mRNA_S-firma_M_contig9022.19960.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9022.19960.1
Unique NamemRNA_S-firma_M_contig9022.19960.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9022.19960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9022contigS-firma_M_contig9022:1463..3188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons4
Model size627
Cds size564
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9022.19960.1prot_S-firma_M_contig9022.19960.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9022 1525..3188 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828725.685471-UTR-S-firma_M_contig9022:1462..15241622828725.685471-UTR-S-firma_M_contig9022:1462..1524Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9022 1463..1524 +
1697105124.7070715-UTR-S-firma_M_contig9022:1462..15241697105124.7070715-UTR-S-firma_M_contig9022:1462..1524Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9022 1463..1524 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828725.6976829-CDS-S-firma_M_contig9022:1524..17881622828725.6976829-CDS-S-firma_M_contig9022:1524..1788Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9022 1525..1788 +
1697105124.716775-CDS-S-firma_M_contig9022:1524..17881697105124.716775-CDS-S-firma_M_contig9022:1524..1788Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9022 1525..1788 +
1622828725.711425-CDS-S-firma_M_contig9022:2132..22641622828725.711425-CDS-S-firma_M_contig9022:2132..2264Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9022 2133..2264 +
1697105124.7254055-CDS-S-firma_M_contig9022:2132..22641697105124.7254055-CDS-S-firma_M_contig9022:2132..2264Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9022 2133..2264 +
1622828725.7235022-CDS-S-firma_M_contig9022:2575..26621622828725.7235022-CDS-S-firma_M_contig9022:2575..2662Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9022 2576..2662 +
1697105124.7339296-CDS-S-firma_M_contig9022:2575..26621697105124.7339296-CDS-S-firma_M_contig9022:2575..2662Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9022 2576..2662 +
1622828725.7356055-CDS-S-firma_M_contig9022:3107..31881622828725.7356055-CDS-S-firma_M_contig9022:3107..3188Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9022 3108..3188 +
1697105124.7446654-CDS-S-firma_M_contig9022:3107..31881697105124.7446654-CDS-S-firma_M_contig9022:3107..3188Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9022 3108..3188 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9022.19960.1

>prot_S-firma_M_contig9022.19960.1 ID=prot_S-firma_M_contig9022.19960.1|Name=mRNA_S-firma_M_contig9022.19960.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=188bp
MRSFNPSFGWFALCMYVYVGLLLALLSTSHASGAMPTTSTAEEERQGTGH
EVGTYRSCAALAAGGGGSVTLAPGVASILRPIKCDQSLTVEITGQVQLQS
DDILETTGVHFLVHPTGTLTITAPAIDVTRTEESLPIFTVHGRLELEATG
FTPDLLEGAAADDEHGVMAIAEGGSLHSNPEQAVGYSE
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mRNA from alignment at S-firma_M_contig9022:1463..3188+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9022.19960.1 ID=mRNA_S-firma_M_contig9022.19960.1|Name=mRNA_S-firma_M_contig9022.19960.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1726bp|location=Sequence derived from alignment at S-firma_M_contig9022:1463..3188+ (Sphaerotrichia firma Sfir_13m male)
ACCTGACCTGCCTTGGTGATACAATAGTGCTGTTGAGCTGATTAGTGCGA
CTCTTCTGTGAGATGCGATCTTTCAATCCCAGCTTCGGCTGGTTTGCTCT
GTGCATGTACGTGTACGTCGGGCTCCTGCTTGCCCTGCTGAGCACGTCTC
ATGCCTCGGGCGCGATGCCCACCACTTCCACCGCCGAGGAGGAAAGGCAA
GGGACAGGCCATGAAGTCGGGACCTACCGCTCGTGCGCGGCTCTGGCTGC
CGGCGGGGGAGGTTCGGTCACCTTGGCTCCGGGAGTGGCTTCAATTCTGC
GCCCGATCAAGTGTGATCAATCGCTTGTGAGTGCCTTTCTCTCGGCTACC
TCATGTATGTCTGTCTGGCGTAGTCTGTATTCAACAAGATACCGCTTTGT
TTCCCGCCTTTCTTGTTGTGTTCCAGAAACCAAAAAAGCGTTTGACTCCC
AAGCTGCGATATCGCGTGTGGCGTGCACATGCATGTAGAGGGCACGATGT
GTGAGTCTTCCGTGGCTCGTTGGAGCGCGCGAGCGGCTTGAGTGAGAAAG
CGTTTCGGATTCATCCGTCGCGGCACCAACCATTATTTTTATCACCCTCC
TTGTTGTTCTCTCCTGTCCCCCCTCTCACTTCCGCGCGTATGTTTGCGTC
TTCCACACAACTGCTGCTAGACGGTGGAGATCACGGGACAGGTTCAGCTG
CAGTCTGACGACATCCTAGAGACGACCGGCGTGCACTTCCTCGTGCACCC
TACGGGAACCCTGACCATCACCGCGCCCGCGATCGACGTGACCCGCACTG
AGGTGAGCATAATAACGATGACAATGCAGATAGATGAGATGCGGGCAGCA
GTCAAGACAGGAAAAGGAATTCCCAACCAACCTGGCGGGCGTGTAGCTGC
AGCAGGTGTGACGGAAGGAAACGCAAGCACAACACTACACACAGCAGTAG
CCTAGAGCTCGTGTTTCTCTGCGCTGACTGCTGCTGGAAAATACACGAAC
TGAACAATTTTCAATTTTCATATGCCCGGGCGGCGGGCGGGGTGGGAGGT
TTTCGATTTCATCAGTATCACACACACCGCCGCTGCTGCTGTGCTTGCCT
GTGTCTGCTGCAGGAGAGCCTCCCCATCTTCACCGTGCACGGCCGGCTCG
AGCTGGAGGCGACGGGATTCACTCCGGACCTCTTGGAGGGAGCCGCAGCG
GTGAGAAAAAGTTGAAAGTTTGTTGTTGTGGCTGTCCATGAGCATTAATT
TGTGTTATCTCTGTGAATGAATGCCATGGAGAAGGAGGCAGGCAGCCAGG
CACGACGGGGGGTGGGTCTGCTGCCACGAGAGAACAGTTTCTTCACCACG
CCGCCGAGGCTTTTGCTCTGCTGCTGCTGCTGCTGTGGTTACATGCACAC
GTTGCCCTGCCTGCTGTGCATGTCCCGCTGAGGAGGTAGACCAGGTGTAG
ACTGTGTAGCGACCTCTATAGCCCTCTCTCCATGATAAGCCTACTGCACA
CCCGACACAGGAAGCAGCACCCTTTTCCCGCGAACGAACCCAGCTTCTCA
TCACGATGATACGTACATACATACGCTTCTCTGGGCTGCTGCTGCTGCTC
TGCGGATACGGAAACGTACATTACATACATCTACACAACAAGCAGGATGA
TGAGCACGGGGTCATGGCAATCGCCGAGGGGGGTAGCTTGCACTCGAACC
CCGAGCAAGCGGTGGGCTACAGCGAG
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Coding sequence (CDS) from alignment at S-firma_M_contig9022:1463..3188+

>mRNA_S-firma_M_contig9022.19960.1 ID=mRNA_S-firma_M_contig9022.19960.1|Name=mRNA_S-firma_M_contig9022.19960.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1128bp|location=Sequence derived from alignment at S-firma_M_contig9022:1463..3188+ (Sphaerotrichia firma Sfir_13m male)
ATGCGATCTTTCAATCCCAGCTTCGGCTGGTTTGCTCTGTGCATGTACGT
GTACGTCGGGCTCCTGCTTGCCCTGCTGAGCACGTCTCATGCCTCGGGCG
CGATGCCCACCACTTCCACCGCCGAGGAGGAAAGGCAAGGGACAGGCCAT
GAAGTCGGGACCTACCGCTCGTGCGCGGCTCTGGCTGCCGGCGGGGGAGG
TTCGGTCACCTTGGCTCCGGGAGTGGCTTCAATTCTGCGCCCGATCAAGT
GTGATCAATCGCTTATGCGATCTTTCAATCCCAGCTTCGGCTGGTTTGCT
CTGTGCATGTACGTGTACGTCGGGCTCCTGCTTGCCCTGCTGAGCACGTC
TCATGCCTCGGGCGCGATGCCCACCACTTCCACCGCCGAGGAGGAAAGGC
AAGGGACAGGCCATGAAGTCGGGACCTACCGCTCGTGCGCGGCTCTGGCT
GCCGGCGGGGGAGGTTCGGTCACCTTGGCTCCGGGAGTGGCTTCAATTCT
GCGCCCGATCAAGTGTGATCAATCGCTTACGGTGGAGATCACGGGACAGG
TTCAGCTGCAGTCTGACGACATCCTAGAGACGACCGGCGTGCACTTCCTC
GTGCACCCTACGGGAACCCTGACCATCACCGCGCCCGCGATCGACGTGAC
CCGCACTGAGACGGTGGAGATCACGGGACAGGTTCAGCTGCAGTCTGACG
ACATCCTAGAGACGACCGGCGTGCACTTCCTCGTGCACCCTACGGGAACC
CTGACCATCACCGCGCCCGCGATCGACGTGACCCGCACTGAGGAGAGCCT
CCCCATCTTCACCGTGCACGGCCGGCTCGAGCTGGAGGCGACGGGATTCA
CTCCGGACCTCTTGGAGGGAGCCGCAGCGGAGAGCCTCCCCATCTTCACC
GTGCACGGCCGGCTCGAGCTGGAGGCGACGGGATTCACTCCGGACCTCTT
GGAGGGAGCCGCAGCGGATGATGAGCACGGGGTCATGGCAATCGCCGAGG
GGGGTAGCTTGCACTCGAACCCCGAGCAAGCGGTGGGCTACAGCGAGGAT
GATGAGCACGGGGTCATGGCAATCGCCGAGGGGGGTAGCTTGCACTCGAA
CCCCGAGCAAGCGGTGGGCTACAGCGAG
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