mRNA_S-firma_M_contig9019.19954.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9019.19954.1
Unique NamemRNA_S-firma_M_contig9019.19954.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9019.19954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9019contigS-firma_M_contig9019:2706..3503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size798
Cds size498
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828724.8551178-UTR-S-firma_M_contig9019:2705..30051622828724.8551178-UTR-S-firma_M_contig9019:2705..3005Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9019 2706..3005 +
1697105124.2131193-UTR-S-firma_M_contig9019:2705..30051697105124.2131193-UTR-S-firma_M_contig9019:2705..3005Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9019 2706..3005 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828724.8674235-CDS-S-firma_M_contig9019:3005..35031622828724.8674235-CDS-S-firma_M_contig9019:3005..3503Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9019 3006..3503 +
1697105124.2233307-CDS-S-firma_M_contig9019:3005..35031697105124.2233307-CDS-S-firma_M_contig9019:3005..3503Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9019 3006..3503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9019.19954.1prot_S-firma_M_contig9019.19954.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9019 3006..3503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9019.19954.1

>prot_S-firma_M_contig9019.19954.1 ID=prot_S-firma_M_contig9019.19954.1|Name=mRNA_S-firma_M_contig9019.19954.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=166bp
MCAGSRGEVEQLRQGNAIDMALLLEHSTYDTSSEVAYRVVPRTRCWIVGW
AYRGFLMPISRNREKNQRYTSTREGECSPVPPQPSPSSKRRHHMSIKRWG
RATRHEREGSIAAASSSQQQAARQNNHVTTNGTFAVGSHQAHRQGLEFKF
ELRARSSLRLSDEFWR
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mRNA from alignment at S-firma_M_contig9019:2706..3503+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9019.19954.1 ID=mRNA_S-firma_M_contig9019.19954.1|Name=mRNA_S-firma_M_contig9019.19954.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=798bp|location=Sequence derived from alignment at S-firma_M_contig9019:2706..3503+ (Sphaerotrichia firma Sfir_13m male)
GTACCCCTTGGTTGTGGAGAGTTCTGCAAACCTTGGCTACATTTGTCGAC
CCCCCCAAAAGGGTAAAAATTTGCCGGCCCCCCATTTCTTAATACCGTAA
TACCAACCAACCACTGACATCAGTCTAGAGGGGTTGTGCATGCAGTCGAG
AACAATATCGGCCTCTACTACTGGTGTACCTCTCACGACGAAAAACACGG
TGAGCCCAACGTTATTCCTTCTCCCACATCACACATCACAAACACTGCTC
CCTTTCCAACCGCAACACCATCCGGCTCCCTCGTTCTGGGTAGATACAAT
ATGTGTGCTGGTTCACGTGGGGAGGTGGAACAACTTCGCCAAGGGAATGC
GATTGACATGGCGCTTCTCCTCGAACATTCCACCTACGACACAAGCAGTG
AAGTAGCCTATCGCGTTGTTCCTCGCACGCGGTGCTGGATTGTTGGTTGG
GCTTACCGAGGCTTCTTGATGCCCATCTCGAGGAACAGAGAGAAGAACCA
ACGTTATACATCCACACGAGAAGGCGAGTGCTCTCCAGTACCGCCGCAAC
CGTCGCCTTCATCCAAAAGAAGACACCACATGTCGATTAAGAGGTGGGGA
AGGGCAACACGTCATGAACGGGAAGGGTCAATCGCGGCAGCAAGCAGCAG
CCAGCAGCAAGCAGCAAGACAAAACAACCACGTAACGACCAACGGCACGT
TCGCTGTAGGCTCACATCAGGCTCACCGGCAAGGTCTGGAATTTAAGTTC
GAACTCCGTGCACGTTCGAGTCTTCGGCTCTCTGATGAGTTCTGGCGC
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Coding sequence (CDS) from alignment at S-firma_M_contig9019:2706..3503+

>mRNA_S-firma_M_contig9019.19954.1 ID=mRNA_S-firma_M_contig9019.19954.1|Name=mRNA_S-firma_M_contig9019.19954.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=996bp|location=Sequence derived from alignment at S-firma_M_contig9019:2706..3503+ (Sphaerotrichia firma Sfir_13m male)
ATGTGTGCTGGTTCACGTGGGGAGGTGGAACAACTTCGCCAAGGGAATGC
GATTGACATGGCGCTTCTCCTCGAACATTCCACCTACGACACAAGCAGTG
AAGTAGCCTATCGCGTTGTTCCTCGCACGCGGTGCTGGATTGTTGGTTGG
GCTTACCGAGGCTTCTTGATGCCCATCTCGAGGAACAGAGAGAAGAACCA
ACGTTATACATCCACACGAGAAGGCGAGTGCTCTCCAGTACCGCCGCAAC
CGTCGCCTTCATCCAAAAGAAGACACCACATGTCGATTAAGAGGTGGGGA
AGGGCAACACGTCATGAACGGGAAGGGTCAATCGCGGCAGCAAGCAGCAG
CCAGCAGCAAGCAGCAAGACAAAACAACCACGTAACGACCAACGGCACGT
TCGCTGTAGGCTCACATCAGGCTCACCGGCAAGGTCTGGAATTTAAGTTC
GAACTCCGTGCACGTTCGAGTCTTCGGCTCTCTGATGAGTTCTGGCGCAT
GTGTGCTGGTTCACGTGGGGAGGTGGAACAACTTCGCCAAGGGAATGCGA
TTGACATGGCGCTTCTCCTCGAACATTCCACCTACGACACAAGCAGTGAA
GTAGCCTATCGCGTTGTTCCTCGCACGCGGTGCTGGATTGTTGGTTGGGC
TTACCGAGGCTTCTTGATGCCCATCTCGAGGAACAGAGAGAAGAACCAAC
GTTATACATCCACACGAGAAGGCGAGTGCTCTCCAGTACCGCCGCAACCG
TCGCCTTCATCCAAAAGAAGACACCACATGTCGATTAAGAGGTGGGGAAG
GGCAACACGTCATGAACGGGAAGGGTCAATCGCGGCAGCAAGCAGCAGCC
AGCAGCAAGCAGCAAGACAAAACAACCACGTAACGACCAACGGCACGTTC
GCTGTAGGCTCACATCAGGCTCACCGGCAAGGTCTGGAATTTAAGTTCGA
ACTCCGTGCACGTTCGAGTCTTCGGCTCTCTGATGAGTTCTGGCGC
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