mRNA_S-firma_M_contig8958.19860.1 (mRNA) Sphaerotrichia firma Sfir_13m male
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Overview
Homology
BLAST of mRNA_S-firma_M_contig8958.19860.1 vs. uniprot
Match: A0A6H5KV41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV41_9PHAE) HSP 1 Score: 60.1 bits (144), Expect = 7.690e-8 Identity = 36/107 (33.64%), Postives = 50/107 (46.73%), Query Frame = 2
Query: 8 KYEHQGCFEISGAE-------------DDGDGEFTAAEMTPVVCLNACTTKTAFRTPYFALTQGHGCFCGDPRTA----DTQVGACEMPCSGDSSFPCGGARSYDLY 277
++EH GC +++ E D G F +MTP C C + FA+T+G C C A D + G C+ PC+GDSS PCGG S+D+Y
Sbjct: 50 RFEHVGCLKLAEEEMVSLGRIKTKAEADTIPGVFGRDDMTPQECAAICEDRGQ---DGFAVTRGDRCTCFAEVDAGIFDDRKGGVCDAPCTGDSSQPCGGVDSFDVY 153
BLAST of mRNA_S-firma_M_contig8958.19860.1 vs. uniprot
Match: A0A6H5KL41_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL41_9PHAE) HSP 1 Score: 58.2 bits (139), Expect = 1.640e-7 Identity = 37/110 (33.64%), Postives = 52/110 (47.27%), Query Frame = 2
Query: 11 YEHQGCFEISGAE-------------DDGDGEFTAAEMTPVVCLNACTTKTAFRTPYFALTQGHGCFCGDPRTADTQV------GACEMPCSGDSSFPCGGARSYDLYMV 283
+EH GC +++ E D G F +MTP+ C C + FA+T+G C C ADT + G C+ PC+GDSS PCGG S+D+Y +
Sbjct: 84 FEHVGCLKLAEEEMVSLRRIKTKAEADIIPGVFGRDDMTPLGCAAICEGRGQ---DGFAVTRGDLCTCFTE--ADTGIFDDRKGGVCDAPCTGDSSQPCGGVDSFDVYQL 188
BLAST of mRNA_S-firma_M_contig8958.19860.1 vs. uniprot
Match: A0A1D2VBX3_9ASCO (WSC domain-containing protein n=1 Tax=Ascoidea rubescens DSM 1968 TaxID=1344418 RepID=A0A1D2VBX3_9ASCO) HSP 1 Score: 57.4 bits (137), Expect = 3.270e-7 Identity = 28/91 (30.77%), Postives = 44/91 (48.35%), Query Frame = 2
Query: 5 YKYEHQGCFEISGAEDDGDGEFTAAEMTPVVCLNACTTKTAFRTPYFALTQGHGCFCGDPRTADTQVGACEMPCSGDSSFPCGGARSYDLY 277
Y Y GC+ + G +T TP C C P++ALT G+ C+CG+ + + G C PC+G + CGG+ S+++Y
Sbjct: 35 YTYSGLGCYSSLPSGYVSRGTYTY--QTPSYCEQQCQDY-----PFYALTNGNQCYCGNSGPSISADGTCTSPCTGYGTITCGGSDSFEIY 118
BLAST of mRNA_S-firma_M_contig8958.19860.1 vs. uniprot
Match: D8LKF8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKF8_ECTSI) HSP 1 Score: 57.0 bits (136), Expect = 9.990e-7 Identity = 36/107 (33.64%), Postives = 49/107 (45.79%), Query Frame = 2
Query: 8 KYEHQGCFEISGAE-------------DDGDGEFTAAEMTPVVCLNACTTKTAFRTPYFALTQGHGCFCGDPRTA----DTQVGACEMPCSGDSSFPCGGARSYDLY 277
++EH GC +++ E D G F +MTP C C FA+T+G C C A D + G C+ PC+GDSS PCGG S+D+Y
Sbjct: 1449 RFEHVGCLKLTEEEMISLGRIETKAEADIIPGVFGRDDMTPQQCAVICEGGGQ---DGFAVTRGDLCTCFAEADAGIFEDRKGGVCDAPCTGDSSQPCGGVGSFDVY 1552
BLAST of mRNA_S-firma_M_contig8958.19860.1 vs. uniprot
Match: A0A1D2VI60_9ASCO (WSC domain-containing protein n=1 Tax=Ascoidea rubescens DSM 1968 TaxID=1344418 RepID=A0A1D2VI60_9ASCO) HSP 1 Score: 56.6 bits (135), Expect = 1.150e-6 Identity = 30/91 (32.97%), Postives = 40/91 (43.96%), Query Frame = 2
Query: 5 YKYEHQGCFEISGAEDDGDGEFTAAEMTPVVCLNACTTKTAFRTPYFALTQGHGCFCGDPRTADTQVGACEMPCSGDSSFPCGGARSYDLY 277
Y YE GC+ S D + T T C C P+FALT G+ C CGD + G C C+G + CGG SY+++
Sbjct: 34 YTYEDLGCY--SSLPDGYVSKGTYTFQTSGYCQGQCLDY-----PFFALTNGNKCLCGDEAPSGDADGTCTSSCTGYGTLTCGGKTSYEIF 117
BLAST of mRNA_S-firma_M_contig8958.19860.1 vs. uniprot
Match: D8LKF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKF2_ECTSI) HSP 1 Score: 56.6 bits (135), Expect = 1.290e-6 Identity = 36/107 (33.64%), Postives = 51/107 (47.66%), Query Frame = 2
Query: 8 KYEHQGCFEISGAE-------------DDGDGEFTAAEMTPVVCLNACTTKTAFRTPYFALTQGHGCFC---GDPRTAD-TQVGACEMPCSGDSSFPCGGARSYDLY 277
++EH GC +++ E D G F +MTP C C FA+T+G+ C C D D ++ G C+ PC+GDSS PCGG S+D+Y
Sbjct: 403 RFEHVGCLKLAEEEMVSLGRIETKAEADIIPGVFGRDDMTPQQCAAICE---GVGQDGFAVTRGNLCTCFAEADAGIFDGSKGGVCDAPCTGDSSQPCGGVGSFDVY 506
BLAST of mRNA_S-firma_M_contig8958.19860.1 vs. uniprot
Match: UPI0020079FE7 (uncharacterized protein n=1 Tax=Daldinia caldariorum TaxID=326644 RepID=UPI0020079FE7) HSP 1 Score: 56.2 bits (134), Expect = 1.720e-6 Identity = 35/108 (32.41%), Postives = 50/108 (46.30%), Query Frame = 2
Query: 23 GCFEISGAEDDG-----DGEFTAA-------EMTPVVCLNACTT-----KTAFRTPYFALTQGHGCFCGDPRTADTQ---VGACEMPCSGDSSFPCGGARSYDLYMVV 286
GC+ +G DG+ A ++T CL ACT KT+ L+ G CFCG A+ + +GAC+MPC+GDS+ CGG + +Y V
Sbjct: 78 GCYSRGAGSPEGNLFGKDGDDYAVPTKVPPDKLTISACLEACTALIPPKKTSDHYGLVGLSNGSECFCGLELVAEARKLTLGACDMPCTGDSTLSCGGRDTVAVYRFV 185
BLAST of mRNA_S-firma_M_contig8958.19860.1 vs. uniprot
Match: A0A6A4JVI9_APOLU (Uncharacterized protein n=1 Tax=Apolygus lucorum TaxID=248454 RepID=A0A6A4JVI9_APOLU) HSP 1 Score: 53.5 bits (127), Expect = 1.540e-5 Identity = 30/90 (33.33%), Postives = 42/90 (46.67%), Query Frame = 2
Query: 23 GCFEISGAEDD---GDGEFTAAEMTPVVCLNACTTKTAFRTPYFALTQGHGCFCGDPRTADTQVG--ACEMPCSGDSSFPCGGARSYDLY 277
GC+E S + D D ++ +TP C+ C K +R Y + G+ CFC A +V C +PCSGD F CGG +Y
Sbjct: 233 GCYETSSYQRDFLPNDEDYFTKLLTPEFCVGYCYHK-GYR--YAGMESGNSCFCATGIDAVHKVNDLQCNVPCSGDKKFKCGGKGKLSVY 319
BLAST of mRNA_S-firma_M_contig8958.19860.1 vs. uniprot
Match: A0A4Q1BWX3_TREME (Uncharacterized protein n=1 Tax=Tremella mesenterica TaxID=5217 RepID=A0A4Q1BWX3_TREME) HSP 1 Score: 51.2 bits (121), Expect = 9.750e-5 Identity = 24/73 (32.88%), Postives = 38/73 (52.05%), Query Frame = 2
Query: 68 FTAAEMTPVVCLNACTTKTAFRTPYFALTQGHGCFCGD---PRTADTQVGACEMPCSGDSSFPCGGARSYDLY 277
FT+ MTP +C+ AC +K + + C+CG+ + +T G C M CSG+S + CGG+ + Y
Sbjct: 473 FTSDLMTPTLCIQACLSKNY---TFAGVEYSKECYCGNVYNKGSINTTEGGCNMACSGNSLYTCGGSSRLNTY 542 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig8958.19860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_M_contig8958.19860.1 >prot_S-firma_M_contig8958.19860.1 ID=prot_S-firma_M_contig8958.19860.1|Name=mRNA_S-firma_M_contig8958.19860.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=110bp RLQVRAPGVLRDQRGGGRRGWRVHRCRDDSGGVFERVHHEDGLPNAVLCAback to top mRNA from alignment at S-firma_M_contig8958:252..1095+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_M_contig8958.19860.1 ID=mRNA_S-firma_M_contig8958.19860.1|Name=mRNA_S-firma_M_contig8958.19860.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=844bp|location=Sequence derived from alignment at S-firma_M_contig8958:252..1095+ (Sphaerotrichia firma Sfir_13m male)back to top Coding sequence (CDS) from alignment at S-firma_M_contig8958:252..1095+ >mRNA_S-firma_M_contig8958.19860.1 ID=mRNA_S-firma_M_contig8958.19860.1|Name=mRNA_S-firma_M_contig8958.19860.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=660bp|location=Sequence derived from alignment at S-firma_M_contig8958:252..1095+ (Sphaerotrichia firma Sfir_13m male)back to top |