query Frame = 1 
Query:  139 TGDHELVDKLLKAGASGSAGWRGPDGETLLHAGAEGGNEKVVSTLIKSGAGEDMEARAPATGNXXXXXXXXXXXXXXXXXXXXXXADVNALNDRKDAXXXXXXXXXXXXXXXXXXXXXXXPNKKSRGYHPIHRAARRGL-DEVVGALVLKGVNLNHLDLLARTPLVIAVQEGRVSTVKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSA---VVPPVARAAEEDRPRLTRLSKLLANAP-NRAWRRRGFVVMCRAHPDRVRVRLVTGVPDAATEAM--EXXXXXXXXXXXXXXXXXXXXXXGTSAHGGGEEGRGAGSSARAERVAGRDGSDGGGGFGGVAAWLMALTDDTLFRKVVGFL 1461
            T ++ELV KLL+AGA G  GWRG   +TLLHA A+GG+  VVS L ++GA  D EA AP TG+                      ADVN L+     XXXXXXXXXXXXXXXXXXXXXXX                    D++V AL  KGV+L  +   A  PL+ AV++  +STV+V                                                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         S     +P +A AA+ED  RL RLSKLL  AP +RAWRRRGF+ +CRAHPDR+  RLV  +P  A EA   +                         AHG    G G+ S A   RV   DG   GGGF   A WL+AL ++ +FRK+VGFL
Sbjct:   21 TANNELVSKLLRAGADGGVGWRGCHDKTLLHAAAKGGDALVVSLLQRAGARADFEAEAPGTGHTPLHLAVLGGNAATAKALTMAEADVNVLDAMNGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDIVVALAHKGVDLEGV---AEPPLLRAVRQDHISTVRVLLAVGANANNPFSDYDYGTTVLHFAAETDNAVAIPVLIEAGASVQSSDMYDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKETAVDLQGSTPSEFIPAIAEAADEDHRRLERLSKLLTRAPQDRAWRRRGFLALCRAHPDRL--RLVVEIPKTADEASGKQPQEQERPSRRARKGQQSKVDVEVDDAHGS-VSGEGS-SRAGIVRV---DGKGDGGGFEFAAGWLVALAEEDVFRKIVGFL 458
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9093.20038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2A3_ECTSI4.760e-5051.13Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D7FQP2_ECTSI1.020e-4042.48Pc16g06120 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D8LHQ7_ECTSI4.080e-3852.94F-box domain and ankyrin repeat protein n=1 Tax=Ec... [more]
D7FQP1_ECTSI1.900e-3163.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FM65_ECTSI6.840e-3060.78Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ecto... [more]
D7FPN3_ECTSI1.540e-2961.86Similar to ankyrin 2,3/unc44, partial n=2 Tax=Ecto... [more]
A0A6H5JXY4_9PHAE3.700e-2765.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYJ2_9PHAE7.700e-2335.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU78_9PHAE1.430e-2227.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB54_9PHAE3.060e-2245.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9093contigS-firma_M_contig9093:2236..3699 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score190.7
Seed ortholog evalue1.7e-45
Seed eggNOG ortholog2880.D7G2A3
KEGG koko:K21440
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size1464
Cds size1464
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828734.674173-CDS-S-firma_M_contig9093:2235..36991622828734.674173-CDS-S-firma_M_contig9093:2235..3699Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9093 2236..3699 +
1697105130.2441072-CDS-S-firma_M_contig9093:2235..36991697105130.2441072-CDS-S-firma_M_contig9093:2235..3699Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9093 2236..3699 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9093.20038.1prot_S-firma_M_contig9093.20038.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9093 2236..3699 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9093.20038.1

>prot_S-firma_M_contig9093.20038.1 ID=prot_S-firma_M_contig9093.20038.1|Name=mRNA_S-firma_M_contig9093.20038.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=488bp
MPAAGCRDRASILQGAGDSILKLVCSRVTPAQWADWLRAPLEHAARTGDH
ELVDKLLKAGASGSAGWRGPDGETLLHAGAEGGNEKVVSTLIKSGAGEDM
EARAPATGNTPLHLAVVGGKEAAAGALIMAGADVNALNDRKDAPLHLAID
GGHARLAKDLLFSGADPNKKSRGYHPIHRAARRGLDEVVGALVLKGVNLN
HLDLLARTPLVIAVQEGRVSTVKVLLAAGADASFRNGVPKPVLHVAAQLN
RAAAIPELVEAGGDIEARSTSGHTPLVYSAMLGSCAAMLSLLQLGANVHT
KTANGYTPLHIACEEGQADAADLLLKWGADDTAVTNNGKTPSAVVPPVAR
AAEEDRPRLTRLSKLLANAPNRAWRRRGFVVMCRAHPDRVRVRLVTGVPD
AATEAMEERPQQRPSRRPRRGQVKVEVKVGTSAHGGGEEGRGAGSSARAE
RVAGRDGSDGGGGFGGVAAWLMALTDDTLFRKVVGFL*
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mRNA from alignment at S-firma_M_contig9093:2236..3699+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9093.20038.1 ID=mRNA_S-firma_M_contig9093.20038.1|Name=mRNA_S-firma_M_contig9093.20038.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1464bp|location=Sequence derived from alignment at S-firma_M_contig9093:2236..3699+ (Sphaerotrichia firma Sfir_13m male)
ATGCCGGCGGCGGGATGCAGAGACCGGGCGAGCATCCTGCAGGGTGCAGG
CGATTCGATACTGAAACTCGTGTGTAGTCGGGTGACGCCGGCGCAGTGGG
CGGATTGGCTGAGGGCACCGCTGGAACACGCAGCACGCACGGGTGATCAT
GAGCTGGTGGACAAGCTCCTGAAAGCTGGGGCAAGCGGGAGTGCGGGCTG
GCGGGGCCCCGACGGCGAGACTCTGCTGCATGCTGGAGCTGAGGGCGGCA
ACGAGAAGGTTGTGTCAACTTTGATCAAGTCCGGAGCCGGAGAAGACATG
GAGGCCAGAGCGCCCGCCACCGGCAATACTCCGCTGCACCTTGCGGTTGT
TGGCGGGAAGGAGGCTGCCGCAGGAGCGCTGATCATGGCCGGGGCGGATG
TGAACGCCCTCAACGACAGGAAGGACGCCCCCTTGCACTTGGCCATCGAC
GGAGGTCATGCACGACTCGCGAAGGATCTGCTGTTCAGCGGAGCGGATCC
CAACAAGAAGTCGCGGGGCTACCACCCCATTCATCGCGCTGCCCGCCGTG
GCCTGGACGAGGTAGTGGGCGCGTTGGTGCTCAAGGGGGTAAACCTGAAC
CACCTGGATTTGTTGGCGAGAACTCCCCTCGTCATTGCCGTGCAAGAAGG
GCGCGTTTCCACCGTGAAGGTCCTGCTTGCTGCAGGCGCAGATGCGAGCT
TTCGGAACGGCGTTCCAAAGCCCGTCCTGCACGTTGCTGCGCAGTTGAAC
AGAGCCGCCGCCATCCCAGAGCTCGTCGAGGCCGGGGGCGACATCGAAGC
GAGGAGCACATCAGGGCACACCCCGCTTGTTTATTCTGCCATGCTGGGCT
CGTGCGCGGCCATGCTCTCGCTCTTGCAACTGGGAGCGAACGTCCACACC
AAAACTGCCAACGGGTACACACCCCTGCACATCGCGTGCGAGGAGGGCCA
GGCCGATGCCGCAGACCTGCTGCTGAAATGGGGCGCGGATGACACGGCGG
TTACCAACAACGGCAAGACTCCGAGCGCGGTAGTTCCACCCGTCGCCAGG
GCTGCCGAAGAAGACCGCCCAAGGCTTACACGGCTGTCCAAGCTTCTGGC
AAACGCCCCGAACAGGGCCTGGCGTCGCCGGGGCTTCGTGGTCATGTGCC
GCGCACACCCTGACAGGGTCAGGGTGCGCCTGGTTACGGGGGTCCCCGAT
GCGGCAACTGAGGCAATGGAGGAGCGGCCCCAGCAGCGTCCGAGTCGCCG
TCCTAGGAGGGGACAGGTGAAGGTCGAGGTGAAAGTGGGTACAAGCGCAC
ACGGCGGGGGAGAAGAAGGACGCGGGGCGGGAAGTAGCGCGCGCGCAGAG
AGGGTGGCTGGGCGCGACGGCAGCGATGGCGGTGGTGGGTTCGGTGGTGT
GGCGGCCTGGCTCATGGCGTTGACCGACGACACCTTGTTCCGGAAGGTCG
TGGGATTCCTGTAG
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Coding sequence (CDS) from alignment at S-firma_M_contig9093:2236..3699+

>mRNA_S-firma_M_contig9093.20038.1 ID=mRNA_S-firma_M_contig9093.20038.1|Name=mRNA_S-firma_M_contig9093.20038.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=2928bp|location=Sequence derived from alignment at S-firma_M_contig9093:2236..3699+ (Sphaerotrichia firma Sfir_13m male)
ATGCCGGCGGCGGGATGCAGAGACCGGGCGAGCATCCTGCAGGGTGCAGG
CGATTCGATACTGAAACTCGTGTGTAGTCGGGTGACGCCGGCGCAGTGGG
CGGATTGGCTGAGGGCACCGCTGGAACACGCAGCACGCACGGGTGATCAT
GAGCTGGTGGACAAGCTCCTGAAAGCTGGGGCAAGCGGGAGTGCGGGCTG
GCGGGGCCCCGACGGCGAGACTCTGCTGCATGCTGGAGCTGAGGGCGGCA
ACGAGAAGGTTGTGTCAACTTTGATCAAGTCCGGAGCCGGAGAAGACATG
GAGGCCAGAGCGCCCGCCACCGGCAATACTCCGCTGCACCTTGCGGTTGT
TGGCGGGAAGGAGGCTGCCGCAGGAGCGCTGATCATGGCCGGGGCGGATG
TGAACGCCCTCAACGACAGGAAGGACGCCCCCTTGCACTTGGCCATCGAC
GGAGGTCATGCACGACTCGCGAAGGATCTGCTGTTCAGCGGAGCGGATCC
CAACAAGAAGTCGCGGGGCTACCACCCCATTCATCGCGCTGCCCGCCGTG
GCCTGGACGAGGTAGTGGGCGCGTTGGTGCTCAAGGGGGTAAACCTGAAC
CACCTGGATTTGTTGGCGAGAACTCCCCTCGTCATTGCCGTGCAAGAAGG
GCGCGTTTCCACCGTGAAGGTCCTGCTTGCTGCAGGCGCAGATGCGAGCT
TTCGGAACGGCGTTCCAAAGCCCGTCCTGCACGTTGCTGCGCAGTTGAAC
AGAGCCGCCGCCATCCCAGAGCTCGTCGAGGCCGGGGGCGACATCGAAGC
GAGGAGCACATCAGGGCACACCCCGCTTGTTTATTCTGCCATGCTGGGCT
CGTGCGCGGCCATGCTCTCGCTCTTGCAACTGGGAGCGAACGTCCACACC
AAAACTGCCAACGGGTACACACCCCTGCACATCGCGTGCGAGGAGGGCCA
GGCCGATGCCGCAGACCTGCTGCTGAAATGGGGCGCGGATGACACGGCGG
TTACCAACAACGGCAAGACTCCGAGCGCGGTAGTTCCACCCGTCGCCAGG
GCTGCCGAAGAAGACCGCCCAAGGCTTACACGGCTGTCCAAGCTTCTGGC
AAACGCCCCGAACAGGGCCTGGCGTCGCCGGGGCTTCGTGGTCATGTGCC
GCGCACACCCTGACAGGGTCAGGGTGCGCCTGGTTACGGGGGTCCCCGAT
GCGGCAACTGAGGCAATGGAGGAGCGGCCCCAGCAGCGTCCGAGTCGCCG
TCCTAGGAGGGGACAGGTGAAGGTCGAGGTGAAAGTGGGTACAAGCGCAC
ACGGCGGGGGAGAAGAAGGACGCGGGGCGGGAAGTAGCGCGCGCGCAGAG
AGGGTGGCTGGGCGCGACGGCAGCGATGGCGGTGGTGGGTTCGGTGGTGT
GGCGGCCTGGCTCATGGCGTTGACCGACGACACCTTGTTCCGGAAGGTCG
TGGGATTCCTGTAGATGCCGGCGGCGGGATGCAGAGACCGGGCGAGCATC
CTGCAGGGTGCAGGCGATTCGATACTGAAACTCGTGTGTAGTCGGGTGAC
GCCGGCGCAGTGGGCGGATTGGCTGAGGGCACCGCTGGAACACGCAGCAC
GCACGGGTGATCATGAGCTGGTGGACAAGCTCCTGAAAGCTGGGGCAAGC
GGGAGTGCGGGCTGGCGGGGCCCCGACGGCGAGACTCTGCTGCATGCTGG
AGCTGAGGGCGGCAACGAGAAGGTTGTGTCAACTTTGATCAAGTCCGGAG
CCGGAGAAGACATGGAGGCCAGAGCGCCCGCCACCGGCAATACTCCGCTG
CACCTTGCGGTTGTTGGCGGGAAGGAGGCTGCCGCAGGAGCGCTGATCAT
GGCCGGGGCGGATGTGAACGCCCTCAACGACAGGAAGGACGCCCCCTTGC
ACTTGGCCATCGACGGAGGTCATGCACGACTCGCGAAGGATCTGCTGTTC
AGCGGAGCGGATCCCAACAAGAAGTCGCGGGGCTACCACCCCATTCATCG
CGCTGCCCGCCGTGGCCTGGACGAGGTAGTGGGCGCGTTGGTGCTCAAGG
GGGTAAACCTGAACCACCTGGATTTGTTGGCGAGAACTCCCCTCGTCATT
GCCGTGCAAGAAGGGCGCGTTTCCACCGTGAAGGTCCTGCTTGCTGCAGG
CGCAGATGCGAGCTTTCGGAACGGCGTTCCAAAGCCCGTCCTGCACGTTG
CTGCGCAGTTGAACAGAGCCGCCGCCATCCCAGAGCTCGTCGAGGCCGGG
GGCGACATCGAAGCGAGGAGCACATCAGGGCACACCCCGCTTGTTTATTC
TGCCATGCTGGGCTCGTGCGCGGCCATGCTCTCGCTCTTGCAACTGGGAG
CGAACGTCCACACCAAAACTGCCAACGGGTACACACCCCTGCACATCGCG
TGCGAGGAGGGCCAGGCCGATGCCGCAGACCTGCTGCTGAAATGGGGCGC
GGATGACACGGCGGTTACCAACAACGGCAAGACTCCGAGCGCGGTAGTTC
CACCCGTCGCCAGGGCTGCCGAAGAAGACCGCCCAAGGCTTACACGGCTG
TCCAAGCTTCTGGCAAACGCCCCGAACAGGGCCTGGCGTCGCCGGGGCTT
CGTGGTCATGTGCCGCGCACACCCTGACAGGGTCAGGGTGCGCCTGGTTA
CGGGGGTCCCCGATGCGGCAACTGAGGCAATGGAGGAGCGGCCCCAGCAG
CGTCCGAGTCGCCGTCCTAGGAGGGGACAGGTGAAGGTCGAGGTGAAAGT
GGGTACAAGCGCACACGGCGGGGGAGAAGAAGGACGCGGGGCGGGAAGTA
GCGCGCGCGCAGAGAGGGTGGCTGGGCGCGACGGCAGCGATGGCGGTGGT
GGGTTCGGTGGTGTGGCGGCCTGGCTCATGGCGTTGACCGACGACACCTT
GTTCCGGAAGGTCGTGGGATTCCTGTAG
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