mRNA_S-firma_M_contig901.19942.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig901.19942.1
Unique NamemRNA_S-firma_M_contig901.19942.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
BLAST of mRNA_S-firma_M_contig901.19942.1 vs. uniprot
Match: A0A6H5JPE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPE5_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 1.820e-49
Identity = 92/137 (67.15%), Postives = 97/137 (70.80%), Query Frame = 1
Query:    1 MGVTKQKDGDVGGAVECYERAARDGHAKAQHNLAAIFEKGFAGAPKNDVEAVRLFRLAAEQGLAESSYSLAMHLKFGLGERQDDAQCVYYLEQASEQASGLAKAMFNLGLMYEKRRGISPEAPEADLLEATRECYEA 411
            MGVTKQK+G+  GAVECY RAARDGHAKAQHNLAAIFEKG  G  KND EAVRLFRLAAEQGLAESSYSLAMHLKFGLG   +                           MYEKRRG+S +APE DLLEATRECYEA
Sbjct:    1 MGVTKQKEGNAVGAVECYGRAARDGHAKAQHNLAAIFEKGMPGVLKNDAEAVRLFRLAAEQGLAESSYSLAMHLKFGLG--IEXXXXXXXXXXXXXXXXXXXXXXXXXXXMYEKRRGVSSDAPEEDLLEATRECYEA 135          
BLAST of mRNA_S-firma_M_contig901.19942.1 vs. uniprot
Match: D7FGQ6_ECTSI (Sel1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGQ6_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 5.860e-46
Identity = 91/137 (66.42%), Postives = 97/137 (70.80%), Query Frame = 1
Query:    1 MGVTKQKDGDVGGAVECYERAARDGHAKAQHNLAAIFEKGFAGAPKNDVEAVRLFRLAAEQGLAESSYSLAMHLKFGLGERQDDAQCVYYLEQASEQASGLAKAMFNLGLMYEKRRGISPEAPEADLLEATRECYEA 411
            MGVTKQK+G++ GAVECY RAARDGHAKAQHNLAAIFEKG  G  K+D EAVRLFRLAAEQGLAESSYSLAMHLKFGLG                               MYEKRRG+S +APE DLLEATRECYEA
Sbjct:    1 MGVTKQKEGNIVGAVECYGRAARDGHAKAQHNLAAIFEKGMPGVLKDDAEAVRLFRLAAEQGLAESSYSLAMHLKFGLGIXXXXXXXXXXXXXXXX--XXXXXXXXXXXXMYEKRRGVSSDAPEGDLLEATRECYEA 135          
BLAST of mRNA_S-firma_M_contig901.19942.1 vs. uniprot
Match: A0A835Z1C8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1C8_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.480e-25
Identity = 68/145 (46.90%), Postives = 81/145 (55.86%), Query Frame = 1
Query:    1 MGVTKQKDGDVGGAVECYERAARDGHAKAQHNLAAIFEKGFAGAPKNDVEAVRLFRLAAEQGLAESSYSLAMHLKFGLGERQDDAQCVYYLEQASEQASGLAKAMFNLGLMYEKRRGISPEAPEADLLEATRECYEAAAEAGVTK 435
             GVT Q+ G+   A   Y RAA  GH KAQHNLAA++EKG +G  K+D EAVRLF LAAE GLAESSYSLAMH K GLG   +                                RGI+P+   A+ L+A +ECY +AA AGV K
Sbjct:  440 QGVTHQRHGEQAAAAAMYARAAEMGHPKAQHNLAAMYEKGVSGMAKDDREAVRLFTLAAEAGLAESSYSLAMHFKLGLG--CEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGIAPDVLAAEALDAAKECYRSAAMAGVPK 582          
BLAST of mRNA_S-firma_M_contig901.19942.1 vs. uniprot
Match: A0A1B3SNZ0_9ZZZZ (SEL-1-like domain containing protein n=1 Tax=uncultured organism TaxID=155900 RepID=A0A1B3SNZ0_9ZZZZ)

HSP 1 Score: 55.5 bits (132), Expect = 2.470e-7
Identity = 29/61 (47.54%), Postives = 40/61 (65.57%), Query Frame = 1
Query:   25 GDVGGAVECYERAARDGHAKAQHNLAAIFEKGFAGAPKNDVEAVRLFRLAAEQGLAESSYS 207
            GD   A+    RAA+ G   AQ+NL  ++  G+ G P+ND EAV+ +RLAAEQGLA + Y+
Sbjct:   35 GDYKRALPACSRAAKQGDVYAQYNLGVMYANGY-GVPENDREAVKWYRLAAEQGLAAAQYN 94          
BLAST of mRNA_S-firma_M_contig901.19942.1 vs. uniprot
Match: A0A431NDQ2_9PSEU (Uncharacterized protein n=1 Tax=Pseudonocardiaceae bacterium TaxID=1873463 RepID=A0A431NDQ2_9PSEU)

HSP 1 Score: 58.5 bits (140), Expect = 3.350e-7
Identity = 45/128 (35.16%), Postives = 69/128 (53.91%), Query Frame = 1
Query:    1 MGVTKQKDGDVGGAVECYERAARDGHAKAQHNLAAI-FEKGFAGAPKNDVEAVRLFRLAAEQGL--AESSYSLAMHLKFGLGERQDDAQCVYYLEQASEQASGLAKAMFNLGLMYEKRRGISPEAPEA 375
            +G   QK GD+  A+E Y++AA  G+A AQ++LAAI   KG     K+   A++   LAAEQ    A++   L    +  L   +D A+ +Y+  +AS+Q  G A+A F + + Y K  G+     EA
Sbjct:   83 LGRVFQKTGDLRTAIEYYQKAADQGYAYAQYDLAAIVLGKGGGNIEKDTPSALKYLTLAAEQNFIPAQNMLGLVYDDEESL---RDYAKAIYWFNKASDQ--GDAEAKFYIAMHYSKGWGVQKSDSEA 205          
BLAST of mRNA_S-firma_M_contig901.19942.1 vs. uniprot
Match: A0A3D2Z8G4_9BACT (Uncharacterized protein n=1 Tax=Candidatus Latescibacteria bacterium TaxID=2053570 RepID=A0A3D2Z8G4_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 4.220e-7
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 1
Query:   64 ARDGHAKAQHNLAAIFEKGFAGAPKNDVEAVRLFRLAAEQGLAESSYSLAMHLKFGLGERQDD 252
            A  G A+AQ +L +I+E G  G P++  EAVR +R+AAEQG   +SY LA+    G G  QDD
Sbjct:   36 AEQGDAEAQFDLGSIYEYGIGGVPQDQAEAVRWWRMAAEQGNLLASYGLALQYFNGNGVPQDD 98          
BLAST of mRNA_S-firma_M_contig901.19942.1 vs. uniprot
Match: A0A2P4PSZ5_RHIID (Kinase-like domain-containing protein n=11 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2P4PSZ5_RHIID)

HSP 1 Score: 54.7 bits (130), Expect = 7.700e-6
Identity = 37/113 (32.74%), Postives = 61/113 (53.98%), Query Frame = 1
Query:    4 GVTKQKDGDVGGAVECYERAARDGHAKAQHNLAAIFEKGFAGAPKNDVEAVRLFRLAAEQGLAESSYSLAMHLKFGLGERQDDAQCVYYLEQASEQASGLAKAMFNLGLMYEK 342
            G+   K+ D   A +C+E  A +G A A+H +     +G     KN  EA RLF+ AA++G+ ++    A  L+  LG++++  + + YL  A++   G + A FNLG  Y K
Sbjct:  474 GIKAHKNRDYEKAWKCFEYHALNGSAYAKHWMGYYLWEG-RSVEKNQEEAARLFKEAADKGIHDAQLRYAFTLQESLGKKKEREEFIKYLTLAAD--GGNSTAQFNLGDAYIK 583          
BLAST of mRNA_S-firma_M_contig901.19942.1 vs. uniprot
Match: A0A1W9KK44_9PROT (Uncharacterized protein n=2 Tax=unclassified Proteobacteria TaxID=81684 RepID=A0A1W9KK44_9PROT)

HSP 1 Score: 54.7 bits (130), Expect = 8.240e-6
Identity = 31/87 (35.63%), Postives = 48/87 (55.17%), Query Frame = 1
Query:   28 DVGGAVECYERAARDGHAKAQHNLAAIFEKGFAGAPKNDVEAVRLFRLAAEQGLAESSYSLAMHLKFGLGERQDDAQCVYYLEQASE 288
            D+  AV  YE+ A  G+ K+ HNLA ++  G A    +   A  LF  AAE GL +S ++LA+ L  GLG +Q+  +   +   A++
Sbjct:  965 DIAQAVSAYEKGAALGNRKSMHNLATLYAAGIATGNPDYQRAFPLFEQAAELGLVDSQFNLAVLLVNGLGAKQNLGEAYKWFTVAAQ 1051          
BLAST of mRNA_S-firma_M_contig901.19942.1 vs. uniprot
Match: A0A015IFR7_RHIIW (Non-specific serine/threonine protein kinase n=11 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015IFR7_RHIIW)

HSP 1 Score: 54.3 bits (129), Expect = 1.070e-5
Identity = 36/111 (32.43%), Postives = 60/111 (54.05%), Query Frame = 1
Query:    4 GVTKQKDGDVGGAVECYERAARDGHAKAQHNLAAIFEKGFAGAPKNDVEAVRLFRLAAEQGLAESSYSLAMHLKFGLGERQDDAQCVYYLEQASEQASGLAKAMFNLGLMY 336
            G+   K+ D   A +C+E  A +G A A+H +     +G     KN  EA RLF+ AA++G+ ++    A  L+  LG++++  + + YL  A++   G + A FNLG  Y
Sbjct:  573 GIKAHKNRDYDKAWKCFEYHALNGSAYAKHWMGYYLWEG-RSVEKNQEEAARLFKEAADKGIHDAQLRYAFTLQKSLGKKKERDEFIKYLTLAAD--GGNSTAQFNLGDAY 680          
BLAST of mRNA_S-firma_M_contig901.19942.1 vs. uniprot
Match: A0A2N0PDR4_9GLOM (Kinase-like protein n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2N0PDR4_9GLOM)

HSP 1 Score: 53.9 bits (128), Expect = 1.390e-5
Identity = 37/113 (32.74%), Postives = 61/113 (53.98%), Query Frame = 1
Query:    4 GVTKQKDGDVGGAVECYERAARDGHAKAQHNLAAIFEKGFAGAPKNDVEAVRLFRLAAEQGLAESSYSLAMHLKFGLGERQDDAQCVYYLEQASEQASGLAKAMFNLGLMYEK 342
            G+   K+ D   A +C+E  A +G A A+H +   +  G     KN  EA RLF+ AA++G+ ++    A  L+  LG++++  + + YL  A++   G + A FNLG  Y K
Sbjct:  405 GINAHKNRDYEKAWKCFEYHALNGSACAKHWM-GYYLWGGRSVEKNQEEAARLFKEAADKGIHDAQLRYAFTLQKSLGKKKERDEFIKYLTLAAD--GGNSTAQFNLGDAYIK 514          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig901.19942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5JPE5_9PHAE1.820e-4967.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FGQ6_ECTSI5.860e-4666.42Sel1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835Z1C8_9STRA1.480e-2546.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1B3SNZ0_9ZZZZ2.470e-747.54SEL-1-like domain containing protein n=1 Tax=uncul... [more]
A0A431NDQ2_9PSEU3.350e-735.16Uncharacterized protein n=1 Tax=Pseudonocardiaceae... [more]
A0A3D2Z8G4_9BACT4.220e-747.62Uncharacterized protein n=1 Tax=Candidatus Latesci... [more]
A0A2P4PSZ5_RHIID7.700e-632.74Kinase-like domain-containing protein n=11 Tax=Rhi... [more]
A0A1W9KK44_9PROT8.240e-635.63Uncharacterized protein n=2 Tax=unclassified Prote... [more]
A0A015IFR7_RHIIW1.070e-532.43Non-specific serine/threonine protein kinase n=11 ... [more]
A0A2N0PDR4_9GLOM1.390e-532.74Kinase-like protein n=2 Tax=Rhizophagus irregulari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig901contigS-firma_M_contig901:224..1604 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.4
Seed ortholog evalue1e-38
Seed eggNOG ortholog2880.D7FGQ6
KEGG koko:K14026
KEGG Pathwayko04141,map04141
KEGG ModuleM00403
EggNOG free text desc.ERAD pathway
EggNOG OGsCOG0790@1,KOG1550@2759
Ec32 ortholog descriptionSel1-like
Ec32 orthologEc-04_001250.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Hectar predicted targeting categoryother localisation
Exons3
Model size444
Cds size444
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig901.19942.1prot_S-firma_M_contig901.19942.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig901 224..1604 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828723.6916492-CDS-S-firma_M_contig901:223..3701622828723.6916492-CDS-S-firma_M_contig901:223..370Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig901 224..370 -
1697105123.4625528-CDS-S-firma_M_contig901:223..3701697105123.4625528-CDS-S-firma_M_contig901:223..370Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig901 224..370 -
1622828723.7049854-CDS-S-firma_M_contig901:1081..11351622828723.7049854-CDS-S-firma_M_contig901:1081..1135Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig901 1082..1135 -
1697105123.4780674-CDS-S-firma_M_contig901:1081..11351697105123.4780674-CDS-S-firma_M_contig901:1081..1135Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig901 1082..1135 -
1622828723.7182608-CDS-S-firma_M_contig901:1361..16041622828723.7182608-CDS-S-firma_M_contig901:1361..1604Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig901 1362..1604 -
1697105123.4878688-CDS-S-firma_M_contig901:1361..16041697105123.4878688-CDS-S-firma_M_contig901:1361..1604Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig901 1362..1604 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig901.19942.1

>prot_S-firma_M_contig901.19942.1 ID=prot_S-firma_M_contig901.19942.1|Name=mRNA_S-firma_M_contig901.19942.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=148bp
MGVTKQKDGDVGGAVECYERAARDGHAKAQHNLAAIFEKGFAGAPKNDVE
AVRLFRLAAEQGLAESSYSLAMHLKFGLGERQDDAQCVYYLEQASEQASG
LAKAMFNLGLMYEKRRGISPEAPEADLLEATRECYEAAAEAGVTKAMV
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mRNA from alignment at S-firma_M_contig901:224..1604-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig901.19942.1 ID=mRNA_S-firma_M_contig901.19942.1|Name=mRNA_S-firma_M_contig901.19942.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1381bp|location=Sequence derived from alignment at S-firma_M_contig901:224..1604- (Sphaerotrichia firma Sfir_13m male)
ATGGGGGTCACCAAGCAGAAGGACGGGGACGTCGGGGGCGCCGTGGAGTG CTACGAGCGCGCGGCGAGAGACGGGCACGCCAAGGCGCAGCACAACCTGG CCGCCATCTTCGAGAAGGGGTTCGCGGGTGCCCCCAAGAACGACGTCGAG GCCGTGCGGCTGTTCCGCCTTGCGGCGGAGCAAGGCCTGGCTGAGTCGTC CTACAGCCTTGCGATGCACCTCAAGTTTGGGCTCGGTGAGAGAGTTCGGT TGATCTTTCGTGTGCGAACATACGGTATCAGCACGCGAGTATTTTCGCAA AGTCTTTGCTGAACTCTTAATCCCTTGCCGCGGCTGAGAGGCACCGTGTT CTCTCGTGCGGGGCATTCGGCCGTGCCCGAGTGTCAGCCGTATTCGTTGG GACCCCCGTCTCTCGTTTCTCTCACGCTCTCAGCTGTCGTCGCTAACATG CATATCTGCAGGAACCGAGCAAGATGACGCTCAGTGCGTGTACTACCTGG AACAAGCCAGCGAGCAGGCGAGTGTTGGTTTTCTCGACAAGCTTGTGTCA TTTGCGGCGTCAAACGACACAGAGGGTGCCCTCTTCCCTGAAGCGAGCTC CATACATGTAGCTAACGTTTTCGAGAACAAGGACAAGCAAGGTACAACTT GCAGCTCTTCTCGTCGCCGCCCACGCTCTTTTCTCTCCTTTGCCGGACGT TCAAGGTTGTGGAAAAGCGCAAGCTGCTTGATGTAACCTCGATCGCGGCG GGATGGCGTGAGCAGTTTCTCTTTGATGTCATCGAAGCACACGTCGACGT ACGCCTTATGACACTAGCCTTATCTTGTGTGCGGAGCTTGGATTCCAACC GCCATTGATGGGCTAACCCTCCGCAAACACTCGTTTATTCGAGGCCGGAC ACCCTTTACCTTGCAGACGACGGTGTTTTCGTCGTTGTGCCAAAGGTAAT TTTTTTTCTCCTCCGTCACGACCGGGCCGGTTTGATCCTCTTCTCGCCGC CCCGGTTGGAAAGTCTGGAAATGCCAACCGTAGTCGATTAGTGGGTATCA TCTCTCTCTCTGTCATTATCTCTTTCTCTGTGTGTGTGTATGTGTGTGTT CCCCCCTCTCTCTCGCTCTCGACGGTTTGTGGCCGCCGAATAGTAAGCCT GCTGTTCTGGCTGCTGCACCAATTTCTTTCTCTCGACTTTCCCCCCCCGC GCACCCCAACCCCGCCAACCTTTATCCTTCGCAGGGTCTTGCGAAGGCAA TGTTTAACCTAGGGCTCATGTACGAGAAACGACGGGGCATCAGCCCAGAG GCGCCGGAAGCGGACCTGCTGGAGGCGACCCGGGAGTGCTACGAAGCCGC CGCCGAGGCAGGCGTCACCAAGGCGATGGTA
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Coding sequence (CDS) from alignment at S-firma_M_contig901:224..1604-

>mRNA_S-firma_M_contig901.19942.1 ID=mRNA_S-firma_M_contig901.19942.1|Name=mRNA_S-firma_M_contig901.19942.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=888bp|location=Sequence derived from alignment at S-firma_M_contig901:224..1604- (Sphaerotrichia firma Sfir_13m male)
ATGGGGGTCACCAAGCAGAAGGACGGGGACGTCGGGGGCGCCGTGGAGTG
CTACGAGCGCGCGGCGAGAGACGGGCACGCCAAGGCGCAGCACAACCTGG
CCGCCATCTTCGAGAAGGGGTTCGCGGGTGCCCCCAAGAACGACGTCGAG
GCCGTGCGGCTGTTCCGCCTTGCGGCGGAGCAAGGCCTGGCTGAGTCGTC
CTACAGCCTTGCGATGCACCTCAAGTTTGGGCTCGGTGAGAGAATGGGGG
TCACCAAGCAGAAGGACGGGGACGTCGGGGGCGCCGTGGAGTGCTACGAG
CGCGCGGCGAGAGACGGGCACGCCAAGGCGCAGCACAACCTGGCCGCCAT
CTTCGAGAAGGGGTTCGCGGGTGCCCCCAAGAACGACGTCGAGGCCGTGC
GGCTGTTCCGCCTTGCGGCGGAGCAAGGCCTGGCTGAGTCGTCCTACAGC
CTTGCGATGCACCTCAAGTTTGGGCTCGGTGAGAGACAAGATGACGCTCA
GTGCGTGTACTACCTGGAACAAGCCAGCGAGCAGGCGAGTCAAGATGACG
CTCAGTGCGTGTACTACCTGGAACAAGCCAGCGAGCAGGCGAGTGGTCTT
GCGAAGGCAATGTTTAACCTAGGGCTCATGTACGAGAAACGACGGGGCAT
CAGCCCAGAGGCGCCGGAAGCGGACCTGCTGGAGGCGACCCGGGAGTGCT
ACGAAGCCGCCGCCGAGGCAGGCGTCACCAAGGCGATGGTAGGTCTTGCG
AAGGCAATGTTTAACCTAGGGCTCATGTACGAGAAACGACGGGGCATCAG
CCCAGAGGCGCCGGAAGCGGACCTGCTGGAGGCGACCCGGGAGTGCTACG
AAGCCGCCGCCGAGGCAGGCGTCACCAAGGCGATGGTA
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