mRNA_S-firma_M_contig8980.19890.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig8980.19890.1
Unique NamemRNA_S-firma_M_contig8980.19890.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig8980.19890.1 vs. uniprot
Match: A0A177NK95_9GAMM (Alkene reductase n=3 Tax=Methylomonas TaxID=416 RepID=A0A177NK95_9GAMM)

HSP 1 Score: 72.0 bits (175), Expect = 9.860e-14
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 SHPAFHGGEPQVAPSAIKLNADYIHTPEGKKPHETPRALE 120
            SH +FHGG+P VAPSAIKLN DYIHTP GK+P+ETPRALE
Sbjct:  107 SHSSFHGGQPAVAPSAIKLNGDYIHTPLGKQPYETPRALE 146
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BLAST of mRNA_S-firma_M_contig8980.19890.1 vs. uniprot
Match: A0A5B1CE00_9BACT (N-ethylmaleimide reductase n=1 Tax=Rubripirellula obstinata TaxID=406547 RepID=A0A5B1CE00_9BACT)

HSP 1 Score: 71.2 bits (173), Expect = 1.890e-13
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 SHPAFHGGEPQVAPSAIKLNADYIHTPEGKKPHETPRALE 120
            SHP+FH GE  VAPSAIK+NA+YIHTP+GK+ HETPRALE
Sbjct:  109 SHPSFHNGEKHVAPSAIKINAEYIHTPKGKEDHETPRALE 148
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BLAST of mRNA_S-firma_M_contig8980.19890.1 vs. uniprot
Match: A0A350KC01_9PLAN (Alkene reductase (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350KC01_9PLAN)

HSP 1 Score: 68.2 bits (165), Expect = 5.540e-13
Identity = 29/40 (72.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    1 SHPAFHGGEPQVAPSAIKLNADYIHTPEGKKPHETPRALE 120
            SHP+FH GE  VAPSAI ++A+YIHTP+GK+PHE PRALE
Sbjct:  110 SHPSFHNGEKHVAPSAIAIDAEYIHTPKGKEPHEVPRALE 149
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BLAST of mRNA_S-firma_M_contig8980.19890.1 vs. uniprot
Match: A0A6N9J0F4_9BACT (Alkene reductase n=1 Tax=Nitrospinae bacterium TaxID=2026769 RepID=A0A6N9J0F4_9BACT)

HSP 1 Score: 69.7 bits (169), Expect = 6.720e-13
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 SHPAFHGGEPQVAPSAIKLNADYIHTPEGKKPHETPRAL 117
            SH AFH GEP VAPSAIKLN +YIHTP+GKK HETPR L
Sbjct:  110 SHSAFHNGEPAVAPSAIKLNGEYIHTPQGKKDHETPREL 148
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BLAST of mRNA_S-firma_M_contig8980.19890.1 vs. uniprot
Match: A0A845X267_9CYAN (Alkene reductase n=1 Tax=Spirulina sp. SIO3F2 TaxID=2607816 RepID=A0A845X267_9CYAN)

HSP 1 Score: 68.9 bits (167), Expect = 1.280e-12
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 SHPAFHGGEPQVAPSAIKLNADYIHTPEGKKPHETPRAL 117
            SH +FH GE  VAPSAIK+N DYIHTP+GK+PHETPRAL
Sbjct:  108 SHSSFHNGESAVAPSAIKINEDYIHTPKGKEPHETPRAL 146
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BLAST of mRNA_S-firma_M_contig8980.19890.1 vs. uniprot
Match: A0A517VLA4_9PLAN (N-ethylmaleimide reductase n=9 Tax=Planctomycetaceae TaxID=126 RepID=A0A517VLA4_9PLAN)

HSP 1 Score: 68.2 bits (165), Expect = 2.420e-12
Identity = 29/40 (72.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    1 SHPAFHGGEPQVAPSAIKLNADYIHTPEGKKPHETPRALE 120
            SHP+FH GE  VAPSAI ++A+YIHTP+GK+PHE PRALE
Sbjct:  110 SHPSFHNGEKHVAPSAIPIDAEYIHTPKGKEPHEVPRALE 149
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BLAST of mRNA_S-firma_M_contig8980.19890.1 vs. uniprot
Match: A0A4R3XKI8_METMH (NADH:flavin oxidoreductase/NADH oxidase family protein n=1 Tax=Methylomonas methanica TaxID=421 RepID=A0A4R3XKI8_METMH)

HSP 1 Score: 66.2 bits (160), Expect = 4.200e-12
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 SHPAFHGGEPQVAPSAIKLNADYIHTPEGKKPHETPRALE 120
            SH  FHGGEP VAPSAI +N DYIHTP GK+ +ETPRALE
Sbjct:  107 SHSNFHGGEPAVAPSAIAINGDYIHTPTGKEVYETPRALE 146
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BLAST of mRNA_S-firma_M_contig8980.19890.1 vs. uniprot
Match: F9ZXV1_METMM (12-oxophytodienoate reductase n=1 Tax=Methylomonas methanica (strain MC09) TaxID=857087 RepID=F9ZXV1_METMM)

HSP 1 Score: 67.4 bits (163), Expect = 4.510e-12
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 SHPAFHGGEPQVAPSAIKLNADYIHTPEGKKPHETPRALE 120
            SH +FHGGEP VAPSAI +N DYIHTP GK+ +ETPRALE
Sbjct:  107 SHCSFHGGEPAVAPSAIAINGDYIHTPNGKEAYETPRALE 146
[Close]
BLAST of mRNA_S-firma_M_contig8980.19890.1 vs. uniprot
Match: A0A5C6ACG9_9BACT (N-ethylmaleimide reductase n=1 Tax=Botrimarina colliarenosi TaxID=2528001 RepID=A0A5C6ACG9_9BACT)

HSP 1 Score: 67.4 bits (163), Expect = 4.630e-12
Identity = 31/40 (77.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 SHPAFHGGEPQVAPSAIKLNADYIHTPEGKKPHETPRALE 120
            SHP FH GEPQVAPSAIK+  D   TPEGKKPH TPRALE
Sbjct:  108 SHPDFHDGEPQVAPSAIKIEGDEARTPEGKKPHVTPRALE 147
[Close]
BLAST of mRNA_S-firma_M_contig8980.19890.1 vs. uniprot
Match: A0A5S9IUA8_9BACT (Alkene reductase n=1 Tax=Candidatus Uabimicrobium amorphum TaxID=2596890 RepID=A0A5S9IUA8_9BACT)

HSP 1 Score: 67.0 bits (162), Expect = 6.240e-12
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 SHPAFHGGEPQVAPSAIKLNADYIHTPEGKKPHETPRAL 117
            SH +FH GEP VAPSAIK+N +YIHT EGK+PHE PRAL
Sbjct:  106 SHSSFHNGEPAVAPSAIKINEEYIHTAEGKQPHEVPRAL 144
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig8980.19890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A177NK95_9GAMM9.860e-1480.00Alkene reductase n=3 Tax=Methylomonas TaxID=416 Re... [more]
A0A5B1CE00_9BACT1.890e-1377.50N-ethylmaleimide reductase n=1 Tax=Rubripirellula ... [more]
A0A350KC01_9PLAN5.540e-1372.50Alkene reductase (Fragment) n=1 Tax=Planctomycetac... [more]
A0A6N9J0F4_9BACT6.720e-1379.49Alkene reductase n=1 Tax=Nitrospinae bacterium Tax... [more]
A0A845X267_9CYAN1.280e-1276.92Alkene reductase n=1 Tax=Spirulina sp. SIO3F2 TaxI... [more]
A0A517VLA4_9PLAN2.420e-1272.50N-ethylmaleimide reductase n=9 Tax=Planctomycetace... [more]
A0A4R3XKI8_METMH4.200e-1275.00NADH:flavin oxidoreductase/NADH oxidase family pro... [more]
F9ZXV1_METMM4.510e-1275.0012-oxophytodienoate reductase n=1 Tax=Methylomonas... [more]
A0A5C6ACG9_9BACT4.630e-1277.50N-ethylmaleimide reductase n=1 Tax=Botrimarina col... [more]
A0A5S9IUA8_9BACT6.240e-1274.36Alkene reductase n=1 Tax=Candidatus Uabimicrobium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig8980contigS-firma_M_contig8980:1..120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score70.9
Seed ortholog evalue1.6e-10
Seed eggNOG ortholog344747.PM8797T_13308
KEGG rclassRC00250
KEGG koko:K10680
KEGG ReactionR08014,R08017,R08042
KEGG Pathwayko00633,ko01120,map00633,map01120
EggNOG free text desc.COG1902 NADH flavin oxidoreductases, Old Yellow Enzyme family
EggNOG OGs2IYAT@203682,COG1902@1,COG1902@2
COG Functional cat.C
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size120
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828719.6800208-CDS-S-firma_M_contig8980:0..1201622828719.6800208-CDS-S-firma_M_contig8980:0..120Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig8980 1..120 -
1697105121.301186-CDS-S-firma_M_contig8980:0..1201697105121.301186-CDS-S-firma_M_contig8980:0..120Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig8980 1..120 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig8980.19890.1prot_S-firma_M_contig8980.19890.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig8980 1..120 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig8980.19890.1

>prot_S-firma_M_contig8980.19890.1 ID=prot_S-firma_M_contig8980.19890.1|Name=mRNA_S-firma_M_contig8980.19890.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=40bp
SHPAFHGGEPQVAPSAIKLNADYIHTPEGKKPHETPRALE
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mRNA from alignment at S-firma_M_contig8980:1..120-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig8980.19890.1 ID=mRNA_S-firma_M_contig8980.19890.1|Name=mRNA_S-firma_M_contig8980.19890.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=120bp|location=Sequence derived from alignment at S-firma_M_contig8980:1..120- (Sphaerotrichia firma Sfir_13m male)
TCCCACCCGGCCTTCCACGGCGGCGAGCCCCAGGTCGCGCCCTCGGCGAT
CAAGCTCAACGCCGATTACATCCACACGCCCGAGGGGAAGAAGCCGCACG
AGACGCCCCGCGCTCTCGAG
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Coding sequence (CDS) from alignment at S-firma_M_contig8980:1..120-

>mRNA_S-firma_M_contig8980.19890.1 ID=mRNA_S-firma_M_contig8980.19890.1|Name=mRNA_S-firma_M_contig8980.19890.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=240bp|location=Sequence derived from alignment at S-firma_M_contig8980:1..120- (Sphaerotrichia firma Sfir_13m male)
TCCCACCCGGCCTTCCACGGCGGCGAGCCCCAGGTCGCGCCCTCGGCGAT
CAAGCTCAACGCCGATTACATCCACACGCCCGAGGGGAAGAAGCCGCACG
AGACGCCCCGCGCTCTCGAGTCCCACCCGGCCTTCCACGGCGGCGAGCCC
CAGGTCGCGCCCTCGGCGATCAAGCTCAACGCCGATTACATCCACACGCC
CGAGGGGAAGAAGCCGCACGAGACGCCCCGCGCTCTCGAG
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