mRNA_S-firma_M_contig901.19946.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig901.19946.1
Unique NamemRNA_S-firma_M_contig901.19946.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig901.19946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig901contigS-firma_M_contig901:17865..19157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1295
Cds size1293
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828723.6551929-CDS-S-firma_M_contig901:17864..191571622828723.6551929-CDS-S-firma_M_contig901:17864..19157Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig901 17865..19157 +
1697105123.4530146-CDS-S-firma_M_contig901:17864..191571697105123.4530146-CDS-S-firma_M_contig901:17864..19157Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig901 17865..19157 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig901.19946.1prot_S-firma_M_contig901.19946.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig901 17865..19157 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig901.19946.1

>prot_S-firma_M_contig901.19946.1 ID=prot_S-firma_M_contig901.19946.1|Name=mRNA_S-firma_M_contig901.19946.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=431bp
QLYWPSHLANLENMREERALSSHPRTLASSSGDSPAQQHLELAHPVSSAS
APGSSPAAALGHGATAVPRQKDVSNLGPVKSQLLASDPACADADTGSSHS
ETEDISFENAERLLAEDTAAASATSAPAGMAATVSAAGVVGKYDTAGCTA
AGQERTMTADAAEEVDAAAAAAERSDLVMAQEHEHHQQQELITPGRILEL
VEVSRTTEENFRELIRFLGRTLSDPACVSASFALPQPPPGTAATCNNAET
GAGKQQREQKQGQGQPGLRPPDVAGPVSDAGTPAAATASLETNLVGTPEE
SPASRKTSTLVSLSDAEAEAAPATLAAERPRAPPSPAAFRPNANSDEHEW
RDRSPVGMDVKAAAEVWKVLVELDEEGVTGAALNALDSLAQTLLVQSFLA
RQATGEEVAKPAAAAAAAAARTPGGAALEER
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mRNA from alignment at S-firma_M_contig901:17865..19157+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig901.19946.1 ID=mRNA_S-firma_M_contig901.19946.1|Name=mRNA_S-firma_M_contig901.19946.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1293bp|location=Sequence derived from alignment at S-firma_M_contig901:17865..19157+ (Sphaerotrichia firma Sfir_13m male)
CAATTGTACTGGCCGTCGCACCTTGCAAACCTCGAAAACATGCGTGAGGA
GAGAGCGTTATCGTCCCATCCCCGAACTTTGGCATCATCTTCTGGGGACA
GCCCTGCCCAGCAGCACCTAGAGCTCGCCCACCCTGTTTCGTCAGCATCA
GCACCAGGGTCGTCACCAGCAGCAGCACTAGGCCACGGGGCGACAGCCGT
TCCACGCCAGAAGGATGTCTCGAACCTAGGGCCCGTGAAGTCGCAGCTCC
TGGCGAGCGATCCGGCCTGTGCTGACGCAGATACCGGATCATCGCATTCC
GAGACCGAGGATATTTCTTTCGAGAATGCGGAGAGACTTCTTGCTGAGGA
TACAGCAGCCGCTAGTGCTACTAGTGCTCCTGCGGGCATGGCTGCCACAG
TTTCCGCTGCTGGTGTGGTCGGGAAATATGACACGGCTGGATGCACCGCT
GCTGGGCAGGAGAGAACGATGACAGCTGACGCCGCCGAGGAAGTAGATGC
TGCTGCCGCTGCGGCTGAACGCTCTGATCTGGTTATGGCGCAAGAACATG
AGCACCACCAGCAGCAAGAGCTCATAACTCCAGGCCGAATCCTAGAGCTC
GTGGAGGTGAGCCGCACCACCGAGGAGAACTTCCGCGAGCTCATCCGCTT
CCTGGGCAGGACTCTCTCGGACCCGGCCTGTGTGTCGGCCAGCTTTGCCC
TGCCGCAGCCACCACCGGGGACAGCTGCTACGTGCAACAACGCGGAGACA
GGCGCAGGCAAGCAGCAGAGGGAGCAGAAGCAGGGGCAGGGGCAGCCTGG
GCTTAGACCGCCGGACGTTGCGGGGCCTGTGAGCGATGCTGGTACCCCTG
CCGCCGCCACCGCCTCCCTAGAAACAAATCTCGTCGGGACACCAGAAGAA
TCTCCTGCCTCACGCAAGACCTCTACACTTGTTAGCCTCTCCGACGCCGA
AGCGGAAGCAGCACCGGCAACACTCGCCGCCGAACGACCTCGAGCTCCTC
CCTCCCCCGCAGCGTTTCGTCCCAACGCTAACAGCGACGAGCATGAGTGG
AGAGACCGGTCGCCGGTCGGGATGGACGTCAAGGCGGCCGCGGAGGTGTG
GAAAGTGCTCGTTGAGCTGGACGAGGAAGGCGTTACCGGCGCCGCCTTGA
ACGCCCTGGATTCGCTGGCCCAAACGCTGCTCGTCCAGAGCTTTCTAGCG
CGTCAGGCGACGGGAGAAGAGGTAGCGAAACCTGCGGCGGCGGCGGCGGC
GGCGGCAGCTCGAACGCCCGGCGGGGCTGCTCTCGAGGAGCGC
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Coding sequence (CDS) from alignment at S-firma_M_contig901:17865..19157+

>mRNA_S-firma_M_contig901.19946.1 ID=mRNA_S-firma_M_contig901.19946.1|Name=mRNA_S-firma_M_contig901.19946.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=2586bp|location=Sequence derived from alignment at S-firma_M_contig901:17865..19157+ (Sphaerotrichia firma Sfir_13m male)
CAATTGTACTGGCCGTCGCACCTTGCAAACCTCGAAAACATGCGTGAGGA
GAGAGCGTTATCGTCCCATCCCCGAACTTTGGCATCATCTTCTGGGGACA
GCCCTGCCCAGCAGCACCTAGAGCTCGCCCACCCTGTTTCGTCAGCATCA
GCACCAGGGTCGTCACCAGCAGCAGCACTAGGCCACGGGGCGACAGCCGT
TCCACGCCAGAAGGATGTCTCGAACCTAGGGCCCGTGAAGTCGCAGCTCC
TGGCGAGCGATCCGGCCTGTGCTGACGCAGATACCGGATCATCGCATTCC
GAGACCGAGGATATTTCTTTCGAGAATGCGGAGAGACTTCTTGCTGAGGA
TACAGCAGCCGCTAGTGCTACTAGTGCTCCTGCGGGCATGGCTGCCACAG
TTTCCGCTGCTGGTGTGGTCGGGAAATATGACACGGCTGGATGCACCGCT
GCTGGGCAGGAGAGAACGATGACAGCTGACGCCGCCGAGGAAGTAGATGC
TGCTGCCGCTGCGGCTGAACGCTCTGATCTGGTTATGGCGCAAGAACATG
AGCACCACCAGCAGCAAGAGCTCATAACTCCAGGCCGAATCCTAGAGCTC
GTGGAGGTGAGCCGCACCACCGAGGAGAACTTCCGCGAGCTCATCCGCTT
CCTGGGCAGGACTCTCTCGGACCCGGCCTGTGTGTCGGCCAGCTTTGCCC
TGCCGCAGCCACCACCGGGGACAGCTGCTACGTGCAACAACGCGGAGACA
GGCGCAGGCAAGCAGCAGAGGGAGCAGAAGCAGGGGCAGGGGCAGCCTGG
GCTTAGACCGCCGGACGTTGCGGGGCCTGTGAGCGATGCTGGTACCCCTG
CCGCCGCCACCGCCTCCCTAGAAACAAATCTCGTCGGGACACCAGAAGAA
TCTCCTGCCTCACGCAAGACCTCTACACTTGTTAGCCTCTCCGACGCCGA
AGCGGAAGCAGCACCGGCAACACTCGCCGCCGAACGACCTCGAGCTCCTC
CCTCCCCCGCAGCGTTTCGTCCCAACGCTAACAGCGACGAGCATGAGTGG
AGAGACCGGTCGCCGGTCGGGATGGACGTCAAGGCGGCCGCGGAGGTGTG
GAAAGTGCTCGTTGAGCTGGACGAGGAAGGCGTTACCGGCGCCGCCTTGA
ACGCCCTGGATTCGCTGGCCCAAACGCTGCTCGTCCAGAGCTTTCTAGCG
CGTCAGGCGACGGGAGAAGAGGTAGCGAAACCTGCGGCGGCGGCGGCGGC
GGCGGCAGCTCGAACGCCCGGCGGGGCTGCTCTCGAGGAGCGCCAATTGT
ACTGGCCGTCGCACCTTGCAAACCTCGAAAACATGCGTGAGGAGAGAGCG
TTATCGTCCCATCCCCGAACTTTGGCATCATCTTCTGGGGACAGCCCTGC
CCAGCAGCACCTAGAGCTCGCCCACCCTGTTTCGTCAGCATCAGCACCAG
GGTCGTCACCAGCAGCAGCACTAGGCCACGGGGCGACAGCCGTTCCACGC
CAGAAGGATGTCTCGAACCTAGGGCCCGTGAAGTCGCAGCTCCTGGCGAG
CGATCCGGCCTGTGCTGACGCAGATACCGGATCATCGCATTCCGAGACCG
AGGATATTTCTTTCGAGAATGCGGAGAGACTTCTTGCTGAGGATACAGCA
GCCGCTAGTGCTACTAGTGCTCCTGCGGGCATGGCTGCCACAGTTTCCGC
TGCTGGTGTGGTCGGGAAATATGACACGGCTGGATGCACCGCTGCTGGGC
AGGAGAGAACGATGACAGCTGACGCCGCCGAGGAAGTAGATGCTGCTGCC
GCTGCGGCTGAACGCTCTGATCTGGTTATGGCGCAAGAACATGAGCACCA
CCAGCAGCAAGAGCTCATAACTCCAGGCCGAATCCTAGAGCTCGTGGAGG
TGAGCCGCACCACCGAGGAGAACTTCCGCGAGCTCATCCGCTTCCTGGGC
AGGACTCTCTCGGACCCGGCCTGTGTGTCGGCCAGCTTTGCCCTGCCGCA
GCCACCACCGGGGACAGCTGCTACGTGCAACAACGCGGAGACAGGCGCAG
GCAAGCAGCAGAGGGAGCAGAAGCAGGGGCAGGGGCAGCCTGGGCTTAGA
CCGCCGGACGTTGCGGGGCCTGTGAGCGATGCTGGTACCCCTGCCGCCGC
CACCGCCTCCCTAGAAACAAATCTCGTCGGGACACCAGAAGAATCTCCTG
CCTCACGCAAGACCTCTACACTTGTTAGCCTCTCCGACGCCGAAGCGGAA
GCAGCACCGGCAACACTCGCCGCCGAACGACCTCGAGCTCCTCCCTCCCC
CGCAGCGTTTCGTCCCAACGCTAACAGCGACGAGCATGAGTGGAGAGACC
GGTCGCCGGTCGGGATGGACGTCAAGGCGGCCGCGGAGGTGTGGAAAGTG
CTCGTTGAGCTGGACGAGGAAGGCGTTACCGGCGCCGCCTTGAACGCCCT
GGATTCGCTGGCCCAAACGCTGCTCGTCCAGAGCTTTCTAGCGCGTCAGG
CGACGGGAGAAGAGGTAGCGAAACCTGCGGCGGCGGCGGCGGCGGCGGCA
GCTCGAACGCCCGGCGGGGCTGCTCTCGAGGAGCGC
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