mRNA_S-firma_M_contig9.19929.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9.19929.1
Unique NamemRNA_S-firma_M_contig9.19929.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9.19929.1 vs. uniprot
Match: A0A6H5JVG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVG0_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 1.720e-36
Identity = 73/114 (64.04%), Postives = 84/114 (73.68%), Query Frame = 3 
Query:  516 KPILVAAIATVRVEPVPDGVIKKQGIDGNGETVHWQVNEVLSKNHKSVYEHLHKYFNETIWLVGYRFQFGPGRFAGKLLEKNIADITEKDAVGAFIPYLDHPTNGPGFDDNGDE 857
            KPI  AAI  V  EPVPDG    +G D   ETV WQVN VL +  KSVYEH  ++   TIW  GYRFQFGPGR A KL +KN++DITE+DAV AFIPYLD+PTNGPGFDD+G+E
Sbjct:    2 KPIAQAAIMAVCHEPVPDGETD-EGFDEMLETVEWQVNCVLEEKGKSVYEHAQRFIVATIWETGYRFQFGPGRIASKL-DKNVSDITEQDAVNAFIPYLDNPTNGPGFDDDGNE 113
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9.19929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JVG0_9PHAE1.720e-3664.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9contigS-firma_M_contig9:85344..88183 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_005010.1
Exons4
Model size1223
Cds size678
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9.19929.1prot_S-firma_M_contig9.19929.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9 85479..87773 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828720.9093072-UTR-S-firma_M_contig9:85343..854781622828720.9093072-UTR-S-firma_M_contig9:85343..85478Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9 85344..85478 -
1697105121.949228-UTR-S-firma_M_contig9:85343..854781697105121.949228-UTR-S-firma_M_contig9:85343..85478Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9 85344..85478 -
1622828720.9741445-UTR-S-firma_M_contig9:87773..881831622828720.9741445-UTR-S-firma_M_contig9:87773..88183Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9 87774..88183 -
1697105122.0031555-UTR-S-firma_M_contig9:87773..881831697105122.0031555-UTR-S-firma_M_contig9:87773..88183Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9 87774..88183 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828720.9206436-CDS-S-firma_M_contig9:85478..857501622828720.9206436-CDS-S-firma_M_contig9:85478..85750Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9 85479..85750 -
1697105121.9601784-CDS-S-firma_M_contig9:85478..857501697105121.9601784-CDS-S-firma_M_contig9:85478..85750Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9 85479..85750 -
1622828720.9340277-CDS-S-firma_M_contig9:86581..867061622828720.9340277-CDS-S-firma_M_contig9:86581..86706Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9 86582..86706 -
1697105121.9708526-CDS-S-firma_M_contig9:86581..867061697105121.9708526-CDS-S-firma_M_contig9:86581..86706Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9 86582..86706 -
1622828720.9477599-CDS-S-firma_M_contig9:87054..872361622828720.9477599-CDS-S-firma_M_contig9:87054..87236Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9 87055..87236 -
1697105121.9809349-CDS-S-firma_M_contig9:87054..872361697105121.9809349-CDS-S-firma_M_contig9:87054..87236Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9 87055..87236 -
1622828720.9627907-CDS-S-firma_M_contig9:87674..877731622828720.9627907-CDS-S-firma_M_contig9:87674..87773Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9 87675..87773 -
1697105121.9937553-CDS-S-firma_M_contig9:87674..877731697105121.9937553-CDS-S-firma_M_contig9:87674..87773Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9 87675..87773 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9.19929.1

>prot_S-firma_M_contig9.19929.1 ID=prot_S-firma_M_contig9.19929.1|Name=mRNA_S-firma_M_contig9.19929.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=226bp
MMMSGLTTACPNFRPRAEVLFGEGTTRANICDEITKPILVAAIATVRVEP
VPDGVIKKQGIDGNGETVHWQVNEVLSKNHKSVYEHLHKYFNETIWLVGY
RFQFGPGRFAGKLLEKNIADITEKDAVGAFIPYLDHPTNGPGFDDNGDEI
SDDNNSGKGDEHDDDDAGDEDNGEGGDENSGEGDHGGGGGDARPDPPDQE
VGANQAAAGGKDAGASSGVRARPAE*
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mRNA from alignment at S-firma_M_contig9:85344..88183-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9.19929.1 ID=mRNA_S-firma_M_contig9.19929.1|Name=mRNA_S-firma_M_contig9.19929.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=2840bp|location=Sequence derived from alignment at S-firma_M_contig9:85344..88183- (Sphaerotrichia firma Sfir_13m male)
GGAAACTCCGATGATGACGGTACTACTCTGTACCTCCGCACTGTCGTCTG
TGTCGTGCACGTTCCGTGAATGTCCCAACGTGATACATACGTCAGGCTGA
ACGGCGTCGCTTCAACGAAATAATAACCCAGCCGCTAAAACTAGTCGCGT
GGTACCCTGACCGACACCGGCACATGATGACGTATACATCCCGTCCACTC
TTCCCCGGATGAATACGTCAGGATAAAAATGTCCCATGATGACTGTCGAG
ATATTGGAGACCTTTGCCCCCCTCGAACGTAGAGGGGGAAATACGCGAGA
TAACGGCATGTTGTGCATTCATCCCCTTCCTTCTACGCTTTCTAATCAAC
GCTTCCTCTGGCGTCGACCTCAATCAGATTGCGCTGGACTTTGAGGAACG
TTTCTTCGACATGATGATGAGTGGCCTCACGACGGCATGCCCTAACTTCA
GGCCCCGCGCGGAAGTTCTGTTTGGCGAAGGGACCACCCGTGCTAACATT
TGCGACGAGGTGATACGGGTGCCCATATATATAGCGAGGTTTTTTTCTTG
TTGTCACGTGCAGTTTGTGTGTGGTTGACGTTTGCGGCCGTTGCTTGCGA
CGCGGGTTCGCCGCGGTGTTTCACGTAGCGGTTCAACGTATGTTGCACGA
GGTATACTTAATTTTACTTCCTTTCAATCCTCTTCGTTGCGCCCTTTTTG
ATCATGAAGCGGAGGGACCATCCACGTTTACCTTCGCGACGAGGTGATGT
GGTTGCTCGAATTCCATCGTTTTTTCGTGGGCTGATGTGCCCAAACTTTG
ACGCTTGCGACCTCGTCTGTTGTAGGCGGGGCTGATTGCCGCTGTAAGAG
CTTCGTGTAGAAATGCCAGGCCCATGCGACTTACCCACGCTACGCCTACC
TAATGCCCTACATCGCCCTCTCCCTTTCCTTCGTTTCAATCTTTTAGATC
ACGAAGCCCATCCTCGTAGCGGCGATCGCCACCGTTCGTGTTGAGCCTGT
TCCCGACGGCGTGATCAAGAAGCAAGGCATCGACGGCAATGGGGAGACAG
TGCACTGGCAGGTGAACGAGGTGCTGTCGAAGAACCACAAGAGCGTCTAC
GAGCACTTGCACAAGTATTTCAACGAAACGTGAGTAAATGTTTTATGTGT
ATGCTTGCACAATGGTGCCGCGTGCGAAAAATATATGGATTTTCTGCTGC
CTGAATCTGAGACGTTTTGATGGGGTGTCATGTTTCCTCTCTCCCTCGGA
CGGCACATGCGTGAGGAGCCAACATTTTCTGCTGCCTCGCACTGAGAGGA
TTCTTTATTGGTTTTACATTTCCACCTCTCGCTCGGAGGGCATGCTTGCA
GAGCGGCAACAAGAGAGCTCTGCAGATAACCTTACCGCCTGCACCACCCA
ACCAGGGTGCTGCGATTCCTCATCGACATGTTTTCTTCTCTCGTTCGGTA
TTGATTCAAACTTGCAACAACGGCTAGGATTTGGCTCGTTGGCTACCGTT
TCCAGTTCGGCCCTGGACGTTTTGCCGGCAAGCTCCTGGAGAAGAACATC
GCCGACATCACGGAGAAGGACGCCGTCGGCGCCTTCATCCCGTACCTGGA
CCGTGAGTTTGCCTTGGAACACCTCTCGACCGACTTGCATAGGATGTTGG
ATAGGCGTGAGGTCCACTGGTGTGGCTGTCTTGAAACAGCAATCTGAAGC
CAAAACTCTGATGGTGTAGTTATATGAAACAAGTCATCGGGCTCCAGACG
GCAAGTTGAAACTAGGGGTACAAGTTGAGACGCGCCGGCCTGTGTGTGTT
GTGGGTCTCGTGCTGATCATGTTGCACAGCAAGATATACGCATTGTTCGG
CCGTCTCAACCGTACGCGCCAAGTTTCCTCGTTGTCCCGAGTTTTTTTTT
TTTTTTTCATGTGGTCGCTGCGTGCGAGAAGCTCATGCGGTTTGGTGTCT
TTTCTACATTCCCACTTTCGTAGCCCCCCGTCCCTCGAATTCTTGACGCT
CTCGTCTCCGGCAAGTGGCTTTGAAACGCGTTTTTTTTCTGATGTTGATG
TCGCCGTCATGACTATTGCATCCGAAGAGATTATCTCCCGGACCGGCCAA
GAAATAAACCTAGCAGATACTCCGCATGTCACAGTGACACGCGACCTCCT
ATTTTTTGCCCGATAACGGTAGAAATGATTGTTCTACATCCGTCCTGCCC
ACATCACGTGTGTGTTAGGACTTCACCTACAAATATCCTTTAGTGTGTCC
GGTGTGCCGCAAGCGCTTATCCCTGTGCCGCAAGCAGAGTGAACCCGCCC
GGGGTGATGACCTTGGCTCTAACCCAACATGAGACGAAAAGAGCCCTGAG
CACAAATGTGTGATAACCCGTTAACCCTTCTCGTTAATTCTTTGTGGGCT
CCTATTCCGCTATTATCCCGTTTGTGTGCACAGATCCAACGAACGGCCCG
GGCTTCGACGATAATGGCGACGAGATCTCCGACGACAACAACTCGGGCAA
AGGCGACGAGCATGACGATGACGATGCAGGCGACGAGGATAACGGTGAAG
GAGGCGACGAGAACTCGGGCGAAGGCGACCATGGCGGTGGAGGCGGCGAC
GCTCGTCCTGACCCTCCTGACCAGGAGGTGGGCGCCAACCAGGCCGCTGC
AGGCGGCAAGGATGCTGGAGCCTCGAGTGGAGTCCGAGCACGCCCTGCTG
AATAAGCACCGGAGCAGGCGGTTGGTGACGGTGCACTTCTCGTGGTCGCA
ATATAGCACGAGAAATATGGCAGAGAGAAGTTGTTGGCTGCAATGGGCGT
GTAGACTTAAGCTGATTTTTTTCGTTACCCGCATGTGTGG
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Coding sequence (CDS) from alignment at S-firma_M_contig9:85344..88183-

>mRNA_S-firma_M_contig9.19929.1 ID=mRNA_S-firma_M_contig9.19929.1|Name=mRNA_S-firma_M_contig9.19929.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1356bp|location=Sequence derived from alignment at S-firma_M_contig9:85344..88183- (Sphaerotrichia firma Sfir_13m male)
ATGATGATGAGTGGCCTCACGACGGCATGCCCTAACTTCAGGCCCCGCGC
GGAAGTTCTGTTTGGCGAAGGGACCACCCGTGCTAACATTTGCGACGAGA
TGATGATGAGTGGCCTCACGACGGCATGCCCTAACTTCAGGCCCCGCGCG
GAAGTTCTGTTTGGCGAAGGGACCACCCGTGCTAACATTTGCGACGAGAT
CACGAAGCCCATCCTCGTAGCGGCGATCGCCACCGTTCGTGTTGAGCCTG
TTCCCGACGGCGTGATCAAGAAGCAAGGCATCGACGGCAATGGGGAGACA
GTGCACTGGCAGGTGAACGAGGTGCTGTCGAAGAACCACAAGAGCGTCTA
CGAGCACTTGCACAAGTATTTCAACGAAACATCACGAAGCCCATCCTCGT
AGCGGCGATCGCCACCGTTCGTGTTGAGCCTGTTCCCGACGGCGTGATCA
AGAAGCAAGGCATCGACGGCAATGGGGAGACAGTGCACTGGCAGGTGAAC
GAGGTGCTGTCGAAGAACCACAAGAGCGTCTACGAGCACTTGCACAAGTA
TTTCAACGAAACGATTTGGCTCGTTGGCTACCGTTTCCAGTTCGGCCCTG
GACGTTTTGCCGGCAAGCTCCTGGAGAAGAACATCGCCGACATCACGGAG
AAGGACGCCGTCGGCGCCTTCATCCCGTACCTGGACCGATTTGGCTCGTT
GGCTACCGTTTCCAGTTCGGCCCTGGACGTTTTGCCGGCAAGCTCCTGGA
GAAGAACATCGCCGACATCACGGAGAAGGACGCCGTCGGCGCCTTCATCC
CGTACCTGGACCATCCAACGAACGGCCCGGGCTTCGACGATAATGGCGAC
GAGATCTCCGACGACAACAACTCGGGCAAAGGCGACGAGCATGACGATGA
CGATGCAGGCGACGAGGATAACGGTGAAGGAGGCGACGAGAACTCGGGCG
AAGGCGACCATGGCGGTGGAGGCGGCGACGCTCGTCCTGACCCTCCTGAC
CAGGAGGTGGGCGCCAACCAGGCCGCTGCAGGCGGCAAGGATGCTGGAGC
CTCGAGTGGAGTCCGAGCACGCCCTGCTGAATAAATCCAACGAACGGCCC
GGGCTTCGACGATAATGGCGACGAGATCTCCGACGACAACAACTCGGGCA
AAGGCGACGAGCATGACGATGACGATGCAGGCGACGAGGATAACGGTGAA
GGAGGCGACGAGAACTCGGGCGAAGGCGACCATGGCGGTGGAGGCGGCGA
CGCTCGTCCTGACCCTCCTGACCAGGAGGTGGGCGCCAACCAGGCCGCTG
CAGGCGGCAAGGATGCTGGAGCCTCGAGTGGAGTCCGAGCACGCCCTGCT
GAATAA
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