mRNA_S-firma_M_contig901.19943.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig901.19943.1
Unique NamemRNA_S-firma_M_contig901.19943.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig901.19943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig901contigS-firma_M_contig901:2466..3344 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size591
Cds size558
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig901.19943.1prot_S-firma_M_contig901.19943.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig901 2466..3312 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828723.5829918-CDS-S-firma_M_contig901:2465..29901622828723.5829918-CDS-S-firma_M_contig901:2465..2990Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig901 2466..2990 -
1697105123.4214497-CDS-S-firma_M_contig901:2465..29901697105123.4214497-CDS-S-firma_M_contig901:2465..2990Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig901 2466..2990 -
1622828723.5993643-CDS-S-firma_M_contig901:3279..33121622828723.5993643-CDS-S-firma_M_contig901:3279..3312Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig901 3280..3312 -
1697105123.4345562-CDS-S-firma_M_contig901:3279..33121697105123.4345562-CDS-S-firma_M_contig901:3279..3312Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig901 3280..3312 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828723.6157467-UTR-S-firma_M_contig901:3312..33441622828723.6157467-UTR-S-firma_M_contig901:3312..3344Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig901 3313..3344 -
1697105123.4441922-UTR-S-firma_M_contig901:3312..33441697105123.4441922-UTR-S-firma_M_contig901:3312..3344Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig901 3313..3344 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig901.19943.1

>prot_S-firma_M_contig901.19943.1 ID=prot_S-firma_M_contig901.19943.1|Name=mRNA_S-firma_M_contig901.19943.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=186bp
MATVVPSAASLPHQAPPPRGARPRLQPAGSAPMRALQILRETQPLPTRRQ
SVPTTFPPPRGPPPPLPLFSKVAAAAQPQPGKPTPNANSPLVGKPPPPST
HHPLVMLDPLAGRRRHSTGNVPGGGTPGTPMRPPPPRGPRPPPASGETAA
TTAIPAGPSLATANNSLQAVRHDAARRRSSDLRAPP
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mRNA from alignment at S-firma_M_contig901:2466..3344-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig901.19943.1 ID=mRNA_S-firma_M_contig901.19943.1|Name=mRNA_S-firma_M_contig901.19943.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=879bp|location=Sequence derived from alignment at S-firma_M_contig901:2466..3344- (Sphaerotrichia firma Sfir_13m male)
GCTTTAGTTCAGTCGGCACACAGAGGGTGAAAATGGCTACGGTCGTTCCT
TCGGCGGCGTCGCTGGTAAGTTGCGTGGTGCTTCGCATCGCCCAACAGAT
CCCTTGCGTGTCTTGGATACGACGTGGTTTACTCAGTCACTCAAGTAACC
TGTGGGTCGCAACCTGTTCACAATGTGAAGCATGTACATGCAGTATGGAA
TAAAAGTCTTGTTACGAGGCAGCACTCCACCTTCAAAGCTCAGCCAACAC
ATTGTTCCTCCACCTCTAATTACTGCAGTTTTTGCTGATAGGTGAACAAA
TTGCGTGCTACAGCAGTATTTCGCCACTTGCTGTTTGTCAATATTATGTT
GTAGCCGCATCAGGCACCACCGCCTCGCGGAGCACGGCCAAGACTCCAGC
CCGCAGGATCTGCACCCATGCGAGCCCTACAAATACTGCGAGAGACCCAG
CCGTTACCCACCCGCCGCCAGAGCGTGCCTACCACGTTTCCTCCTCCAAG
GGGGCCGCCACCACCCCTACCGCTGTTCTCAAAAGTTGCTGCAGCAGCAC
AGCCGCAGCCGGGGAAGCCAACGCCGAACGCCAACTCACCCCTCGTCGGA
AAGCCTCCGCCGCCTTCAACACACCACCCACTCGTGATGCTCGACCCACT
AGCGGGGAGACGGCGGCACAGTACGGGGAACGTTCCCGGCGGGGGAACGC
CCGGTACCCCCATGCGTCCACCACCACCGCGAGGTCCACGGCCACCCCCC
GCATCTGGCGAGACCGCCGCGACGACGGCGATTCCAGCGGGGCCTTCTCT
CGCGACGGCGAACAACTCTCTGCAGGCCGTGCGCCACGACGCTGCTCGGA
GAAGGTCGAGCGATCTCAGGGCTCCCCCA
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Coding sequence (CDS) from alignment at S-firma_M_contig901:2466..3344-

>mRNA_S-firma_M_contig901.19943.1 ID=mRNA_S-firma_M_contig901.19943.1|Name=mRNA_S-firma_M_contig901.19943.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1116bp|location=Sequence derived from alignment at S-firma_M_contig901:2466..3344- (Sphaerotrichia firma Sfir_13m male)
ATGGCTACGGTCGTTCCTTCGGCGGCGTCGCTGATGGCTACGGTCGTTCC
TTCGGCGGCGTCGCTGCCGCATCAGGCACCACCGCCTCGCGGAGCACGGC
CAAGACTCCAGCCCGCAGGATCTGCACCCATGCGAGCCCTACAAATACTG
CGAGAGACCCAGCCGTTACCCACCCGCCGCCAGAGCGTGCCTACCACGTT
TCCTCCTCCAAGGGGGCCGCCACCACCCCTACCGCTGTTCTCAAAAGTTG
CTGCAGCAGCACAGCCGCAGCCGGGGAAGCCAACGCCGAACGCCAACTCA
CCCCTCGTCGGAAAGCCTCCGCCGCCTTCAACACACCACCCACTCGTGAT
GCTCGACCCACTAGCGGGGAGACGGCGGCACAGTACGGGGAACGTTCCCG
GCGGGGGAACGCCCGGTACCCCCATGCGTCCACCACCACCGCGAGGTCCA
CGGCCACCCCCCGCATCTGGCGAGACCGCCGCGACGACGGCGATTCCAGC
GGGGCCTTCTCTCGCGACGGCGAACAACTCTCTGCAGGCCGTGCGCCACG
ACGCTGCTCGGAGAAGGTCGAGCGATCTCAGGGCTCCCCCACCGCATCAG
GCACCACCGCCTCGCGGAGCACGGCCAAGACTCCAGCCCGCAGGATCTGC
ACCCATGCGAGCCCTACAAATACTGCGAGAGACCCAGCCGTTACCCACCC
GCCGCCAGAGCGTGCCTACCACGTTTCCTCCTCCAAGGGGGCCGCCACCA
CCCCTACCGCTGTTCTCAAAAGTTGCTGCAGCAGCACAGCCGCAGCCGGG
GAAGCCAACGCCGAACGCCAACTCACCCCTCGTCGGAAAGCCTCCGCCGC
CTTCAACACACCACCCACTCGTGATGCTCGACCCACTAGCGGGGAGACGG
CGGCACAGTACGGGGAACGTTCCCGGCGGGGGAACGCCCGGTACCCCCAT
GCGTCCACCACCACCGCGAGGTCCACGGCCACCCCCCGCATCTGGCGAGA
CCGCCGCGACGACGGCGATTCCAGCGGGGCCTTCTCTCGCGACGGCGAAC
AACTCTCTGCAGGCCGTGCGCCACGACGCTGCTCGGAGAAGGTCGAGCGA
TCTCAGGGCTCCCCCA
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