mRNA_S-firma_M_contig9038.19972.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9038.19972.1
Unique NamemRNA_S-firma_M_contig9038.19972.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9038.19972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9038contigS-firma_M_contig9038:1046..2061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size1018
Cds size687
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828726.8460026-CDS-S-firma_M_contig9038:1045..17321622828726.8460026-CDS-S-firma_M_contig9038:1045..1732Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9038 1046..1732 +
1697105125.4919996-CDS-S-firma_M_contig9038:1045..17321697105125.4919996-CDS-S-firma_M_contig9038:1045..1732Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9038 1046..1732 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828726.8577766-UTR-S-firma_M_contig9038:1732..20611622828726.8577766-UTR-S-firma_M_contig9038:1732..2061Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9038 1733..2061 +
1697105125.5014887-UTR-S-firma_M_contig9038:1732..20611697105125.5014887-UTR-S-firma_M_contig9038:1732..2061Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9038 1733..2061 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9038.19972.1prot_S-firma_M_contig9038.19972.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9038 1046..1732 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9038.19972.1

>prot_S-firma_M_contig9038.19972.1 ID=prot_S-firma_M_contig9038.19972.1|Name=mRNA_S-firma_M_contig9038.19972.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=229bp
RYTRFTRYTRCTRYTCHVRYILLVSRYTGYTRYVRYIGQSVHPWHGAAVS
LAGRYTRYIHYNWSAATAVTPGTFVTLIGQPLHPVHTIHPLHPIHLSRSL
HFIGQPLQRIHPLRSLHWGSRYTRGTGQSHLFGSRFARYTRYVRYIGQSR
TTAAVVAVVVAAAKPVKLISRFIWSTAALSLNGHSSAEQRGTADGTTHQK
RTGINHRPDSTQQQGERAAGHLKIDRCA*
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mRNA from alignment at S-firma_M_contig9038:1046..2061+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9038.19972.1 ID=mRNA_S-firma_M_contig9038.19972.1|Name=mRNA_S-firma_M_contig9038.19972.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1016bp|location=Sequence derived from alignment at S-firma_M_contig9038:1046..2061+ (Sphaerotrichia firma Sfir_13m male)
CGTTACACCCGGTTCACACGATACACCCGTTGCACCCGATACACCTGTCA
CGTTCGTTACATTTTATTGGTCAGCCGTTACACCGGATACACCCGTTACG
TTCGTTACATCGGGCAGTCGGTACACCCGTGGCACGGGGCAGCCGTTTCA
TTGGCCGGCCGTTACACCCGTTACATTCATTACAATTGGTCAGCCGCTAC
AGCCGTTACACCCGGTACGTTCGTTACATTGATTGGTCAGCCGTTACACC
CGGTTCACACGATACACCCGTTGCACCCGATACACCTGTCACGTTCGTTA
CATTTTATTGGTCAGCCGTTACAGCGGATACACCCGTTACGTTCGCTACA
TTGGGGCAGTCGGTACACCCGTGGCACGGGGCAGTCGCATTTATTCGGTA
GCCGTTTCGCCCGTTACACCCGTTACGTTCGTTACATCGGGCAGAGCCGT
ACAACCGCTGCAGTCGTTGCAGTCGTCGTTGCAGCCGCTAAACCCGTTAA
ACTGATCAGCCGTTTCATTTGGTCAACAGCTGCTTTGTCACTCAATGGAC
ATTCCTCGGCCGAACAGCGCGGCACGGCAGATGGTACAACACACCAAAAG
AGGACAGGCATCAACCACCGACCAGACTCAACACAACAGCAGGGCGAGCG
TGCTGCGGGGCATCTCAAGATCGATCGATGCGCCTGACTGGCTAAGGCCC
ACCAGCCGTGATAACAAAAAAAAAACTCTTCTGCACTTTTTGCTTTTTGC
TTTCATCCGTGTTGCTGCTTGCCGCTTCCGGAAGCTACGGTATCCTATAT
GCAGCACCGCGTGCCGCGCGCAACCTGTGTGTCCACCGGCGGCACCGTAC
CGTCAAAACCACCGTTGTACATACTGGTACGCACCGCGCACCTTGGCGCA
GCAGTCTGAGCGTGTTACGTTCTTTTCTCACCAAGGTGCGTAAAAGTCGA
CCATCATGGGTTCCCCCTTCTGGAGCGCCGCATCGAGGCTGTCAGCGTCC
AGCGAGACGACGCTGT
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Coding sequence (CDS) from alignment at S-firma_M_contig9038:1046..2061+

>mRNA_S-firma_M_contig9038.19972.1 ID=mRNA_S-firma_M_contig9038.19972.1|Name=mRNA_S-firma_M_contig9038.19972.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1374bp|location=Sequence derived from alignment at S-firma_M_contig9038:1046..2061+ (Sphaerotrichia firma Sfir_13m male)
CGTTACACCCGGTTCACACGATACACCCGTTGCACCCGATACACCTGTCA
CGTTCGTTACATTTTATTGGTCAGCCGTTACACCGGATACACCCGTTACG
TTCGTTACATCGGGCAGTCGGTACACCCGTGGCACGGGGCAGCCGTTTCA
TTGGCCGGCCGTTACACCCGTTACATTCATTACAATTGGTCAGCCGCTAC
AGCCGTTACACCCGGTACGTTCGTTACATTGATTGGTCAGCCGTTACACC
CGGTTCACACGATACACCCGTTGCACCCGATACACCTGTCACGTTCGTTA
CATTTTATTGGTCAGCCGTTACAGCGGATACACCCGTTACGTTCGCTACA
TTGGGGCAGTCGGTACACCCGTGGCACGGGGCAGTCGCATTTATTCGGTA
GCCGTTTCGCCCGTTACACCCGTTACGTTCGTTACATCGGGCAGAGCCGT
ACAACCGCTGCAGTCGTTGCAGTCGTCGTTGCAGCCGCTAAACCCGTTAA
ACTGATCAGCCGTTTCATTTGGTCAACAGCTGCTTTGTCACTCAATGGAC
ATTCCTCGGCCGAACAGCGCGGCACGGCAGATGGTACAACACACCAAAAG
AGGACAGGCATCAACCACCGACCAGACTCAACACAACAGCAGGGCGAGCG
TGCTGCGGGGCATCTCAAGATCGATCGATGCGCCTGACGTTACACCCGGT
TCACACGATACACCCGTTGCACCCGATACACCTGTCACGTTCGTTACATT
TTATTGGTCAGCCGTTACACCGGATACACCCGTTACGTTCGTTACATCGG
GCAGTCGGTACACCCGTGGCACGGGGCAGCCGTTTCATTGGCCGGCCGTT
ACACCCGTTACATTCATTACAATTGGTCAGCCGCTACAGCCGTTACACCC
GGTACGTTCGTTACATTGATTGGTCAGCCGTTACACCCGGTTCACACGAT
ACACCCGTTGCACCCGATACACCTGTCACGTTCGTTACATTTTATTGGTC
AGCCGTTACAGCGGATACACCCGTTACGTTCGCTACATTGGGGCAGTCGG
TACACCCGTGGCACGGGGCAGTCGCATTTATTCGGTAGCCGTTTCGCCCG
TTACACCCGTTACGTTCGTTACATCGGGCAGAGCCGTACAACCGCTGCAG
TCGTTGCAGTCGTCGTTGCAGCCGCTAAACCCGTTAAACTGATCAGCCGT
TTCATTTGGTCAACAGCTGCTTTGTCACTCAATGGACATTCCTCGGCCGA
ACAGCGCGGCACGGCAGATGGTACAACACACCAAAAGAGGACAGGCATCA
ACCACCGACCAGACTCAACACAACAGCAGGGCGAGCGTGCTGCGGGGCAT
CTCAAGATCGATCGATGCGCCTGA
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