mRNA_S-firma_M_contig90.19935.1 (mRNA) Sphaerotrichia firma Sfir_13m male
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Overview
Homology
BLAST of mRNA_S-firma_M_contig90.19935.1 vs. uniprot
Match: D7FW92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW92_ECTSI) HSP 1 Score: 428 bits (1100), Expect = 4.160e-127 Identity = 383/972 (39.40%), Postives = 452/972 (46.50%), Query Frame = 1
Query: 91 VLSVSHRG----KVEKV-VLAPGVSAREVANCLGALFKIPAHERAVGMAATTGERDVVIPLSAVCRYPSLIFREHEKLDSAFRIVTKDADRDDELLFPISALTPPPPPGRSHLPPTWASSLPEVRVSTVEAVALPELVRSGELTPGQGAAAVEMMREEDPVVFAACRVXXXXXXXXXXXXXXXXXXXXXXXSRNRGWTEEAKSSFASMLKLVLCGRERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGEKCRDSLQVPETFQSDTIALADVALVTGKITKKAYVRALFKTVTLDHGLVSAYRADLDQNQHQQWQGGGGGEVPQATLKALTVGEYEPVATT---AQQSQSSPSVLGLWGAEAAAXXXXXXXXEAASSPVHENGSEEDLLAREASLRDEFLFQALSLVEGGNDGLSARHRAIVHHAISVGHPWVSAIYDECKETGDVRGLMQNLQCLPALLERDQAAAFAANISQPPPPGEADSPFWPRHQQQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVSAAAKHSGSRIRDVPPLSAVTVKASKPEAAASPSLASEEATPIAAXXXXXXXXXXDSTQTQVDFGKAAEGNSAAGTPSVASNVDGPAAKTPAFEAVVAQLCRVIAGCSQLLVLKGIIGEREEQALSAMSNRGSPVLLAAVEAYGSNQDLEDLLDTLKVCAATEVSLTTNGSATTTATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDDREVGGLTENSNGDGDEDGSTGRQERYADDADGDETLQAGDAARNGASATPGDDGRRRGSQASSTTVRTAAVGARAQELAAARFAGMRSAAEAXXXXXXXXXXXXXXXXXXXXXXSSMSGVASSFAKGPEDEEPSGDKRLRQDVSQLVAVMFKQKMLTDRQRLFLLAQVGRCITKVARKRYREYLESGNSKELYTCLMALSTPSKNKANK 2982
V+S+ H + EK+ +LA A+E+A LGALF+IP+HER VG+A+ TG V IPLSA CRYP+LIFRE E+L FRIVTKDA +DE+LFPISALTPPP PG S LPPTWASS PE+RV+T E VA+PELV +G LT QG VE +R EDPVVFAACRV R R W+ EAK SFASM+K+VL G+ XXE + CR S +VPE+FQ D +ALADVALVTGKI+K+AYVRAL K VTLD LVSAY + Q + + +G + +A ++A + A QQ +++ +V G+ A AA A+ EDL+AREA LRD+FL QALSL+E G GLSA+HRA+V AISVGHPWVSAIYDECKETGDVRGLM GEA GN PAF VV QLCRV+AGCSQLL L+G+IGEREE+ L MSNRGSPVLLAAVEAYG+NQDLEDLLDTL+ A E+SLT XXXXXXXXXXXX X XXXXXXXXXXXXX +R+G G RAQ + GV+S E +EPSGD+RLRQDVSQLVAVM KQ MLTDRQRLFLLAQVGR IT+ R+++ +YL +GNSKELYT LMALS P K
Sbjct: 5 VVSICHHDGRSTRTEKLRLLAERNDAQEMALLLGALFEIPSHERVVGLASVTGSCGV-IPLSASCRYPNLIFREEERLGRVFRIVTKDAASEDEVLFPISALTPPPSPGLSRLPPTWASSPPELRVNTAETVAIPELVSTGALTRQQGVLVVERLRAEDPVVFAACRVAGAAGVSLGSSTPAG--------ERRREWSGEAKRSFASMVKVVLGGK--VGRGDGGSSVGEADGGMPRRGGKGRGRRRAWAEEXXEQQLCRRSQEVPESFQVDALALADVALVTGKISKQAYVRALHKVVTLDSSLVSAYLGERKQGRQEDGEG-----MLEAVVRAFGPEQQGRTADNDDPRQQPRAAAAVGGVKAAGAATTDGSLGQGRMAA---------EDLVAREAELRDDFLRQALSLIEEGGAGLSAQHRAVVEKAISVGHPWVSAIYDECKETGDVRGLM----------------------------GEA------------------------------------------------------------------------------------------------------------------------------GN-------------------PAFHMVVGQLCRVVAGCSQLLRLRGVIGEREERTLKTMSNRGSPVLLAAVEAYGANQDLEDLLDTLQTAAEIELSLTAAXXXXXXXXXXXXXXXXXXXXXDPXQQRRALPHQXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------XXXXXXVSRDG--------------------------GGRAQ---------------------------------------ASVGVSSD-----EGKEPSGDRRLRQDVSQLVAVMAKQGMLTDRQRLFLLAQVGRRITRTTREKHAQYLATGNSKELYTVLMALSMPPPRNKKK 685
BLAST of mRNA_S-firma_M_contig90.19935.1 vs. uniprot
Match: A0A6H5L3A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3A7_9PHAE) HSP 1 Score: 194 bits (493), Expect = 4.180e-50 Identity = 180/332 (54.22%), Postives = 205/332 (61.75%), Query Frame = 1
Query: 1987 VVAQLCRVIAGCSQLLVLKGIIGEREEQALSAMSNRGSPVLLAAVEAYGSNQDLEDLLDTLKVCAATEVSLTTNGSATTTATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDDREVGGLTENSNGDGDEDGSTGRQERYADDADGDETLQAGDAARNGASATPGDDGRRRGSQASSTTVRTAAVGARAQELAAARFAGMRSAAEAXXXXXXXXXXXXXXXXXXXXXXSSMSGVASSFAKGPEDEEPSGDKRLRQDVSQLVAVMFKQKMLTDRQRLFLLAQVGRCITKVARKRYREYLESGNSKELYTCLMALSTPSKNKANK 2982
VV QLCRV+AGCSQLL L+G+IGEREE+AL MSNRGSPVLLAAVEAYG+NQDLEDLLDTL+ A E+SLT +A XXXXXXXXXXXXXX R+ GG + S G DG + R G+ AT R ++ + AAVGARAQEL ARFAGM+SAAEA XXXXXXXXXXXXXXXXXXXXX EPSGD+RLRQDVSQLVAVM KQ MLTDRQRLFLLAQ+GR IT+ R+++ +YL +GNSKELY L+ALS P K K
Sbjct: 2 VVGQLCRVVAGCSQLLRLRGVIGEREERALKTMSNRGSPVLLAAVEAYGANQDLEDLLDTLQTAAEIELSLTAAAAAVPETRRADPXXXXXXXXXXXXXXLPSGVGAGGGRGGLDLGCGSGVSRDGGGRAQASVGVS-SDGESXXXGR-------------------GSDATGESIWSRPAAEVKTPAAAAAAVGARAQELMKARFAGMKSAAEAKXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXEPSGDRRLRQDVSQLVAVMAKQGMLTDRQRLFLLAQMGRRITRTTREKHAQYLATGNSKELYAVLIALSMPLPRKKKK 312
BLAST of mRNA_S-firma_M_contig90.19935.1 vs. uniprot
Match: A0A6H5L1T6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1T6_9PHAE) HSP 1 Score: 180 bits (456), Expect = 1.840e-47 Identity = 111/221 (50.23%), Postives = 128/221 (57.92%), Query Frame = 1
Query: 271 RYPSLIFREHEKLDSAFRIVTKDADRDDELLFPISALTPPPPPGRSHLPPTWASSLPEVRVSTVEAVALPELVRSGELTPGQGAAAVEMMREEDPVVFAACRVXXXXXXXXXXXXXXXXXXXXXXXSRNRGWTEEAKSSFASMLKLVLCGRERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGEKCRDSLQVPETFQSDTIALADVALVTGKI 933
RYP+LIFRE E+L FRIVTKDA +DE+LFPISALT PP PG S LPPTWASS PE+RVST E VA+PELV SG LT QG VEM+R EDPVVFAACRV R R W+ EAK +FASM+K+VL G+ E ++CR S +VPE+FQ D IALADVALVTGK+
Sbjct: 13 RYPNLIFREEERLGRIFRIVTKDAASEDEVLFPISALTLPPSPGLSRLPPTWASSPPELRVSTAETVAVPELVSSGALTRQQGMLVVEMLRAEDPVVFAACRVAGAAGVTLGSSTPAG--------ERRREWSGEAKRNFASMVKVVLGGK---VGRGDVGSSVGEADGGTLRRGGKGRARGRAWAGEKEQQRCRGSQEVPESFQMDAIALADVALVTGKV 222 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig90.19935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_M_contig90.19935.1 >prot_S-firma_M_contig90.19935.1 ID=prot_S-firma_M_contig90.19935.1|Name=mRNA_S-firma_M_contig90.19935.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=1054bp MHVLSVSHRGKVEKVVLAPGVSAREVANCLGALFKIPAHERAVGMAATTGback to top mRNA from alignment at S-firma_M_contig90:34266..43790- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_M_contig90.19935.1 ID=mRNA_S-firma_M_contig90.19935.1|Name=mRNA_S-firma_M_contig90.19935.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=9525bp|location=Sequence derived from alignment at S-firma_M_contig90:34266..43790- (Sphaerotrichia firma Sfir_13m male)back to top Coding sequence (CDS) from alignment at S-firma_M_contig90:34266..43790- >mRNA_S-firma_M_contig90.19935.1 ID=mRNA_S-firma_M_contig90.19935.1|Name=mRNA_S-firma_M_contig90.19935.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=6324bp|location=Sequence derived from alignment at S-firma_M_contig90:34266..43790- (Sphaerotrichia firma Sfir_13m male)back to top |