mRNA_S-firma_M_contig9042.19979.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9042.19979.1
Unique NamemRNA_S-firma_M_contig9042.19979.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
BLAST of mRNA_S-firma_M_contig9042.19979.1 vs. uniprot
Match: D8LCA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCA3_ECTSI)

HSP 1 Score: 662 bits (1707), Expect = 1.500e-230
Identity = 417/625 (66.72%), Postives = 459/625 (73.44%), Query Frame = 1
Query:    1 DYMLAYSLRKHAGVRSYVLPMDLYDSETWGNVDVEWNMQHQGGGATTLRTTVPMRDRIWHRLLKRGGDYFMSLRYAARPRPIVLVVDGAFDARALRALFLELQASYPPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVVLTGRGGTATSCSLAASTLGNRPGGEGEGAGRGPALCDPDSFASAWNLVAARHFPRLGTGRGGGSGGRDPVLMADLAAGLAGAVGTLKPLAVVSVAGTGPAAGAADGVGGGGAAIDEALAVVAGQAGVPLIRLPRKKDASAAALWLARLTPKAFRAWHRPRVDIVVVYEPS----GXXXXXXXXAGHTEAQLGALLGGLSEAHYLGDSVGLTVVIGSGPVPGAVGDEELYWPRGRKVVRGGSLSPSSPRNGXXXXXXXXXXXXXXXXXXXXXPSSLAALALRSWVPR---DDDSLVLVLEADQLVSPLFYSWLKAAVLETGYGGAAAPRPSASAPRPPS---GAQGSVCLPGVEASGXXXXXXXXXXAWLLPAGEWRAAQARCLGNAPPLAAXXXXXXXXXXACGGVGFGVPPTG---PS---LCPSLKRPDEALVGRTDADGALLGRGGGAPGLLEDGDALAKFVGRVLF 1827
            DYMLAYSLRKHAGVRS+VLPMDL DSETWGNVDV+WNMQHQGG ATTLR+TVPMRDRIWHRL KRGG+YFMSLRYA+RPRP++LVVDGAFDA+ALRALFL LQ SYPPTXXXXXXXXXXXXXXXXXXXXXX                     RVVLTGRGG + SCSLAA  LGN    +G  +  G  LCDPD+FASAWNLVA RHFPR GT RGGGSGGRD VLM DLA GLAGAV T+KPLA+VSVAGTGP+AG   GVGGGGAAIDEA+AVVAGQAGVP++RLPR+  ASAAALWL+RLTPKAFRAWHRPRVDIVVVYEPS    GXXXXXXXX  HTEAQL ALL  +SEAHYLGDSVG+T+ + SGPVP +VGDE   WPRGRK VRGGSL PS P +                       +S A LALRSW+PR   +DDS V+VLEAD++VSPLFYSWLK AVLET YGGAAAP+PSAS  RP +   G++G VC+PG +A G           WL+PAG WRAAQARCL N                  GG G G   TG   PS   LCP +  P EALVGRT ADGALL   G   GL+E+GDALA FV RVLF
Sbjct:   69 DYMLAYSLRKHAGVRSFVLPMDLGDSETWGNVDVDWNMQHQGGEATTLRSTVPMRDRIWHRLFKRGGEYFMSLRYASRPRPLLLVVDGAFDAQALRALFLVLQDSYPPTXXXXXXXXXXXXXXXXXXXXXXGVGVPQRPP------------RVVLTGRGGGSASCSLAARDLGNTK--DGRVSRGGATLCDPDTFASAWNLVAGRHFPRQGTSRGGGSGGRDHVLMVDLALGLAGAVSTVKPLAIVSVAGTGPSAGTPGGVGGGGAAIDEAVAVVAGQAGVPVVRLPRRASASAAALWLSRLTPKAFRAWHRPRVDIVVVYEPSPTNGGXXXXXXXXXXHTEAQLEALLNSISEAHYLGDSVGVTIAVASGPVPDSVGDESFPWPRGRKTVRGGSLFPSKPAD------------------LVGGSASPATLALRSWMPRGDDEDDSFVVVLEADRVVSPLFYSWLKVAVLETSYGGAAAPKPSASDRRPAAAAAGSRGGVCVPG-DAGGEAGGG-----TWLMPAGHWRAAQARCLRN----------KDGFEGGGGGPGTGCESTGYPQPSERVLCPIVTEPGEALVGRTGADGALLD--GWPRGLMENGDALASFVERVLF 643          
BLAST of mRNA_S-firma_M_contig9042.19979.1 vs. uniprot
Match: A0A6H5KK73_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK73_9PHAE)

HSP 1 Score: 637 bits (1642), Expect = 1.020e-217
Identity = 414/633 (65.40%), Postives = 456/633 (72.04%), Query Frame = 1
Query:    1 DYMLAYSLRKHAGVRSYVLPMDLYDSETWGNVDVEWNMQHQGGGATTLRTTVPMRDRIWHRLLKRGGDYFMSLRYAARPRPIVLVVDGAFDARALRALFLELQASYPPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVVLTGRGGTATSCSLAASTLGNRPGGEGEGAGRGPALCDPDSFASAWNLVAARHFPRLGTGRGGGSGGRDPVLMADLAAGLAGAVGTLKPLAVVSVAGTGPAAGAADGVGGGGAAIDEALAVVAGQAGVPLIRLPRKKDASAAALWLARLTPKAFRAWHRPRVDIVVVYEPSGXXXXXXXXAG--------HTEAQLGALLGGLSEAHYLGDSVGLTVVIGSGPVPGAVGDEELYWPRGRKVVRGGSLSPSSPRNGXXXXXXXXXXXXXXXXXXXXXPSSLAALALRSWVPRDD---DSLVLVLEADQLVSPLFYSWLKAAVLETGYGGAAAPRPSASAPRPPS--GAQGSVCLPGVEASGXXXXXXXXXXAWLLPAGEWRAAQARCLGNAPPLAAXXXXXXXXXXACGGVGFGVPPTG--------PS---LCPSLKRPDEALVGRTDADGALLGRGGGAPGLLEDGDALAKFVGRVLF 1827
            DYMLAYSLRKHAGVRS+VLPMDL DSETWGNVDV W MQHQGG ATTLR+TVPMRDRIWHRL KRGG+YFMSLRYA+RPRP++LVVDGAFDA+ALRALFL LQ SYPPTXXXXXXXXXXXXXXXXXXXXXXXXXXXX               RVVLTGRGG + SCSLAA  LGN    +G  +G G  LCDPD+FASAWNLVA RHFPR GT R GGSGGRD VLM DLA GLAGAV T+KPLA+VSVAGTGP+AG   GVGGGGAAIDEA+AVVAGQAGVP++RLPR+  ASAAALWL+RLTPKAFRAWHRP+VDIVVVYE   XXXXXXXX          HTEAQL ALL  +SEAHYLGDSVG+T+ + SGPVP +VGDE   WPRGRK VRGGSL PS P +                       +S A LALRSW+PR D   DS V+VLEAD++VSPLFYSWLK AVLET YGGAAAP+ S S  +P +  G++G VC+PG +A G           WL+PAG WRAAQARCL N                   G G G P TG        PS   LCP +  P EALVGRT ADGALL   G    L+E+GDALA FV RVLF
Sbjct:  265 DYMLAYSLRKHAGVRSFVLPMDLGDSETWGNVDVNWKMQHQGGEATTLRSTVPMRDRIWHRLFKRGGEYFMSLRYASRPRPLLLVVDGAFDAQALRALFLVLQDSYPPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGVGVPQRPP----RVVLTGRGGGSASCSLAARDLGNSK--DGRASGGGATLCDPDTFASAWNLVAGRHFPRQGTSRSGGSGGRDHVLMVDLALGLAGAVSTVKPLAIVSVAGTGPSAGTPGGVGGGGAAIDEAVAVVAGQAGVPVVRLPRRASASAAALWLSRLTPKAFRAWHRPQVDIVVVYEXXXXXXXXXXXXXXXXXXXXXHTEAQLEALLNSISEAHYLGDSVGMTIAVASGPVPDSVGDESFPWPRGRKTVRGGSLFPSKPAD------------------LVGGSASPATLALRSWMPRGDKEEDSFVVVLEADRVVSPLFYSWLKVAVLETSYGGAAAPKRSVSDRQPAAAAGSRGGVCVPG-DARGKAGGG-----TWLMPAGHWRAAQARCLRNKDGFE--------------GGGGGRPGTGCESTIYPQPSERVLCPIVTEPGEALVGRTGADGALLD--GWPKDLMENGDALASFVERVLF 851          
BLAST of mRNA_S-firma_M_contig9042.19979.1 vs. uniprot
Match: A0A7S2Y3B8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y3B8_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 4.270e-14
Identity = 47/112 (41.96%), Postives = 65/112 (58.04%), Query Frame = 1
Query:    1 DYMLAYSLRKHAGVRSYVLPMDLYDSETWGNVDVEWNMQHQGGGATTLRTTVPMRDRIWHRLLKRGGDY-FMSLRYAARP-------RPIVLVVDGAFDARALRALFLELQA 312
            DY LAYSLR++A   SY++PMDL D  TWGNVD+        G ATT  T + +R+ +WH L+ RGG Y F+  R   R          +++V+DGA  A+A+  L + L A
Sbjct:  301 DYFLAYSLRRYANAPSYIMPMDLEDPATWGNVDIVNGFA--SGNATTTGTMIDVRNDLWHGLVARGGKYQFLLQRQKLREGDQGDGRTSVLVVIDGAGQAKAMDKLMMALNA 410          
BLAST of mRNA_S-firma_M_contig9042.19979.1 vs. uniprot
Match: A0A7S3XR94_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XR94_HETAK)

HSP 1 Score: 85.9 bits (211), Expect = 5.400e-14
Identity = 46/84 (54.76%), Postives = 55/84 (65.48%), Query Frame = 1
Query:    1 DYMLAYSLRKHAGVRSYVLPMDLYDSETWGNVDVEWNMQHQGGGATTLRTTVPMRDRIWHRLLKRGGDYFMSLRYAARPRPIVL 252
            DY LAYS+RK A + SYVLPMDL DS TWGNVD++  +Q     ATT    V +R  +W RL +RGGDYF   R   RPRP V+
Sbjct:  220 DYHLAYSMRKFADLPSYVLPMDLTDSRTWGNVDLQQTLQ--AVAATTTMDMVHVRMALWRRLAQRGGDYFWLRR---RPRPPVI 298          
BLAST of mRNA_S-firma_M_contig9042.19979.1 vs. uniprot
Match: K5UK67_PHACS (Uncharacterized protein n=1 Tax=Phanerochaete carnosa (strain HHB-10118-sp) TaxID=650164 RepID=K5UK67_PHACS)

HSP 1 Score: 67.4 bits (163), Expect = 5.950e-8
Identity = 51/181 (28.18%), Postives = 75/181 (41.44%), Query Frame = 1
Query:  895 WLARLTPKAFRAWHRPRVDIVVVYEPSGXXXXXXXXAGHTEAQLGALLGGLSEAHYLGDSVGLTVVIGSGPVPGAVG-DEELYWPRG-----RKVVRGGSLSPSSPRNGXXXXXXXXXXXXXXXXXXXXXPSSLAALALRSWVPRDDDSLVLVLEADQLVSPLFYSWLKAAVLETGYGGAA 1419
            W+  L  + +R W +P+++I V+ +                A L  LL  LS AH+ GD+V L + +     P  +    E  WP G     R+V+ GG L                                     + SW P+ +DS  L+LE D  +SPLFY+W+K A+L   YGG A
Sbjct:  463 WMGSLAAEEWRNWRKPQLEISVITDDR-------------PASLTRLLASLSAAHFFGDTVALRINVEQTAGPQTLRLVHEFEWPHGPVFVHRRVIHGGLLPA----------------------------------VVESWYPQSEDSYGLILEDDVELSPLFYAWIKMALLHYRYGGPA 596          
BLAST of mRNA_S-firma_M_contig9042.19979.1 vs. uniprot
Match: A0A0D2L8T6_HYPSF (Uncharacterized protein n=1 Tax=Hypholoma sublateritium (strain FD-334 SS-4) TaxID=945553 RepID=A0A0D2L8T6_HYPSF)

HSP 1 Score: 66.2 bits (160), Expect = 1.360e-7
Identity = 58/198 (29.29%), Postives = 82/198 (41.41%), Query Frame = 1
Query:  841 GVPLIRLPRKKDASAAALWLARLTPKAFRAWHRPRVDIVVVYEPSGXXXXXXXXAGHTEAQLGALLGGLSEAHYLGDSVGLTVVIGSGPVPGAVGDE-ELYWPRG-----RKVVRGGSLSPSSPRNGXXXXXXXXXXXXXXXXXXXXXPSSLAALALRSWVPRDDDSLVLVLEADQLVSPLFYSWLKAAVLETGYGGA 1416
            G   IR+PR   ++    W++ L+ K ++ WHRPR+DI ++ +                A L  LL  L  A Y GD + L V +       ++     + WP G      +VV GG L                                     + SW PRD+DS  L+LE D  VSPL+Y+WLK A+L   YG A
Sbjct:  453 GATHIRIPRLDLSNTE--WMSALSVKEWQNWHRPRIDISIITKDR-------------PAALTRLLHSLQAARYFGDPLDLRVNVEQDCAAESLRIAGNITWPFGSVFIHHRVVHGGLLPA----------------------------------VVESWYPRDNDSYGLLLEDDIEVSPLYYAWLKMAILRYRYGSA 601          
BLAST of mRNA_S-firma_M_contig9042.19979.1 vs. uniprot
Match: A0A4Q2DCM9_9AGAR (Uncharacterized protein n=1 Tax=Candolleomyces aberdarensis TaxID=2316362 RepID=A0A4Q2DCM9_9AGAR)

HSP 1 Score: 65.1 bits (157), Expect = 3.090e-7
Identity = 50/177 (28.25%), Postives = 74/177 (41.81%), Query Frame = 1
Query:  895 WLARLTPKAFRAWHRPRVDIVVVYEPSGXXXXXXXXAGHTEAQLGALLGGLSEAHYLGDSVGLTVVIGSGPVPGAVGDEELY-WPRG-----RKVVRGGSLSPSSPRNGXXXXXXXXXXXXXXXXXXXXXPSSLAALALRSWVPRDDDSLVLVLEADQLVSPLFYSWLKAAVLETGY 1407
            W+A LT + ++ WH+PR+DI V+                    L  LLG LS A Y GDS+ L + +        +   + Y WP G      ++V GG L                                     + SW PR++D+  L+LE D  +SPLFY+W+K A+L+  Y
Sbjct:  439 WMASLTLQQWKNWHKPRIDISVITRDRPN-------------SLARLLGSLSAARYFGDSIDLRLNVEQDCDFETLKISQTYSWPHGSFFLHHRIVHGGLLPA----------------------------------IVESWYPRNNDTYGLLLEDDVELSPLFYAWVKMAILKYRY 568          
BLAST of mRNA_S-firma_M_contig9042.19979.1 vs. uniprot
Match: A0A1X6N6S1_9APHY (Uncharacterized protein n=2 Tax=Postia placenta TaxID=104341 RepID=A0A1X6N6S1_9APHY)

HSP 1 Score: 60.8 bits (146), Expect = 6.170e-6
Identity = 50/178 (28.09%), Postives = 70/178 (39.33%), Query Frame = 1
Query:  895 WLARLTPKAFRAWHRPRVDIVVVYEPSGXXXXXXXXAGHTEAQLGALLGGLSEAHYLGDSVGLTVVIG-SGPVPGAVGDEELYWPRGR-----KVVRGGSLSPSSPRNGXXXXXXXXXXXXXXXXXXXXXPSSLAALALRSWVPRDDDSLVLVLEADQLVSPLFYSWLKAAVLETGYG 1410
            W+  LT + +++WH P VDI V+                    L  LL  LS A Y GDS+ L V I  +  +      +   W  GR     +V+ GG L+                                    + SW PR + S  L+LE D  +SPLFY+W+K A+L   YG
Sbjct:  385 WMGSLTLQEYKSWHLPHVDISVI-------------TNDRPRSLSRLLASLSTARYFGDSIDLRVNIEQTADLETLKMVDAFEWTHGRMFLHRRVIHGGLLTA----------------------------------VVESWYPRSNHSYGLILEDDVELSPLFYAWVKLALLRYRYG 515          
BLAST of mRNA_S-firma_M_contig9042.19979.1 vs. uniprot
Match: A0A4Y9Z1X4_9APHY (Uncharacterized protein n=2 Tax=Fomitopsis rosea TaxID=34475 RepID=A0A4Y9Z1X4_9APHY)

HSP 1 Score: 59.3 bits (142), Expect = 1.930e-5
Identity = 47/176 (26.70%), Postives = 70/176 (39.77%), Query Frame = 1
Query:  895 WLARLTPKAFRAWHRPRVDIVVVYEPSGXXXXXXXXAGHTEAQLGALLGGLSEAHYLGDSVGLTVVIG-SGPVPGAVGDEELYWPRGR-----KVVRGGSLSPSSPRNGXXXXXXXXXXXXXXXXXXXXXPSSLAALALRSWVPRDDDSLVLVLEADQLVSPLFYSWLKAAVLETG 1404
            W+  LT + FR WH+P+V + V+                    L  LL  LS AHY GD++ L V +  +  +      ++  W  GR     +++ GG L                                     + SW P+ +DS  L+LE D  +SPLFY W+K A+L  G
Sbjct:  462 WIGALTLEEFRNWHKPQVAVSVI-------------TNDRPHSLSRLLDSLSRAHYFGDALDLRVNLEQTADMETQQIVDDFAWNHGRVFLHRRIIHGGLLPA----------------------------------VVESWYPQSNDSYGLILEDDVELSPLFYGWIKLALLRYG 590          
BLAST of mRNA_S-firma_M_contig9042.19979.1 vs. uniprot
Match: A0A5C5FYK6_9BASI (Glycosyltransferase 2 n=1 Tax=Rhodotorula diobovata TaxID=5288 RepID=A0A5C5FYK6_9BASI)

HSP 1 Score: 58.5 bits (140), Expect = 3.830e-5
Identity = 50/180 (27.78%), Postives = 67/180 (37.22%), Query Frame = 1
Query:  889 ALWLARLTPKAFRAWHRPRVDIVVVYEPSGXXXXXXXXAGHTEAQLGALLGGLSEAHYLGDSVGLTVVIGSGPVPGAVGD-------EELYWPRGRKVVRGGSLSPSSPRNGXXXXXXXXXXXXXXXXXXXXXPSSLAALALRSWVPRDDDSLVLVLEADQLVSPLFYSWLKAAVLETGY 1407
            A W+  L  +A R WH PR+D+ VV                    L  LL  L  AHY GD V L+V +          D       +++ WP G   +R   L                                L    + SW P  +D+  ++LE D  VSPLFY WLK A+L+  Y
Sbjct:  805 AEWVGALDLEALRHWHTPRIDLSVV-------------TNDRPVSLHRLLSSLQTAHYYGDDVSLSVNLEQ------TADRLTHRLVDDMRWPHGAFSLRHRILL-----------------------------GGLMPAIVESWYPTSNDTYGVLLEDDVEVSPLFYGWLKFAILQYRY 936          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9042.19979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LCA3_ECTSI1.500e-23066.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KK73_9PHAE1.020e-21765.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2Y3B8_9STRA4.270e-1441.96Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3XR94_HETAK5.400e-1454.76Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
K5UK67_PHACS5.950e-828.18Uncharacterized protein n=1 Tax=Phanerochaete carn... [more]
A0A0D2L8T6_HYPSF1.360e-729.29Uncharacterized protein n=1 Tax=Hypholoma sublater... [more]
A0A4Q2DCM9_9AGAR3.090e-728.25Uncharacterized protein n=1 Tax=Candolleomyces abe... [more]
A0A1X6N6S1_9APHY6.170e-628.09Uncharacterized protein n=2 Tax=Postia placenta Ta... [more]
A0A4Y9Z1X4_9APHY1.930e-526.70Uncharacterized protein n=2 Tax=Fomitopsis rosea T... [more]
A0A5C5FYK6_9BASI3.830e-527.78Glycosyltransferase 2 n=1 Tax=Rhodotorula diobovat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9042contigS-firma_M_contig9042:2014..4255 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score666.8
Seed ortholog evalue9.8e-189
Seed eggNOG ortholog2880.D8LCA3
EggNOG OGs2CMCB@1,2QPYF@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1844
Cds size1827
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9042.19979.1prot_S-firma_M_contig9042.19979.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9042 2020..4244 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828727.7773912-UTR-S-firma_M_contig9042:2013..20191622828727.7773912-UTR-S-firma_M_contig9042:2013..2019Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9042 2014..2019 +
1697105126.031697-UTR-S-firma_M_contig9042:2013..20191697105126.031697-UTR-S-firma_M_contig9042:2013..2019Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9042 2014..2019 +
1622828727.8212345-UTR-S-firma_M_contig9042:4244..42551622828727.8212345-UTR-S-firma_M_contig9042:4244..4255Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9042 4245..4255 +
1697105126.0645094-UTR-S-firma_M_contig9042:4244..42551697105126.0645094-UTR-S-firma_M_contig9042:4244..4255Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9042 4245..4255 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828727.7898529-CDS-S-firma_M_contig9042:2019..21361622828727.7898529-CDS-S-firma_M_contig9042:2019..2136Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9042 2020..2136 +
1697105126.0454466-CDS-S-firma_M_contig9042:2019..21361697105126.0454466-CDS-S-firma_M_contig9042:2019..2136Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9042 2020..2136 +
1622828727.8073957-CDS-S-firma_M_contig9042:2534..42441622828727.8073957-CDS-S-firma_M_contig9042:2534..4244Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9042 2535..4244 +
1697105126.0554743-CDS-S-firma_M_contig9042:2534..42441697105126.0554743-CDS-S-firma_M_contig9042:2534..4244Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9042 2535..4244 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9042.19979.1

>prot_S-firma_M_contig9042.19979.1 ID=prot_S-firma_M_contig9042.19979.1|Name=mRNA_S-firma_M_contig9042.19979.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=609bp
MLAYSLRKHAGVRSYVLPMDLYDSETWGNVDVEWNMQHQGGGATTLRTTV
PMRDRIWHRLLKRGGDYFMSLRYAARPRPIVLVVDGAFDARALRALFLEL
QASYPPTTGGPASSTAAAADSSKDLEAAASSSSSPSLQQQQQQQQQQRPP
RVVLTGRGGTATSCSLAASTLGNRPGGEGEGAGRGPALCDPDSFASAWNL
VAARHFPRLGTGRGGGSGGRDPVLMADLAAGLAGAVGTLKPLAVVSVAGT
GPAAGAADGVGGGGAAIDEALAVVAGQAGVPLIRLPRKKDASAAALWLAR
LTPKAFRAWHRPRVDIVVVYEPSGGGGGGGGGAGHTEAQLGALLGGLSEA
HYLGDSVGLTVVIGSGPVPGAVGDEELYWPRGRKVVRGGSLSPSSPRNGG
GGGGGGGGGGGGGGGDDPSSPSSLAALALRSWVPRDDDSLVLVLEADQLV
SPLFYSWLKAAVLETGYGGAAAPRPSASAPRPPSGAQGSVCLPGVEASGG
GGGGGGGGGAWLLPAGEWRAAQARCLGNAPPLAAAGGGGGVGGGACGGVG
FGVPPTGPSLCPSLKRPDEALVGRTDADGALLGRGGGAPGLLEDGDALAK
FVGRVLFS*
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mRNA from alignment at S-firma_M_contig9042:2014..4255+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9042.19979.1 ID=mRNA_S-firma_M_contig9042.19979.1|Name=mRNA_S-firma_M_contig9042.19979.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=2242bp|location=Sequence derived from alignment at S-firma_M_contig9042:2014..4255+ (Sphaerotrichia firma Sfir_13m male)
GACTACATGCTTGCGTACTCGCTGCGCAAGCACGCCGGGGTGCGGTCGTA CGTTTTGCCCATGGACCTTTACGACAGCGAAACTTGGGGCAACGTGGATG TGGAGTGGAACATGCAACACCAGGTCAGAGGCGCGCGCTACAGTATATAG CCCACGGCAGTAGGACAAGCGCTGGTAATTCAGAAGGTTTTTCTTTTTTG CAGTGAAGGGGAGACATGTCTCTTGTCGCTGGCCCATCGTTGAAAATTTA CGTGTACTGTACCGCCCAAGAGATGATGTACCTGGCTGCTGCCGCCTCAG CTCGAAAACCTCGTTCGTTCGAACGTTCGAACACAACACAGCAGTGGTGG AGGTTGAGAACATTTTAATTCACTCTGCGATCCCCACCCCGAAGCCGTCG GTCGTAGGAAACCTGTCGTCGTAAAGCAAGCCCCGGCACGCACGCCTTGC TCTGCGTGCGGCTTGTTGTGGCTTTTGACTTCCCTCAAGCGTGTTGTTGT TGTTGCGCTCTGCTGCTGCAGGGAGGCGGGGCGACAACGCTCCGCACGAC GGTCCCCATGCGGGACCGCATCTGGCACCGCCTGCTGAAGCGCGGCGGCG ACTACTTCATGTCCCTCCGCTACGCCGCGCGCCCGAGGCCGATCGTGCTC GTGGTCGACGGCGCCTTCGACGCGCGGGCCCTGCGCGCCCTCTTCCTCGA GCTGCAGGCCTCCTACCCGCCCACGACCGGCGGGCCGGCCTCCTCAACCG CCGCCGCCGCCGACTCTTCGAAAGACTTGGAGGCGGCGGCGTCCTCTTCC TCGTCGCCTTCGCTACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGCCC CCCGCGGGTAGTGCTCACCGGCCGCGGCGGCACCGCGACCAGCTGCTCGC TGGCCGCCAGCACGCTGGGGAACCGGCCGGGCGGGGAAGGGGAAGGGGCA GGGCGCGGGCCGGCCCTGTGCGACCCGGACAGCTTCGCGTCGGCGTGGAA CCTGGTGGCCGCCCGGCACTTCCCGAGGCTCGGCACCGGCCGGGGCGGCG GCAGCGGCGGCCGGGACCCCGTGCTGATGGCCGACCTGGCGGCGGGCCTC GCGGGCGCCGTGGGCACCCTCAAGCCGCTGGCGGTGGTGAGCGTCGCGGG GACGGGCCCGGCGGCCGGCGCCGCCGACGGGGTGGGCGGCGGCGGCGCGG CGATCGACGAGGCGCTGGCCGTGGTGGCCGGCCAGGCCGGGGTGCCGCTC ATCCGGCTGCCGAGGAAGAAGGACGCGAGCGCGGCGGCGCTGTGGCTGGC GAGGCTCACGCCCAAGGCGTTCCGCGCGTGGCACCGGCCGCGGGTGGATA TCGTGGTGGTGTACGAGCCCTCCGGCGGCGGCGGCGGCGGCGGCGGCGGC GCCGGCCACACCGAGGCGCAGCTCGGGGCGCTCCTGGGCGGGCTTTCGGA GGCCCACTACCTCGGCGACAGCGTGGGGCTGACGGTGGTGATCGGGTCGG GGCCGGTACCCGGTGCCGTCGGCGACGAAGAGCTCTACTGGCCGCGCGGC CGCAAGGTCGTGCGCGGGGGTTCTCTCTCGCCCTCGTCGCCCAGAAACGG CGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGCGGCGGAGGAG ACGACCCTTCCTCTCCCTCTTCCTTGGCGGCCCTCGCTCTGCGCTCGTGG GTGCCGCGCGACGACGACAGCCTGGTGCTGGTCCTCGAGGCCGACCAGCT CGTGAGCCCTCTCTTCTACTCGTGGCTCAAGGCGGCCGTGCTGGAGACCG GCTACGGCGGCGCGGCGGCGCCGAGGCCTTCGGCCTCCGCGCCCCGACCC CCGTCGGGAGCACAGGGCAGCGTCTGCTTGCCCGGCGTCGAGGCAAGCGG CGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGCGTGGCTTCTGCCGGCCG GGGAATGGCGGGCGGCGCAGGCCCGGTGCTTGGGAAACGCACCCCCCCTC GCAGCGGCAGGAGGGGGGGGCGGGGTTGGTGGAGGAGCTTGCGGGGGGGT CGGGTTCGGCGTGCCGCCCACGGGGCCGTCGCTGTGCCCCTCGCTGAAAC GGCCGGACGAGGCCCTGGTGGGGCGAACAGACGCCGACGGAGCGCTCCTG GGCAGGGGGGGAGGGGCCCCCGGCTTGTTGGAGGATGGCGATGCTTTGGC CAAGTTCGTCGGGCGCGTGCTGTTCTCGTGAGATGCAAGCGG
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Coding sequence (CDS) from alignment at S-firma_M_contig9042:2014..4255+

>mRNA_S-firma_M_contig9042.19979.1 ID=mRNA_S-firma_M_contig9042.19979.1|Name=mRNA_S-firma_M_contig9042.19979.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=3654bp|location=Sequence derived from alignment at S-firma_M_contig9042:2014..4255+ (Sphaerotrichia firma Sfir_13m male)
ATGCTTGCGTACTCGCTGCGCAAGCACGCCGGGGTGCGGTCGTACGTTTT
GCCCATGGACCTTTACGACAGCGAAACTTGGGGCAACGTGGATGTGGAGT
GGAACATGCAACACCAGATGCTTGCGTACTCGCTGCGCAAGCACGCCGGG
GTGCGGTCGTACGTTTTGCCCATGGACCTTTACGACAGCGAAACTTGGGG
CAACGTGGATGTGGAGTGGAACATGCAACACCAGGGAGGCGGGGCGACAA
CGCTCCGCACGACGGTCCCCATGCGGGACCGCATCTGGCACCGCCTGCTG
AAGCGCGGCGGCGACTACTTCATGTCCCTCCGCTACGCCGCGCGCCCGAG
GCCGATCGTGCTCGTGGTCGACGGCGCCTTCGACGCGCGGGCCCTGCGCG
CCCTCTTCCTCGAGCTGCAGGCCTCCTACCCGCCCACGACCGGCGGGCCG
GCCTCCTCAACCGCCGCCGCCGCCGACTCTTCGAAAGACTTGGAGGCGGC
GGCGTCCTCTTCCTCGTCGCCTTCGCTACAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCGCCCCCCGCGGGTAGTGCTCACCGGCCGCGGCGGCACCGCG
ACCAGCTGCTCGCTGGCCGCCAGCACGCTGGGGAACCGGCCGGGCGGGGA
AGGGGAAGGGGCAGGGCGCGGGCCGGCCCTGTGCGACCCGGACAGCTTCG
CGTCGGCGTGGAACCTGGTGGCCGCCCGGCACTTCCCGAGGCTCGGCACC
GGCCGGGGCGGCGGCAGCGGCGGCCGGGACCCCGTGCTGATGGCCGACCT
GGCGGCGGGCCTCGCGGGCGCCGTGGGCACCCTCAAGCCGCTGGCGGTGG
TGAGCGTCGCGGGGACGGGCCCGGCGGCCGGCGCCGCCGACGGGGTGGGC
GGCGGCGGCGCGGCGATCGACGAGGCGCTGGCCGTGGTGGCCGGCCAGGC
CGGGGTGCCGCTCATCCGGCTGCCGAGGAAGAAGGACGCGAGCGCGGCGG
CGCTGTGGCTGGCGAGGCTCACGCCCAAGGCGTTCCGCGCGTGGCACCGG
CCGCGGGTGGATATCGTGGTGGTGTACGAGCCCTCCGGCGGCGGCGGCGG
CGGCGGCGGCGGCGCCGGCCACACCGAGGCGCAGCTCGGGGCGCTCCTGG
GCGGGCTTTCGGAGGCCCACTACCTCGGCGACAGCGTGGGGCTGACGGTG
GTGATCGGGTCGGGGCCGGTACCCGGTGCCGTCGGCGACGAAGAGCTCTA
CTGGCCGCGCGGCCGCAAGGTCGTGCGCGGGGGTTCTCTCTCGCCCTCGT
CGCCCAGAAACGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGT
GGCGGCGGAGGAGACGACCCTTCCTCTCCCTCTTCCTTGGCGGCCCTCGC
TCTGCGCTCGTGGGTGCCGCGCGACGACGACAGCCTGGTGCTGGTCCTCG
AGGCCGACCAGCTCGTGAGCCCTCTCTTCTACTCGTGGCTCAAGGCGGCC
GTGCTGGAGACCGGCTACGGCGGCGCGGCGGCGCCGAGGCCTTCGGCCTC
CGCGCCCCGACCCCCGTCGGGAGCACAGGGCAGCGTCTGCTTGCCCGGCG
TCGAGGCAAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGCGTGG
CTTCTGCCGGCCGGGGAATGGCGGGCGGCGCAGGCCCGGTGCTTGGGAAA
CGCACCCCCCCTCGCAGCGGCAGGAGGGGGGGGCGGGGTTGGTGGAGGAG
CTTGCGGGGGGGTCGGGTTCGGCGTGCCGCCCACGGGGCCGTCGCTGTGC
CCCTCGCTGAAACGGCCGGACGAGGCCCTGGTGGGGCGAACAGACGCCGA
CGGAGCGCTCCTGGGCAGGGGGGGAGGGGCCCCCGGCTTGTTGGAGGATG
GCGATGCTTTGGCCAAGTTCGTCGGGCGCGTGCTGTTCTCGTGAGGAGGC
GGGGCGACAACGCTCCGCACGACGGTCCCCATGCGGGACCGCATCTGGCA
CCGCCTGCTGAAGCGCGGCGGCGACTACTTCATGTCCCTCCGCTACGCCG
CGCGCCCGAGGCCGATCGTGCTCGTGGTCGACGGCGCCTTCGACGCGCGG
GCCCTGCGCGCCCTCTTCCTCGAGCTGCAGGCCTCCTACCCGCCCACGAC
CGGCGGGCCGGCCTCCTCAACCGCCGCCGCCGCCGACTCTTCGAAAGACT
TGGAGGCGGCGGCGTCCTCTTCCTCGTCGCCTTCGCTACAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCGCCCCCCGCGGGTAGTGCTCACCGGCCGCGG
CGGCACCGCGACCAGCTGCTCGCTGGCCGCCAGCACGCTGGGGAACCGGC
CGGGCGGGGAAGGGGAAGGGGCAGGGCGCGGGCCGGCCCTGTGCGACCCG
GACAGCTTCGCGTCGGCGTGGAACCTGGTGGCCGCCCGGCACTTCCCGAG
GCTCGGCACCGGCCGGGGCGGCGGCAGCGGCGGCCGGGACCCCGTGCTGA
TGGCCGACCTGGCGGCGGGCCTCGCGGGCGCCGTGGGCACCCTCAAGCCG
CTGGCGGTGGTGAGCGTCGCGGGGACGGGCCCGGCGGCCGGCGCCGCCGA
CGGGGTGGGCGGCGGCGGCGCGGCGATCGACGAGGCGCTGGCCGTGGTGG
CCGGCCAGGCCGGGGTGCCGCTCATCCGGCTGCCGAGGAAGAAGGACGCG
AGCGCGGCGGCGCTGTGGCTGGCGAGGCTCACGCCCAAGGCGTTCCGCGC
GTGGCACCGGCCGCGGGTGGATATCGTGGTGGTGTACGAGCCCTCCGGCG
GCGGCGGCGGCGGCGGCGGCGGCGCCGGCCACACCGAGGCGCAGCTCGGG
GCGCTCCTGGGCGGGCTTTCGGAGGCCCACTACCTCGGCGACAGCGTGGG
GCTGACGGTGGTGATCGGGTCGGGGCCGGTACCCGGTGCCGTCGGCGACG
AAGAGCTCTACTGGCCGCGCGGCCGCAAGGTCGTGCGCGGGGGTTCTCTC
TCGCCCTCGTCGCCCAGAAACGGCGGCGGCGGCGGCGGCGGCGGCGGCGG
CGGCGGCGGTGGCGGCGGAGGAGACGACCCTTCCTCTCCCTCTTCCTTGG
CGGCCCTCGCTCTGCGCTCGTGGGTGCCGCGCGACGACGACAGCCTGGTG
CTGGTCCTCGAGGCCGACCAGCTCGTGAGCCCTCTCTTCTACTCGTGGCT
CAAGGCGGCCGTGCTGGAGACCGGCTACGGCGGCGCGGCGGCGCCGAGGC
CTTCGGCCTCCGCGCCCCGACCCCCGTCGGGAGCACAGGGCAGCGTCTGC
TTGCCCGGCGTCGAGGCAAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGG
CGGCGCGTGGCTTCTGCCGGCCGGGGAATGGCGGGCGGCGCAGGCCCGGT
GCTTGGGAAACGCACCCCCCCTCGCAGCGGCAGGAGGGGGGGGCGGGGTT
GGTGGAGGAGCTTGCGGGGGGGTCGGGTTCGGCGTGCCGCCCACGGGGCC
GTCGCTGTGCCCCTCGCTGAAACGGCCGGACGAGGCCCTGGTGGGGCGAA
CAGACGCCGACGGAGCGCTCCTGGGCAGGGGGGGAGGGGCCCCCGGCTTG
TTGGAGGATGGCGATGCTTTGGCCAAGTTCGTCGGGCGCGTGCTGTTCTC
GTGA
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