mRNA_S-firma_M_contig9.19921.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9.19921.1
Unique NamemRNA_S-firma_M_contig9.19921.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
BLAST of mRNA_S-firma_M_contig9.19921.1 vs. uniprot
Match: Q6XLY6_9PHYC (FirrV-1-B50 n=2 Tax=root TaxID=1 RepID=Q6XLY6_9PHYC)

HSP 1 Score: 777 bits (2007), Expect = 5.030e-282
Identity = 366/435 (84.14%), Postives = 404/435 (92.87%), Query Frame = 1
Query:   67 MTLFKTVHKRYTNFAEDLEENDFSAGTVGFGQKVSANVSRYGDLVSDIMLEVSLPPIAASTTVMDASGNAVADADKAAYWVNAIGYAIVSEIQIEIGGTEVDTLYPEWMFFWEEMTQRPGARLGEQIGKFAYSSDVEEDMIEFASMARTLYVPIPFWFNKYFMEHGLSIPLIALTYHEIKVKVTFRPLAECCCVVYRDTDAMHGDFWALAENKIPLNATSGSTLVASDMDAKLLISYVYLDVEERQAFAAVEHEYLITTTQRQMHAITSAGSASDQIKLYFNHPSNCLSWFIRPTDWMTNRRRYSVGHQDSFDFSLKRDSDVSVWGDVTDPVRCASLSLNGHARWPDNLPGMFFRQTQPIMKWPNVSNGYMYVFSFSSQGGVWQPTSTLNMSRIDHVQLELKYGTSIPTSDVFVFAESYNLLVVKDGMGGVKYSN 1371
            MTLFKTVH+R+T+FAEDLEENDFSAGTVGFGQKVSA +SRYGDLV+D+ +E+ LPPI A+  V DASGN VADADKAAYWVNAIG+A++SE+QIEIGGTEVD LYPEWMFFWEEMTQRPGARLGEQIGKF YS+DVEEDMIEFA  ARTLYVP+PFWFNKYFME GLSIPLIALTYHEIKVKVTFRPL+ECCCVVYR  D  HG+++ALAE K+P+N+TSGSTLV+SDMDAKLL+SYVYLD +ER AFA  EH YLITTTQRQMHAITSAGS+SDQIKLYFNHPSNCL+WF+RPTDWMTNRRRYSVGH D FD+SLK  SDVSVWGDVTDPV+ ASL+LNGH+R+PDN+PG+FFRQTQPIMKWPN SNGYMYVFSFS QGG WQPTSTLNMSRIDHVQLELKYGTSIPTS+VFVFAESYNLLVVK+GMGGV+YSN
Sbjct:    1 MTLFKTVHRRFTSFAEDLEENDFSAGTVGFGQKVSATISRYGDLVTDMFMEIHLPPIEAAVNVTDASGNTVADADKAAYWVNAIGFALISEVQIEIGGTEVDILYPEWMFFWEEMTQRPGARLGEQIGKFTYSADVEEDMIEFAQQARTLYVPLPFWFNKYFMEAGLSIPLIALTYHEIKVKVTFRPLSECCCVVYRTEDPTHGEYYALAEGKVPVNSTSGSTLVSSDMDAKLLVSYVYLDKKERDAFATTEHTYLITTTQRQMHAITSAGSSSDQIKLYFNHPSNCLTWFVRPTDWMTNRRRYSVGHMDLFDYSLKSTSDVSVWGDVTDPVKTASLTLNGHSRFPDNMPGLFFRQTQPIMKWPNCSNGYMYVFSFSLQGGSWQPTSTLNMSRIDHVQLELKYGTSIPTSNVFVFAESYNLLVVKEGMGGVRYSN 435          
BLAST of mRNA_S-firma_M_contig9.19921.1 vs. uniprot
Match: B5LWE8_9PHYC (Putative major capsid protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWE8_9PHYC)

HSP 1 Score: 771 bits (1991), Expect = 1.380e-279
Identity = 368/435 (84.60%), Postives = 401/435 (92.18%), Query Frame = 1
Query:   67 MTLFKTVHKRYTNFAEDLEENDFSAGTVGFGQKVSANVSRYGDLVSDIMLEVSLPPIAASTTVMDASGNAVADADKAAYWVNAIGYAIVSEIQIEIGGTEVDTLYPEWMFFWEEMTQRPGARLGEQIGKFAYSSDVEEDMIEFASMARTLYVPIPFWFNKYFMEHGLSIPLIALTYHEIKVKVTFRPLAECCCVVYRDTDAMHGDFWALAENKIPLNATSGSTLVASDMDAKLLISYVYLDVEERQAFAAVEHEYLITTTQRQMHAITSAGSASDQIKLYFNHPSNCLSWFIRPTDWMTNRRRYSVGHQDSFDFSLKRDSDVSVWGDVTDPVRCASLSLNGHARWPDNLPGMFFRQTQPIMKWPNVSNGYMYVFSFSSQGGVWQPTSTLNMSRIDHVQLELKYGTSIPTSDVFVFAESYNLLVVKDGMGGVKYSN 1371
            MTLFKTVHKRYT+FAEDLEENDFSAGTVGFGQKVSANVSRYGDLV+D+ +EV+LPPI A+ TV +A G  VADADKAAYWVNAIGYA++SEIQIEIGGTEVDTLYPEWMFFWE MTQRPGARLGEQIGKFAYS+DVEEDMIEFA  ARTLYVP+PFWFNKYFME GLSIPLIALTYHEIKVKVTFRPL+ECCCVVYR  D  HG+++ALAE K P+N TSGSTLV+SDMDAKLLISYVYLD  ER AFA+ EH YLIT TQRQ+HAITSAGSASDQIKLYFNHPSNCL+WF+RPTDW TNRRR+SVGH DSFDFSL  DSDVSVWGDV DPV+ ASL+LNGH+R+PD +PG+FFRQTQPIMKWPN S+G+MYVFSFS QGG WQPTSTLNMSRIDHVQLELKYG++IPTSDVFVFAESYNLLVVKDGMGGV+YSN
Sbjct:    1 MTLFKTVHKRYTSFAEDLEENDFSAGTVGFGQKVSANVSRYGDLVTDMFMEVALPPIEAAATVTNAEGVEVADADKAAYWVNAIGYALISEIQIEIGGTEVDTLYPEWMFFWESMTQRPGARLGEQIGKFAYSADVEEDMIEFAQQARTLYVPLPFWFNKYFMETGLSIPLIALTYHEIKVKVTFRPLSECCCVVYRAEDETHGEYFALAEGKTPVNTTSGSTLVSSDMDAKLLISYVYLDKAERDAFASTEHSYLITRTQRQLHAITSAGSASDQIKLYFNHPSNCLAWFVRPTDWTTNRRRFSVGHMDSFDFSLHTDSDVSVWGDVIDPVKSASLNLNGHSRFPDGMPGLFFRQTQPIMKWPNCSDGFMYVFSFSLQGGAWQPTSTLNMSRIDHVQLELKYGSNIPTSDVFVFAESYNLLVVKDGMGGVRYSN 435          
BLAST of mRNA_S-firma_M_contig9.19921.1 vs. uniprot
Match: Q8QNG3_ESV1K (EsV-1-116 n=4 Tax=root TaxID=1 RepID=Q8QNG3_ESV1K)

HSP 1 Score: 699 bits (1804), Expect = 1.870e-250
Identity = 330/431 (76.57%), Postives = 382/431 (88.63%), Query Frame = 1
Query:   67 MTLFKTVHKRYTNFAEDLEENDFSAGTVGFGQKVSANVSRYGDLVSDIMLEVSLPPIAASTTVMDASGNAVADADKAAYWVNAIGYAIVSEIQIEIGGTEVDTLYPEWMFFWEEMTQRPGARLGEQIGKFAYSSDVEEDMIEFASMARTLYVPIPFWFNKYFMEHGLSIPLIALTYHEIKVKVTFRPLAECCCVVYRDTDAMHGDFWALAENKIPLNATSGSTLVASDMDAKLLISYVYLDVEERQAFAAVEHEYLITTTQRQMHAITSAGSASDQIKLYFNHPSNCLSWFIRPTDWMTNRRRYSVGHQDSFDFSL-KRDSDVSVWGDVTDPVRCASLSLNGHARWPDNLPGMFFRQTQPIMKWPNVSNGYMYVFSFSSQGGVWQPTSTLNMSRIDHVQLELKYGTSIPTSDVFVFAESYNLLVVKDGMGG 1356
            MTLFK+ HKRYTNFAED EENDFSAGTVGFGQ+VSANVSRYGDLVSD++LEV+LP I AS +V++ +G  VADADKAAYWVNAIGYAI+SE++IEIGGTEVDTLY EWMF WEE+TQRPGARLGEQIGKFAYS+DVEEDMIEFAS  R LYVP+PFWFNKY+MEHGLSIPLIALTYHEIK+KV+FRPLA+CC VVYR++D   GD+WALA +KIP+N  S S + ASDMDA+LL+SYVYLD EERQAFA+V+HEYLITTTQRQMH+ITSA + SDQ+KLYFNHPSN L WF+RPTD+   RRR+SVGH+D FDFSL K D+ VS+WGDVTD V  ASL+LNGH+R+PD+LPG+FFRQ QP +KWPN   GY Y+F+F++ GGVW PTSTLNMSRIDHVQLELKYG +IPTSDV VF E+YNLLV+K+GMGG
Sbjct:    1 MTLFKSQHKRYTNFAEDFEENDFSAGTVGFGQRVSANVSRYGDLVSDVLLEVTLPAIQASESVVNGAGTEVADADKAAYWVNAIGYAIISEVEIEIGGTEVDTLYSEWMFLWEELTQRPGARLGEQIGKFAYSADVEEDMIEFASQERKLYVPLPFWFNKYWMEHGLSIPLIALTYHEIKIKVSFRPLADCCAVVYRESDPTWGDYWALAADKIPINTASASAMAASDMDARLLVSYVYLDQEERQAFASVQHEYLITTTQRQMHSITSASAKSDQLKLYFNHPSNALIWFVRPTDFKNLRRRFSVGHKDMFDFSLQKEDATVSMWGDVTDSVASASLTLNGHSRFPDSLPGLFFRQVQPALKWPNTPAGYTYLFTFAALGGVWNPTSTLNMSRIDHVQLELKYGDNIPTSDVIVFNEAYNLLVIKEGMGG 431          
BLAST of mRNA_S-firma_M_contig9.19921.1 vs. uniprot
Match: A0A835Z4S3_9STRA (Large eukaryotic DNA virus major capsid protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4S3_9STRA)

HSP 1 Score: 426 bits (1095), Expect = 3.370e-141
Identity = 211/463 (45.57%), Postives = 310/463 (66.95%), Query Frame = 1
Query:    4 GGVIQIAAQGRQNQHLNGNPDMTLFKTVHKRYTNFAEDLEENDFSAGTVGFGQKVSANVSRYGDLVSDIMLEVSLPPIAASTTVMDASGNAVAD--ADKAAYWVNAIGYAIVSEIQIEIGGTEVDTLYPEWMFFWEEMTQRPGARLGEQIGKFAYSSDVEEDMIEFASMARTLYVPIPFWFNKYF-MEHGLSIPLIALTYHEIKVKVTFRPLAECCCVVYRDTDAMHGDFWALAENKIPLNATSGSTLVASDMDAKLLISYVYLDVEERQAFAAVEHEYLITTTQRQMHAITSAGSASDQIKLYFNHPSNCLSWFIRPTDWMTN--RRRYSVGHQDSFDFSLKRDS-DVSV-WGDVTDPVRCASLSLNGHARWPDNLPGMFFRQTQPIMKWPNVSNGYMYVFSFSSQGGVWQPTSTLNMSRIDHVQLELKYGTSIPTSDVFVFAESYNLLVVKDGMGGVKYSN 1371
            GGVIQIAA+G Q+  LN +P  T++++VH R+T+ A D E  D S    GF    SA ++RYGDL+S + LE++LPP+AA    +  +        AD AA+WVN IG+A   ++Q+EIGG+ VD LY ++   +EE+  RPG RL E IG+  +S  V+ED+IE A   + LYVP+P WF+KY    +GL++P++ALT+H++++K+  R ++EC CV+Y+D  A     W LAEN+IPLNA +G+ LV +D+  +L+++ VYLD  ER A ++V H +LI+T QRQ+H+I +  S   + KL+FNHP++ L WF+RP DW T   RRR+S G +D +DF+    S D S+ +GD  DP+R ASL+LNGHARWP ++   +FR   P   W  +    +Y +SF+ +   WQPTS LN SR+DHV L   +  +I +S+ F F E+YNLLV++DG+GG+++SN
Sbjct:  139 GGVIQIAARGSQDAILNDSPTHTIWRSVHTRFTSCAMDDEFQDLSNS--GFDTSSSATINRYGDLISRVTLEITLPPLAAPQVPITGTSPVTYHPAADTAAHWVNCIGFACWEDVQVEIGGSLVDQLYSDFAMIYEELAGRPGVRLEEAIGRVQFSDAVDEDLIEKAKKQQILYVPLPLWFSKYQPATYGLALPIVALTFHDVRIKIKTRSISECTCVLYKDNAA-----WKLAENQIPLNANTGTALVNADLKIRLMVTSVYLDTTERTAMSSVVHSFLISTAQRQVHSIAANQSTKQEEKLFFNHPASSLIWFVRPLDWNTEAGRRRFSCGFRDRYDFTAHEASTDASLPYGDAVDPIRTASLTLNGHARWPTDMDSRYFRMHMPYCAWRTMPTTSIYTYSFALEAHQWQPTSHLNFSRLDHVSLGWTFCPNIKSSEAFSFVEAYNLLVIRDGLGGLRFSN 594          
BLAST of mRNA_S-firma_M_contig9.19921.1 vs. uniprot
Match: A0A835ZBK3_9STRA (Putative major capsid protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBK3_9STRA)

HSP 1 Score: 404 bits (1037), Expect = 2.930e-134
Identity = 205/464 (44.18%), Postives = 303/464 (65.30%), Query Frame = 1
Query:    4 GGVIQIAAQGRQNQHLNGNPDMTLFKTVHKRYTNFAEDLEENDFSAGTVGFGQKVSANVSRYGDLVSDIMLEVSLPPIAASTTVMDASGNAV--ADADKAAYWVNAIGYAIVSEIQIEIGGTEVDTLYPEWMFFWEEMTQRPGARLGEQIGKFAYSSDVEEDMIEFASMARTLYVPIPFWFNKYF-MEHGLSIPLIALTYHEIKVKVTFRPLAECCCVVYRDTDAMHGDFWALAENKIPLNATSGSTLVASDMDAKLLISYVYLDVEERQAFAAVEHEYLITTTQRQMHAITSAGSASDQIKLYFNHPSNCLSWFIRPTDWMTN--RRRYSVGHQDSFDFSLKRDSDVSV---WGDVTDPVRCASLSLNGHARWPDNLPGMFFRQTQPIMKWPNVSNGYMYVFSFSSQGGVWQPTSTLNMSRIDHVQLELKYGTSIPTSDVFVFAESYNLLVVKDGMGGVKYSN 1371
            GGVIQIAA+G Q+  +N +P  T+++ VH R+T+ A D E  + S    GF    SA ++RYGDL+S + LE+ LPP+AA    +  +  A   A AD AAY+VN+IGYA   ++Q+EIGG+ VD LY ++   +EE+  RPG RL E IGK  YS++V++D+IE AS  +TLYVP+P W +KY     GL++P++ALT+H++++K+  RP+A+C  V +RD  +     W L E  +PLN  + + LV SD+  +L+I+ VYLDV ER A ++V H +LI T QRQ+  + +  S+  + KLY NHP + ++W +RP +W TN  RRR+S G +D +DFS K    V+    +G+   P+  ASLSLNGH RWP ++P  +F   QP + W  +    +  +SF+ +   WQPTSTLN SR+DHV L   +   +  S++ VFAE+YNLLV++DG+GG+++SN
Sbjct:    5 GGVIQIAARGTQDAVINDSPTHTIWRAVHTRFTSCAMDDELQELSNS--GFDTSSSATINRYGDLISRVSLEIVLPPLAAPEIAIAGASPAANYAPADCAAYYVNSIGYACWEDVQVEIGGSLVDQLYSDFAVIFEELAGRPGLRLEECIGKVQYSAEVDDDLIEKASRQQTLYVPLPLWMSKYQPATWGLALPIVALTFHDVRIKIKTRPIADCTVVCHRDAVSQA---WTLDEGLLPLNGNTLTPLVNSDLKIRLMITSVYLDVTERAAMSSVTHSFLINTAQRQIATVPANVSSKLETKLYLNHPCSAMTWVVRPLNWNTNAGRRRFSCGFRDRYDFSHKEAGTVTSALPYGNAISPIANASLSLNGHQRWPVDMPSSYFTNHQPYVHWRTMPATPIMTYSFALEAAQWQPTSTLNFSRLDHVSLGFNFNAELQASEMLVFAEAYNLLVIRDGLGGLRFSN 463          
BLAST of mRNA_S-firma_M_contig9.19921.1 vs. uniprot
Match: A0A835Z0V5_9STRA (Putative major capsid protein n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0V5_9STRA)

HSP 1 Score: 391 bits (1004), Expect = 6.870e-130
Identity = 190/415 (45.78%), Postives = 275/415 (66.27%), Query Frame = 1
Query:  151 GFGQKVSANVSRYGDLVSDIMLEVSLPPIAASTTVMDASGNAV---ADADKAAYWVNAIGYAIVSEIQIEIGGTEVDTLYPEWMFFWEEMTQRPGARLGEQIGKFAYSSDVEEDMIEFASMARTLYVPIPFWFNKYFME-HGLSIPLIALTYHEIKVKVTFRPLAECCCVVYRDTDAMHGDFWALAENKIPLNATSGSTLVASDMDAKLLISYVYLDVEERQAFAAVEHEYLITTTQRQMHAITSAGSASDQIKLYFNHPSNCLSWFIRPTDWMTN--RRRYSVGHQDSFDFSLKR--DSDVSVWGDVTDPVRCASLSLNGHARWPDNLPGMFFRQTQPIMKWPNVSNGYMYVFSFSSQGGVWQPTSTLNMSRIDHVQLELKYGTSIPTSDVFVFAESYNLLVVKDGMGGVKYSN 1371
            GF    SA ++RYGDL+S I LE+ LPP+AA    +  + N V   A  D AA+WVNAIG+A   ++Q+EIGG+ VD LY ++   +EE+  RPG RL E IG+  YS++V+ D+IE A  A+ LYVP+P WF+KY    +GL++P++ALT+H++++K+  R +A+C CVVY++ D  H        +  PLNA++G+TLV +D+  +L++S VYLD  ER A + V H +LI TTQRQ+H+I +  S   + KLYFNHPS+ L W +RP DW T   RRR+S G +D FDF+     D D  ++G+  DP+  +SLSLNGH RWP ++P  +FR   P   W  + +  +Y +SF+ +   WQPTS LN SR+DHV L   +   I +S+ F F E+YNLLV++DG+GG+++SN
Sbjct:   12 GFDTSSSATINRYGDLISRITLEIRLPPLAAPQVPVVPATNPVTYYASEDTAAHWVNAIGFACWEDVQVEIGGSLVDQLYSDFAMIYEELAGRPGVRLEESIGRVPYSAEVDLDLIEKAQKAQILYVPLPLWFSKYQPSTYGLALPIVALTFHDVRLKIKTRSIADCTCVVYKEDDVWH------LTDLAPLNASTGTTLVNADLKIRLMVSSVYLDTTERTAMSTVTHSFLINTTQRQVHSIAAGQSTRQEEKLYFNHPSSSLIWIVRPLDWNTQAGRRRFSCGFKDRFDFTAYEASDDDSLIYGNAVDPIVSSSLSLNGHQRWPTDMPSTYFRTHVPYCNWRTLPSTSIYSYSFALEASAWQPTSHLNFSRLDHVSLGWSFAPGIKSSEAFSFVEAYNLLVIRDGLGGLRFSN 420          
BLAST of mRNA_S-firma_M_contig9.19921.1 vs. uniprot
Match: A0A835Z566_9STRA (FirrV-1-B50 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z566_9STRA)

HSP 1 Score: 378 bits (971), Expect = 1.150e-124
Identity = 199/445 (44.72%), Postives = 287/445 (64.49%), Query Frame = 1
Query:   70 TLFKTVHKRYTNFAEDLEENDFSAGTVGFGQKVSANVSRYGDLVSDIMLEVSLPPIAASTTVMDASGNAVADA---DKAAYWVNAIGYAIVSEIQIEIGGTEVDTLYPEWMFFWEEMTQRPGARLGEQIGKFAYSSDVEEDMIEFASMARTLYVPIPFWFNKYF-MEHGLSIPLIALTYHEIKVKVTFRPLAECCCVVYRDTDAMHGDFWALAENKIPLNATSGSTLVASDMDAKLLISYVYLDVEERQAFAAVEHEYLITTTQRQMHAITSAGSASDQIKLYFNHPSNCLSWFIRPTDWMTN--RRRYSVGHQDSFDFSLKRDSDVSV-----WGDVTDPVRCASLSLNGHARWPDNLPGMFFRQTQPIMKWPNVSNGYMYVFSFSSQGGVWQPTSTLNMSRIDHVQLELKYGTSIPTSDVFVFAESYNLLVVKDGMGGVKYSN 1371
            T++K+VH R+T+ A D E  + S  T GF    +A +SRYGDLVS I LE+ LPP++A   + D S  A A A   D  A++VN IG+A   +  IEIGG+ VD L+ ++ F +EE+  R G RL E IG+  +S+DV+ED+IE ++  +TLYVP+P WF+KY     GL++P++AL++HEIK+K+  R +AEC  V+Y+D+    GD W L++   P+NAT+G+ LV SDM  +LL+S+VYLDV ER A ++V H +LI  TQRQ+ A+ +   +  + KL+FNHP + L W++RP DW T   RRR+S G++D +DFS ++   V       WGD  D +  ASLSLNGH RWP +    +FR   P   W  +    +Y +SF+ Q   WQPT+ LN SR +HV L L +   I  S++    ESYNLL++ +G+GG+K+SN
Sbjct:    1 TIWKSVHTRFTSCALDDEFQELS--TSGFASTSTATISRYGDLVSRITLEIVLPPLSAPD-IPDTSAGAPAGALYADTGAHYVNCIGFAAWEDCIIEIGGSTVDQLFSDFCFIYEELAGRAGMRLEEAIGRVPFSADVDEDLIEKSTREQTLYVPLPLWFSKYQPATWGLALPIVALSFHEIKLKLKTRSIAECVSVIYKDSA---GD-WRLSD-LAPINATTGTALVNSDMKIRLLVSFVYLDVTERNAMSSVAHSFLINVTQRQVMAVAAGSFSKIENKLFFNHPCSSLLWYMRPLDWNTEGGRRRFSCGYKDRYDFSHQQQGSVDATKGLPWGDAIDAITTASLSLNGHQRWPQDQNSAYFRVLTPYTSWRTMPTTNIYTYSFALQAHDWQPTAHLNFSRYNHVSLGLTFAAGIKASELIAMVESYNLLIIANGLGGLKFSN 437          
BLAST of mRNA_S-firma_M_contig9.19921.1 vs. uniprot
Match: A0A835Z3V1_9STRA (Putative major capsid protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3V1_9STRA)

HSP 1 Score: 369 bits (948), Expect = 3.090e-121
Identity = 195/440 (44.32%), Postives = 280/440 (63.64%), Query Frame = 1
Query:   70 TLFKTVHKRYTNFAEDLEENDFSAGTVGFGQKVSANVSRYGDLVSDIMLEVSLPPIAASTTVMDASGNAVADA---DKAAYWVNAIGYAIVSEIQIEIGGTEVDTLYPEWMFFWEEMTQRPGARLGEQIGKFAYSSDVEEDMIEFASMARTLYVPIPFWFNKYF-MEHGLSIPLIALTYHEIKVKVTFRPLAECCCVVYRDTDAMHGDFWALAENKIPLNATSGSTLVASDMDAKLLISYVYLDVEERQAFAAVEHEYLITTTQRQMHAITSAGSASDQIKLYFNHPSNCLSWFIRPTDWMTN--RRRYSVGHQDSFDFSLKRDSDVSV-----WGDVTDPVRCASLSLNGHARWPDNLPGMFFRQTQPIMKWPNVSNGYMYVFSFSSQGGVWQPTSTLNMSRIDHVQLELKYGTSIPTSDVFVFAESYNLLVVKDGMGG 1356
            T+FK+VH R+T+FA D +  + S  T GF    +A +SRYGDL+S I LE+ LP + A   + D S  A A A   +  AY+VN IG+A+  +  +EIGG+ +D L+ ++ F +EEM  R G RL E +G+ A+S  V++D+IE +S  +TLYVP+P WF+KY     GL++P++AL++HEIK+K+  R +AEC  VVY+D     GD W L++   P+N  +G+ LV SD+  +LL+SYVYLDV ER A ++V H  LI  TQRQ+ ++ +   A  + KL+ NHP   L W++RP DW T   RRR+S G++D FDFS + +  V       WGD  D +  ASLSLNGH RWP ++   +FR   P   W  + +  +Y +SF+ Q   WQPTS LN SR+DH+ L L + + I  S++  F ESYNLLV+ +G+GG
Sbjct:    1 TIFKSVHTRFTSFALDDDFQELS--TSGFASTSTATLSRYGDLISRITLEIVLPALKAPD-IPDTSAGASAGALYAETGAYYVNCIGWAVWEDCILEIGGSTIDQLFSDFCFIYEEMAGRAGLRLEEAVGRVAFSEAVDDDLIEKSSREQTLYVPLPLWFSKYNPATFGLALPIVALSFHEIKLKLKTRSIAECVSVVYKDAA---GD-WRLSD-LAPINKATGTALVNSDLKMRLLVSYVYLDVTERNAMSSVAHSMLINVTQRQVMSVAAGSYAKSEQKLFMNHPCTDLIWYLRPLDWNTEGGRRRFSCGYKDRFDFSHQEEGSVDPTKGLPWGDSVDAITTASLSLNGHQRWPADMKANYFRVVTPWTSWRTMPSTPIYSYSFALQAHDWQPTSHLNFSRLDHISLGLTFASGIKASELVAFVESYNLLVIANGLGG 432          
BLAST of mRNA_S-firma_M_contig9.19921.1 vs. uniprot
Match: A0A835ZCT3_9STRA (FirrV-1-B50 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCT3_9STRA)

HSP 1 Score: 350 bits (897), Expect = 6.540e-113
Identity = 190/432 (43.98%), Postives = 272/432 (62.96%), Query Frame = 1
Query:   79 KTVHKRYTNFAEDLEENDFSAGTVGFGQKVSANVSRYGDLVSDIMLEVSLPPIAASTTVMDASGNAVADA---DKAAYWVNAIGYAIVSEIQIEIGGTEVDTLYPEWMFFWEEMTQRPGARLGEQIGKFAYSSDVEEDMIEFASMARTLYVPIPFWFNKYF-MEHGLSIPLIALTYHEIKVKVTFRPLAECCCVVYRDTDAMHGDFWALAENKIPLNATSGSTLVASDMDAKLLISYVYLDVEERQAFAAVEHEYLITTTQRQMHAITSAGSASDQIKLYFNHPSNCLSWFIRPTDWMTN--RRRYSVGHQDSFDFSLKRDSDVSV-----WGDVTDPVRCASLSLNGHARWPDNLPGMFFRQTQPIMKWPNVSNGYMYVFSFSSQGGVWQPTSTLNMSRIDHVQLE--LKYGTSIPTSDVFVFAESYNLLV 1335
            + VH R+T+ A D E  + S  T GF    +A +SRYGDLVS I LE+ LPP++A   + D S  A A A   D AAY+VN+I +A   ++ +EIGG+ VD L+ ++ F +EE+  R G RL E IG+  +S+DV+ED+ E ++  +TLYVP+P WF+KY     GL++P++AL++HEIK+K+  R +AEC  VVY+D+    GD W L++   P+NAT+G+ LV SDM  +LL+S+VYLDV ER A ++V H +LI  TQRQ+ A+ +   +  + KL+FNHP + L W++RP DW     RRR+S G++D FDFS +    V       WGD  DP+  AS SLNGH RWP +   ++FR   P   W  +    +Y +SF+ Q   WQPT+ LNMSR+    L+  L +   I  S++    ESYNLL+
Sbjct:   40 RAVHTRFTSCALDDEFQELS--TSGFASTSTATISRYGDLVSRITLEIVLPPLSAPD-IPDTSSGAGAGAHYADTAAYYVNSIDFAAWEDVILEIGGSTVDQLFSDFCFIYEELAGRAGMRLEEAIGRVPFSADVDEDLAEKSAREQTLYVPLPLWFSKYQPATWGLALPIVALSFHEIKLKLKTRSIAECVSVVYKDSA---GD-WRLSD-LAPINATTGTALVNSDMKLRLLVSFVYLDVTERNAMSSVAHSFLINVTQRQVMAVAAGSFSKIENKLFFNHPCSSLLWYMRPQDWNLEGGRRRFSCGYKDRFDFSHQEQGTVDATKGLAWGDTVDPITTASRSLNGHQRWPQDQNAVYFRVLTPYTSWRTMPTTNIYTYSFALQAQDWQPTAHLNMSRLKKTGLKNGLTFAAGIKASELIAMVESYNLLI 463          
BLAST of mRNA_S-firma_M_contig9.19921.1 vs. uniprot
Match: A0A6C0LW13_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0LW13_9ZZZZ)

HSP 1 Score: 256 bits (654), Expect = 2.620e-77
Identity = 167/480 (34.79%), Postives = 244/480 (50.83%), Query Frame = 1
Query:    1 GGGVIQIAAQGRQNQHLNGNPDMTLFKTVHKRYTNFAEDLEENDFSAGTVGFGQKVSANVSRYGDLVSDIMLEVSLPPIAASTTVMDASGNAVADADKAAYWVNAIGYAIVSEIQIEIGGTEVDTLYPEWMFFWEEMTQRPGARLG--EQIGKFAYSSDVEEDMIEFASMARTLYVPIPFWFNKYFMEHGLSIPLIALTYHEIKVKVTFRPLAECCCVVYRDTDAMHGDFWALAENKIPLNATSGSTLVASDMDAKLLISYVYLDVEERQAFAAVEHEYLITTTQRQMHAITSAGSASDQIKLYFNHPSNCLSWFIRPTDWMTNRRRYSVGHQDSFDFS-LKRDSDVSVWGDVTDP-------------------VRCASLSLNGHARWPDNLPGMFFRQTQPIMKWPNVSNGYMYVFSFSSQGGVWQPTSTLNMSRIDHVQLELKYGTSIPT-SDVFVFAESYNLLVVKDGMGGVKYSN 1371
            GGG++Q+ A G Q+ +L GNP +T FK V++R+TNF+ +  E  F+ G+  +G+KVS  +SR GDL+  + L+ +LP + A               DK   W   +G+ +V  +++EIGG  +D  Y EWM  W E++Q PG + G    +G  A+ +   ++  E      TLY+P+ FWF +     GL++PLIAL YHE+K+ V F  L++C                    + +PL ATS   L     ++ L + Y+YLD +ER+ FA V HEYLI   Q Q     S  S+S ++KL FNHP   L W ++         R +  H   FDFS    D+D +  G  TD                    V+ A L LNGH R+ +   G +F   QP     NV +  + V+SF  +    QP+ T N SRID+  L+L   T     S V V+A +YN+L +  GMGG+ YSN
Sbjct:    2 GGGLMQLVAYGAQDIYLTGNPQITFFKVVYRRHTNFSMESIEQTFN-GSANWGKKVSCTISRNGDLIHRVYLQTTLPAVDAGD-------------DKTFAWSEWVGHQLVKNVEVEIGGQRIDKHYGEWMHLWNELSQSPGLQDGYARMVGHSAHLTVQTKETAE-----TTLYIPLQFWFCR---NPGLALPLIALQYHEVKINVEFNELSKC-------------------SSSVPLGATSAGDL----KNSSLYVDYIYLDTDERRRFAQVSHEYLIE--QLQFTGEESINSSSSKVKLNFNHPVKELVWVVQ---------RNTASH---FDFSDSSADTDGATSGTPTDTDTPLDRQFDTLRVTRSLNTVKNAKLQLNGHDRFQER-EGDYFNFVQPYQHHTNVPSTGINVYSFGLKPEEHQPSGTCNFSRIDNAVLQLSMETEATAGSKVRVYATNYNVLRIMSGMGGLAYSN 421          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9.19921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q6XLY6_9PHYC5.030e-28284.14FirrV-1-B50 n=2 Tax=root TaxID=1 RepID=Q6XLY6_9PHY... [more]
B5LWE8_9PHYC1.380e-27984.60Putative major capsid protein n=1 Tax=Feldmannia s... [more]
Q8QNG3_ESV1K1.870e-25076.57EsV-1-116 n=4 Tax=root TaxID=1 RepID=Q8QNG3_ESV1K[more]
A0A835Z4S3_9STRA3.370e-14145.57Large eukaryotic DNA virus major capsid protein-do... [more]
A0A835ZBK3_9STRA2.930e-13444.18Putative major capsid protein n=1 Tax=Tribonema mi... [more]
A0A835Z0V5_9STRA6.870e-13045.78Putative major capsid protein n=3 Tax=Tribonema mi... [more]
A0A835Z566_9STRA1.150e-12444.72FirrV-1-B50 n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A835Z3V1_9STRA3.090e-12144.32Putative major capsid protein n=1 Tax=Tribonema mi... [more]
A0A835ZCT3_9STRA6.540e-11343.98FirrV-1-B50 n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A6C0LW13_9ZZZZ2.620e-7734.79Uncharacterized protein n=1 Tax=viral metagenome T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9contigS-firma_M_contig9:53392..54765 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeViruses
Seed ortholog score701.8
Seed ortholog evalue2.1e-199
Seed eggNOG ortholog654926.Q8QNG3_ESV1K
GOsGO:0005575,GO:0019012
EggNOG free text desc.Large eukaryotic DNA virus major capsid protein
EggNOG OGs4QAX7@10239,4QXNA@35237
COG Functional cat.S
Best tax leveldsDNA viruses, no RNA stage
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-116 Major Capsid Protein
Ec32 orthologEc-06_005670.1
Exons1
Model size1374
Cds size1374
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828721.5853262-CDS-S-firma_M_contig9:53391..547651622828721.5853262-CDS-S-firma_M_contig9:53391..54765Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9 53392..54765 +
1697105122.182253-CDS-S-firma_M_contig9:53391..547651697105122.182253-CDS-S-firma_M_contig9:53391..54765Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9 53392..54765 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9.19921.1prot_S-firma_M_contig9.19921.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9 53392..54765 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9.19921.1

>prot_S-firma_M_contig9.19921.1 ID=prot_S-firma_M_contig9.19921.1|Name=mRNA_S-firma_M_contig9.19921.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=458bp
GGGVIQIAAQGRQNQHLNGNPDMTLFKTVHKRYTNFAEDLEENDFSAGTV
GFGQKVSANVSRYGDLVSDIMLEVSLPPIAASTTVMDASGNAVADADKAA
YWVNAIGYAIVSEIQIEIGGTEVDTLYPEWMFFWEEMTQRPGARLGEQIG
KFAYSSDVEEDMIEFASMARTLYVPIPFWFNKYFMEHGLSIPLIALTYHE
IKVKVTFRPLAECCCVVYRDTDAMHGDFWALAENKIPLNATSGSTLVASD
MDAKLLISYVYLDVEERQAFAAVEHEYLITTTQRQMHAITSAGSASDQIK
LYFNHPSNCLSWFIRPTDWMTNRRRYSVGHQDSFDFSLKRDSDVSVWGDV
TDPVRCASLSLNGHARWPDNLPGMFFRQTQPIMKWPNVSNGYMYVFSFSS
QGGVWQPTSTLNMSRIDHVQLELKYGTSIPTSDVFVFAESYNLLVVKDGM
GGVKYSN*
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mRNA from alignment at S-firma_M_contig9:53392..54765+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9.19921.1 ID=mRNA_S-firma_M_contig9.19921.1|Name=mRNA_S-firma_M_contig9.19921.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1374bp|location=Sequence derived from alignment at S-firma_M_contig9:53392..54765+ (Sphaerotrichia firma Sfir_13m male)
GGAGGCGGAGTCATTCAAATTGCGGCCCAAGGGCGCCAGAACCAACACCT GAACGGTAACCCTGACATGACTCTGTTCAAGACGGTGCACAAGCGTTACA CCAACTTTGCGGAGGACCTGGAGGAGAACGACTTCAGCGCGGGAACCGTT GGTTTCGGCCAGAAGGTGAGCGCCAACGTGTCTCGTTACGGCGACCTCGT GTCTGACATCATGCTGGAGGTCTCCCTTCCGCCTATCGCGGCTTCGACGA CTGTGATGGACGCGTCTGGCAACGCCGTGGCCGACGCCGACAAGGCGGCT TACTGGGTGAACGCCATCGGATACGCCATCGTCTCCGAGATTCAGATCGA GATCGGTGGCACCGAGGTGGACACTCTGTACCCGGAGTGGATGTTCTTCT GGGAGGAGATGACTCAGCGCCCGGGTGCTCGCCTTGGTGAGCAGATCGGA AAGTTCGCTTACTCGAGCGACGTCGAGGAGGACATGATTGAGTTCGCCTC GATGGCCCGTACGCTCTACGTGCCGATCCCCTTCTGGTTCAACAAGTACT TCATGGAGCACGGCCTCTCCATCCCTCTCATCGCCCTGACCTACCACGAG ATCAAGGTCAAGGTCACCTTCCGCCCCCTGGCCGAGTGCTGCTGCGTCGT GTACAGGGACACCGACGCCATGCACGGTGACTTCTGGGCGCTCGCCGAGA ACAAGATCCCCCTCAACGCCACCTCGGGATCCACGCTCGTCGCCTCCGAC ATGGACGCCAAGCTTCTCATCTCCTACGTCTACCTCGACGTCGAGGAGCG CCAGGCCTTCGCTGCCGTCGAGCACGAGTACCTCATCACCACCACTCAGC GCCAGATGCACGCCATCACCAGCGCTGGATCCGCCTCCGACCAGATCAAG TTGTACTTCAACCACCCCTCCAACTGCCTCTCGTGGTTCATCCGACCCAC CGACTGGATGACCAACCGCCGCCGGTACTCCGTCGGACACCAGGACTCCT TCGACTTCTCCCTCAAGAGGGACTCCGACGTTTCCGTGTGGGGGGATGTC ACGGATCCTGTCCGTTGTGCCTCTCTGAGTCTGAATGGCCATGCACGTTG GCCGGACAACCTGCCGGGGATGTTCTTCCGGCAGACGCAGCCCATCATGA AGTGGCCCAACGTGTCCAACGGGTACATGTACGTCTTCTCCTTCTCCTCG CAGGGAGGCGTCTGGCAGCCGACTTCCACCCTCAACATGTCGCGCATCGA CCACGTCCAGCTCGAGCTCAAGTACGGAACCAGCATCCCCACCTCCGACG TCTTCGTGTTTGCTGAGTCGTATAATCTGCTCGTGGTTAAGGATGGTATG GGCGGGGTAAAATACAGTAACTAA
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Coding sequence (CDS) from alignment at S-firma_M_contig9:53392..54765+

>mRNA_S-firma_M_contig9.19921.1 ID=mRNA_S-firma_M_contig9.19921.1|Name=mRNA_S-firma_M_contig9.19921.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=2748bp|location=Sequence derived from alignment at S-firma_M_contig9:53392..54765+ (Sphaerotrichia firma Sfir_13m male)
GGAGGCGGAGTCATTCAAATTGCGGCCCAAGGGCGCCAGAACCAACACCT
GAACGGTAACCCTGACATGACTCTGTTCAAGACGGTGCACAAGCGTTACA
CCAACTTTGCGGAGGACCTGGAGGAGAACGACTTCAGCGCGGGAACCGTT
GGTTTCGGCCAGAAGGTGAGCGCCAACGTGTCTCGTTACGGCGACCTCGT
GTCTGACATCATGCTGGAGGTCTCCCTTCCGCCTATCGCGGCTTCGACGA
CTGTGATGGACGCGTCTGGCAACGCCGTGGCCGACGCCGACAAGGCGGCT
TACTGGGTGAACGCCATCGGATACGCCATCGTCTCCGAGATTCAGATCGA
GATCGGTGGCACCGAGGTGGACACTCTGTACCCGGAGTGGATGTTCTTCT
GGGAGGAGATGACTCAGCGCCCGGGTGCTCGCCTTGGTGAGCAGATCGGA
AAGTTCGCTTACTCGAGCGACGTCGAGGAGGACATGATTGAGTTCGCCTC
GATGGCCCGTACGCTCTACGTGCCGATCCCCTTCTGGTTCAACAAGTACT
TCATGGAGCACGGCCTCTCCATCCCTCTCATCGCCCTGACCTACCACGAG
ATCAAGGTCAAGGTCACCTTCCGCCCCCTGGCCGAGTGCTGCTGCGTCGT
GTACAGGGACACCGACGCCATGCACGGTGACTTCTGGGCGCTCGCCGAGA
ACAAGATCCCCCTCAACGCCACCTCGGGATCCACGCTCGTCGCCTCCGAC
ATGGACGCCAAGCTTCTCATCTCCTACGTCTACCTCGACGTCGAGGAGCG
CCAGGCCTTCGCTGCCGTCGAGCACGAGTACCTCATCACCACCACTCAGC
GCCAGATGCACGCCATCACCAGCGCTGGATCCGCCTCCGACCAGATCAAG
TTGTACTTCAACCACCCCTCCAACTGCCTCTCGTGGTTCATCCGACCCAC
CGACTGGATGACCAACCGCCGCCGGTACTCCGTCGGACACCAGGACTCCT
TCGACTTCTCCCTCAAGAGGGACTCCGACGTTTCCGTGTGGGGGGATGTC
ACGGATCCTGTCCGTTGTGCCTCTCTGAGTCTGAATGGCCATGCACGTTG
GCCGGACAACCTGCCGGGGATGTTCTTCCGGCAGACGCAGCCCATCATGA
AGTGGCCCAACGTGTCCAACGGGTACATGTACGTCTTCTCCTTCTCCTCG
CAGGGAGGCGTCTGGCAGCCGACTTCCACCCTCAACATGTCGCGCATCGA
CCACGTCCAGCTCGAGCTCAAGTACGGAACCAGCATCCCCACCTCCGACG
TCTTCGTGTTTGCTGAGTCGTATAATCTGCTCGTGGTTAAGGATGGTATG
GGCGGGGTAAAATACAGTAACTAAGGAGGCGGAGTCATTCAAATTGCGGC
CCAAGGGCGCCAGAACCAACACCTGAACGGTAACCCTGACATGACTCTGT
TCAAGACGGTGCACAAGCGTTACACCAACTTTGCGGAGGACCTGGAGGAG
AACGACTTCAGCGCGGGAACCGTTGGTTTCGGCCAGAAGGTGAGCGCCAA
CGTGTCTCGTTACGGCGACCTCGTGTCTGACATCATGCTGGAGGTCTCCC
TTCCGCCTATCGCGGCTTCGACGACTGTGATGGACGCGTCTGGCAACGCC
GTGGCCGACGCCGACAAGGCGGCTTACTGGGTGAACGCCATCGGATACGC
CATCGTCTCCGAGATTCAGATCGAGATCGGTGGCACCGAGGTGGACACTC
TGTACCCGGAGTGGATGTTCTTCTGGGAGGAGATGACTCAGCGCCCGGGT
GCTCGCCTTGGTGAGCAGATCGGAAAGTTCGCTTACTCGAGCGACGTCGA
GGAGGACATGATTGAGTTCGCCTCGATGGCCCGTACGCTCTACGTGCCGA
TCCCCTTCTGGTTCAACAAGTACTTCATGGAGCACGGCCTCTCCATCCCT
CTCATCGCCCTGACCTACCACGAGATCAAGGTCAAGGTCACCTTCCGCCC
CCTGGCCGAGTGCTGCTGCGTCGTGTACAGGGACACCGACGCCATGCACG
GTGACTTCTGGGCGCTCGCCGAGAACAAGATCCCCCTCAACGCCACCTCG
GGATCCACGCTCGTCGCCTCCGACATGGACGCCAAGCTTCTCATCTCCTA
CGTCTACCTCGACGTCGAGGAGCGCCAGGCCTTCGCTGCCGTCGAGCACG
AGTACCTCATCACCACCACTCAGCGCCAGATGCACGCCATCACCAGCGCT
GGATCCGCCTCCGACCAGATCAAGTTGTACTTCAACCACCCCTCCAACTG
CCTCTCGTGGTTCATCCGACCCACCGACTGGATGACCAACCGCCGCCGGT
ACTCCGTCGGACACCAGGACTCCTTCGACTTCTCCCTCAAGAGGGACTCC
GACGTTTCCGTGTGGGGGGATGTCACGGATCCTGTCCGTTGTGCCTCTCT
GAGTCTGAATGGCCATGCACGTTGGCCGGACAACCTGCCGGGGATGTTCT
TCCGGCAGACGCAGCCCATCATGAAGTGGCCCAACGTGTCCAACGGGTAC
ATGTACGTCTTCTCCTTCTCCTCGCAGGGAGGCGTCTGGCAGCCGACTTC
CACCCTCAACATGTCGCGCATCGACCACGTCCAGCTCGAGCTCAAGTACG
GAACCAGCATCCCCACCTCCGACGTCTTCGTGTTTGCTGAGTCGTATAAT
CTGCTCGTGGTTAAGGATGGTATGGGCGGGGTAAAATACAGTAACTAA
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