mRNA_S-firma_M_contig9013.19951.1 (mRNA) Sphaerotrichia firma Sfir_13m male
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Overview
Homology
BLAST of mRNA_S-firma_M_contig9013.19951.1 vs. uniprot
Match: A0A6H5JSB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSB6_9PHAE) HSP 1 Score: 385 bits (988), Expect = 3.420e-121 Identity = 247/506 (48.81%), Postives = 291/506 (57.51%), Query Frame = 2
Query: 317 LPGYVFDPARNRFFRVVKDSLGTPGTTGRGESHANTGRKITISVVGVRNEGPKTPHRKGGKIGGGAGAXXXXXXXXXXXGSRGPVVSSAVARVGG-AAAVTAXXXXXXXXARSSSRTA-------GSRGLHSYAMNSRRGLWGFGSGTPGSHGSGAVGAMPGGPERKHRAGVESIVSSSRFRLRAVAPWAHGTP--GAAYSAIEWDAERSVLAVGTVSGALGVMATGPGPASGGGDRPRQGVQRFS-RWRSWARRDEEHVCWATAASWASGQVSDIKFRTNGNEWACATASLGSAGEPGGVNARFWREEGQEGARDVVNFFSGARVCEKRLRLGSVLCTEWDPLTPSRLAVGPSSSSPVAFFDVEEQRLTPVAKLSGDVFSMSFLPITAPGAGHAFVCGLRDGSVVLVDPRQPPRQNLTTTVAGNLASAGSAXXXXXXXXXXXXXARFSGTRRYGGGGGADTENLLRLDCSSVDHTHILRDGTRCLVKGRSGGLQSVDLRFFGGRG 1801
LPG++FDPARNR+FR VKD GTPGT +S + + I ++ GP TP + G SRG S+ VA GG + A A ++ RT G RGLHSYAM+SRRGLWG+ T S G +P PER R G+ES VSSSRFR+R PWAH + GA YSA++WDA R VL G +G L VM TG GGGD ++ F+ RW AR++EE V A+ QVSDIKFR +G EWACATASLG G+PGGV ARFW G D+VN FS R+ +++L GS CTEWDPLTP+RLA+GPS+ SPV FFDV++QR+ PVAKLSGDVFSMSFLP APGAG+A VCGLRDG+VVLVDPRQP R T AG L + R D SSVDHTHILRDGTRCLVK RSG LQ DLRFFG RG
Sbjct: 112 LPGHMFDPARNRYFRCVKDCQGTPGTV-VADSKSKQNLRSKIGGGKSKSSGPPTPPARTGSS----------------KASRGESRSNFVANHGGNGRSYVAAAASAGCPADAAPRTGHLDIGSVGRRGLHSYAMSSRRGLWGWDDRTRRSCG------LPARPERLRRIGLESAVSSSRFRVRDHVPWAHTSVIHGAGYSAVDWDAGRGVLIAGRKNGGLAVMMTGAPMNVGGGDGGDAQLRGFAPRWGG-ARKEEERVLLTAASRRWRSQVSDIKFRGHGAEWACATASLGDGGQPGGVTARFWTGRG-----DLVNVFSEGRLVDQQLHRGSAWCTEWDPLTPARLAIGPSTCSPVVFFDVDQQRVIPVAKLSGDVFSMSFLPAAAPGAGNALVCGLRDGTVVLVDPRQPYRHR-TPAAAGTLLAP-------------------------------------RADPSSVDHTHILRDGTRCLVKDRSGCLQVTDLRFFGHRG 550
BLAST of mRNA_S-firma_M_contig9013.19951.1 vs. uniprot
Match: D8LEC8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEC8_ECTSI) HSP 1 Score: 328 bits (840), Expect = 5.760e-102 Identity = 198/375 (52.80%), Postives = 227/375 (60.53%), Query Frame = 2
Query: 695 MNSRRGLWGFGSGTPGSHGSGAVGAMPGGPERKHRAGVESIVSSSRFRLRAVAPWAHGTP--GAAYSAIEWDAERSVLAVGTVSGALGVMATGPGPAS----GGGDRPRQGVQRFSRWRSWARRDEEHVCWATAASWASGQVSDIKFRTNGNEWACATASLGSAGEPGGVNARFWREEGQEGARDVVNFFSGARVCEKRLRLGSVLCTEWDPLTPSRLAVGPSSSSPVAFFDVEEQRLTPVAKLSGDVFSMSFLPITAPGAGHAFVCGLRDGSVVLVDPRQPPRQNLTTTVAGNLASAGSAXXXXXXXXXXXXXARFSGTRRYGGGGGADTENLLRLDCSSVDHTHILRDGTRCLVKGRSGGLQSVDLRFFGGRG 1801
M SRRGLWG+ T S G +P GPER R G+ES VSSSRFR+R APWAH + GA YSA++WDA R VL G +G L VM TG P + GGGD P +G RW + +E + A + W S QVSDIKFR + EWACATASLG G+PGGV ARFW G D+VN FS AR+ +++L GS CTEWDPLTP+RLA+GPS+ SPV FFDV++QR P+AKLSGDVFSMSFLP APGAG A VCGLRDG+VVLVD RQP T AG L + R D SSVDHTHILRDGTRCLVK RSG LQ DLRF G RG
Sbjct: 1 MRSRRGLWGWDDRTRSSCG------LPAGPERLRRIGLESAVSSSRFRVRDHAPWAHTSVIHGAGYSAVDWDAGRGVLIAGRKNGGLAVMMTGA-PMNVGDGGGGDAPLRGFA--PRWGGVRKVEERVLLTAASTRWRS-QVSDIKFRGHAEEWACATASLGGGGQPGGVTARFWTGRG-----DLVNVFSEARLVDQQLHRGSAWCTEWDPLTPARLAIGPSTCSPVVFFDVDQQRPIPIAKLSGDVFSMSFLPAAAPGAGSALVCGLRDGTVVLVDSRQPYHHG-TAAAAGTLLAP-------------------------------------RADPSSVDHTHILRDGTRCLVKDRSGCLQVTDLRFSGHRG 322 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9013.19951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_M_contig9013.19951.1 >prot_S-firma_M_contig9013.19951.1 ID=prot_S-firma_M_contig9013.19951.1|Name=mRNA_S-firma_M_contig9013.19951.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=583bp MPCLPPTKVRRKGRGKGQRERRRNGGSNNITTSRRLAKRRQHHTFWPRWRback to top mRNA from alignment at S-firma_M_contig9013:63..3733- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_M_contig9013.19951.1 ID=mRNA_S-firma_M_contig9013.19951.1|Name=mRNA_S-firma_M_contig9013.19951.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=3671bp|location=Sequence derived from alignment at S-firma_M_contig9013:63..3733- (Sphaerotrichia firma Sfir_13m male)back to top Coding sequence (CDS) from alignment at S-firma_M_contig9013:63..3733- >mRNA_S-firma_M_contig9013.19951.1 ID=mRNA_S-firma_M_contig9013.19951.1|Name=mRNA_S-firma_M_contig9013.19951.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=3498bp|location=Sequence derived from alignment at S-firma_M_contig9013:63..3733- (Sphaerotrichia firma Sfir_13m male)back to top |