mRNA_S-firma_M_contig8958.19860.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig8958.19860.1
Unique NamemRNA_S-firma_M_contig8958.19860.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
BLAST of mRNA_S-firma_M_contig8958.19860.1 vs. uniprot
Match: A0A6H5KV41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV41_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 7.690e-8
Identity = 36/107 (33.64%), Postives = 50/107 (46.73%), Query Frame = 2
Query:    8 KYEHQGCFEISGAE-------------DDGDGEFTAAEMTPVVCLNACTTKTAFRTPYFALTQGHGCFCGDPRTA----DTQVGACEMPCSGDSSFPCGGARSYDLY 277
            ++EH GC +++  E             D   G F   +MTP  C   C  +       FA+T+G  C C     A    D + G C+ PC+GDSS PCGG  S+D+Y
Sbjct:   50 RFEHVGCLKLAEEEMVSLGRIKTKAEADTIPGVFGRDDMTPQECAAICEDRGQ---DGFAVTRGDRCTCFAEVDAGIFDDRKGGVCDAPCTGDSSQPCGGVDSFDVY 153          
BLAST of mRNA_S-firma_M_contig8958.19860.1 vs. uniprot
Match: A0A6H5KL41_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL41_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.640e-7
Identity = 37/110 (33.64%), Postives = 52/110 (47.27%), Query Frame = 2
Query:   11 YEHQGCFEISGAE-------------DDGDGEFTAAEMTPVVCLNACTTKTAFRTPYFALTQGHGCFCGDPRTADTQV------GACEMPCSGDSSFPCGGARSYDLYMV 283
            +EH GC +++  E             D   G F   +MTP+ C   C  +       FA+T+G  C C     ADT +      G C+ PC+GDSS PCGG  S+D+Y +
Sbjct:   84 FEHVGCLKLAEEEMVSLRRIKTKAEADIIPGVFGRDDMTPLGCAAICEGRGQ---DGFAVTRGDLCTCFTE--ADTGIFDDRKGGVCDAPCTGDSSQPCGGVDSFDVYQL 188          
BLAST of mRNA_S-firma_M_contig8958.19860.1 vs. uniprot
Match: A0A1D2VBX3_9ASCO (WSC domain-containing protein n=1 Tax=Ascoidea rubescens DSM 1968 TaxID=1344418 RepID=A0A1D2VBX3_9ASCO)

HSP 1 Score: 57.4 bits (137), Expect = 3.270e-7
Identity = 28/91 (30.77%), Postives = 44/91 (48.35%), Query Frame = 2
Query:    5 YKYEHQGCFEISGAEDDGDGEFTAAEMTPVVCLNACTTKTAFRTPYFALTQGHGCFCGDPRTADTQVGACEMPCSGDSSFPCGGARSYDLY 277
            Y Y   GC+    +     G +T    TP  C   C        P++ALT G+ C+CG+   + +  G C  PC+G  +  CGG+ S+++Y
Sbjct:   35 YTYSGLGCYSSLPSGYVSRGTYTY--QTPSYCEQQCQDY-----PFYALTNGNQCYCGNSGPSISADGTCTSPCTGYGTITCGGSDSFEIY 118          
BLAST of mRNA_S-firma_M_contig8958.19860.1 vs. uniprot
Match: D8LKF8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKF8_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 9.990e-7
Identity = 36/107 (33.64%), Postives = 49/107 (45.79%), Query Frame = 2
Query:    8 KYEHQGCFEISGAE-------------DDGDGEFTAAEMTPVVCLNACTTKTAFRTPYFALTQGHGCFCGDPRTA----DTQVGACEMPCSGDSSFPCGGARSYDLY 277
            ++EH GC +++  E             D   G F   +MTP  C   C          FA+T+G  C C     A    D + G C+ PC+GDSS PCGG  S+D+Y
Sbjct: 1449 RFEHVGCLKLTEEEMISLGRIETKAEADIIPGVFGRDDMTPQQCAVICEGGGQ---DGFAVTRGDLCTCFAEADAGIFEDRKGGVCDAPCTGDSSQPCGGVGSFDVY 1552          
BLAST of mRNA_S-firma_M_contig8958.19860.1 vs. uniprot
Match: A0A1D2VI60_9ASCO (WSC domain-containing protein n=1 Tax=Ascoidea rubescens DSM 1968 TaxID=1344418 RepID=A0A1D2VI60_9ASCO)

HSP 1 Score: 56.6 bits (135), Expect = 1.150e-6
Identity = 30/91 (32.97%), Postives = 40/91 (43.96%), Query Frame = 2
Query:    5 YKYEHQGCFEISGAEDDGDGEFTAAEMTPVVCLNACTTKTAFRTPYFALTQGHGCFCGDPRTADTQVGACEMPCSGDSSFPCGGARSYDLY 277
            Y YE  GC+  S   D    + T    T   C   C        P+FALT G+ C CGD   +    G C   C+G  +  CGG  SY+++
Sbjct:   34 YTYEDLGCY--SSLPDGYVSKGTYTFQTSGYCQGQCLDY-----PFFALTNGNKCLCGDEAPSGDADGTCTSSCTGYGTLTCGGKTSYEIF 117          
BLAST of mRNA_S-firma_M_contig8958.19860.1 vs. uniprot
Match: D8LKF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKF2_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.290e-6
Identity = 36/107 (33.64%), Postives = 51/107 (47.66%), Query Frame = 2
Query:    8 KYEHQGCFEISGAE-------------DDGDGEFTAAEMTPVVCLNACTTKTAFRTPYFALTQGHGCFC---GDPRTAD-TQVGACEMPCSGDSSFPCGGARSYDLY 277
            ++EH GC +++  E             D   G F   +MTP  C   C          FA+T+G+ C C    D    D ++ G C+ PC+GDSS PCGG  S+D+Y
Sbjct:  403 RFEHVGCLKLAEEEMVSLGRIETKAEADIIPGVFGRDDMTPQQCAAICE---GVGQDGFAVTRGNLCTCFAEADAGIFDGSKGGVCDAPCTGDSSQPCGGVGSFDVY 506          
BLAST of mRNA_S-firma_M_contig8958.19860.1 vs. uniprot
Match: UPI0020079FE7 (uncharacterized protein n=1 Tax=Daldinia caldariorum TaxID=326644 RepID=UPI0020079FE7)

HSP 1 Score: 56.2 bits (134), Expect = 1.720e-6
Identity = 35/108 (32.41%), Postives = 50/108 (46.30%), Query Frame = 2
Query:   23 GCFEISGAEDDG-----DGEFTAA-------EMTPVVCLNACTT-----KTAFRTPYFALTQGHGCFCGDPRTADTQ---VGACEMPCSGDSSFPCGGARSYDLYMVV 286
            GC+       +G     DG+  A        ++T   CL ACT      KT+       L+ G  CFCG    A+ +   +GAC+MPC+GDS+  CGG  +  +Y  V
Sbjct:   78 GCYSRGAGSPEGNLFGKDGDDYAVPTKVPPDKLTISACLEACTALIPPKKTSDHYGLVGLSNGSECFCGLELVAEARKLTLGACDMPCTGDSTLSCGGRDTVAVYRFV 185          
BLAST of mRNA_S-firma_M_contig8958.19860.1 vs. uniprot
Match: A0A6A4JVI9_APOLU (Uncharacterized protein n=1 Tax=Apolygus lucorum TaxID=248454 RepID=A0A6A4JVI9_APOLU)

HSP 1 Score: 53.5 bits (127), Expect = 1.540e-5
Identity = 30/90 (33.33%), Postives = 42/90 (46.67%), Query Frame = 2
Query:   23 GCFEISGAEDD---GDGEFTAAEMTPVVCLNACTTKTAFRTPYFALTQGHGCFCGDPRTADTQVG--ACEMPCSGDSSFPCGGARSYDLY 277
            GC+E S  + D    D ++    +TP  C+  C  K  +R  Y  +  G+ CFC     A  +V    C +PCSGD  F CGG     +Y
Sbjct:  233 GCYETSSYQRDFLPNDEDYFTKLLTPEFCVGYCYHK-GYR--YAGMESGNSCFCATGIDAVHKVNDLQCNVPCSGDKKFKCGGKGKLSVY 319          
BLAST of mRNA_S-firma_M_contig8958.19860.1 vs. uniprot
Match: A0A4Q1BWX3_TREME (Uncharacterized protein n=1 Tax=Tremella mesenterica TaxID=5217 RepID=A0A4Q1BWX3_TREME)

HSP 1 Score: 51.2 bits (121), Expect = 9.750e-5
Identity = 24/73 (32.88%), Postives = 38/73 (52.05%), Query Frame = 2
Query:   68 FTAAEMTPVVCLNACTTKTAFRTPYFALTQGHGCFCGD---PRTADTQVGACEMPCSGDSSFPCGGARSYDLY 277
            FT+  MTP +C+ AC +K      +  +     C+CG+     + +T  G C M CSG+S + CGG+   + Y
Sbjct:  473 FTSDLMTPTLCIQACLSKNY---TFAGVEYSKECYCGNVYNKGSINTTEGGCNMACSGNSLYTCGGSSRLNTY 542          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig8958.19860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KV41_9PHAE7.690e-833.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL41_9PHAE1.640e-733.64WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A1D2VBX3_9ASCO3.270e-730.77WSC domain-containing protein n=1 Tax=Ascoidea rub... [more]
D8LKF8_ECTSI9.990e-733.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1D2VI60_9ASCO1.150e-632.97WSC domain-containing protein n=1 Tax=Ascoidea rub... [more]
D8LKF2_ECTSI1.290e-633.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI0020079FE71.720e-632.41uncharacterized protein n=1 Tax=Daldinia caldarior... [more]
A0A6A4JVI9_APOLU1.540e-533.33Uncharacterized protein n=1 Tax=Apolygus lucorum T... [more]
A0A4Q1BWX3_TREME9.750e-532.88Uncharacterized protein n=1 Tax=Tremella mesenteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig8958contigS-firma_M_contig8958:252..1095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size416
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828716.5300214-CDS-S-firma_M_contig8958:251..3451622828716.5300214-CDS-S-firma_M_contig8958:251..345Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig8958 252..345 +
1697105119.26856-CDS-S-firma_M_contig8958:251..3451697105119.26856-CDS-S-firma_M_contig8958:251..345Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig8958 252..345 +
1622828716.54454-CDS-S-firma_M_contig8958:774..10101622828716.54454-CDS-S-firma_M_contig8958:774..1010Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig8958 775..1010 +
1697105119.2786965-CDS-S-firma_M_contig8958:774..10101697105119.2786965-CDS-S-firma_M_contig8958:774..1010Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig8958 775..1010 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828716.5609696-UTR-S-firma_M_contig8958:1010..10951622828716.5609696-UTR-S-firma_M_contig8958:1010..1095Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig8958 1011..1095 +
1697105119.2881835-UTR-S-firma_M_contig8958:1010..10951697105119.2881835-UTR-S-firma_M_contig8958:1010..1095Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig8958 1011..1095 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig8958.19860.1prot_S-firma_M_contig8958.19860.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig8958 252..1010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig8958.19860.1

>prot_S-firma_M_contig8958.19860.1 ID=prot_S-firma_M_contig8958.19860.1|Name=mRNA_S-firma_M_contig8958.19860.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=110bp
RLQVRAPGVLRDQRGGGRRGWRVHRCRDDSGGVFERVHHEDGLPNAVLCA
HARARLLLRRSQDRRHSSRCLRDAVQRGFILPVRRCTLVRPVHGGRVDSD
SSEVCRRRR*
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mRNA from alignment at S-firma_M_contig8958:252..1095+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig8958.19860.1 ID=mRNA_S-firma_M_contig8958.19860.1|Name=mRNA_S-firma_M_contig8958.19860.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=844bp|location=Sequence derived from alignment at S-firma_M_contig8958:252..1095+ (Sphaerotrichia firma Sfir_13m male)
CGGCTACAAGTACGAGCACCAGGGGTGCTTCGAGATCAGCGGGGCGGAGG ACGACGGGGATGGCGAGTTCACCGCTGCCGAGATGACTCCGGTGGTGAGT GTGGCACGCGGCGTTTGTTCCCGTTGAGGTGATCACGAAATATCGGCAGA CGAAGACGACCTCGCAGAATCCATTGTTGCCGGACGTCGATGACACCGCC GGTCATGAGTAGGGTGCTGTCGGGCTGAGACCCACCACGAGTCGCGTTCT TTAATAACGCCCATCACTACCTAAGCTCGATGGTTTTGTCCGGTCGAGAA AGATGATGATGATGGTGAATCTTTGCGATGCACGGCCCGTTCCTTGCAGC CAAATTGCAAATTGCTCTCCATCTTCAAGCGCAATCAATCGTCCCAGAAA ACCGCCCGCCGAACGCAGCTAGGCTAGCTCCATGTCAAACTCCTTGCCCC CGCGCTCAGCGTCCACTTTCTGAGTTATCATCCATGCAAACCGCCGTTGG TTCTTTGTCGCTTCCACCGCCAGGTGTGTTTGAACGCGTGCACCACGAAG ACGGCCTTCCGAACGCCGTACTTTGCGCTCACGCAAGGGCACGGCTGCTT CTGCGGAGATCCCAGGACCGCCGACACTCAAGTCGGTGCCTGCGAGATGC CGTGCAGCGGGGATTCATCCTTCCCGTGCGGAGGTGCACGCTCGTACGAC CTGTACATGGTGGTCGAGTAGACAGTGATAGTAGCGAAGTGTGCCGTCGT CGAAGATAGTTAGTTGACCCGTGGACACGTTGCTTTCTCGTTTTTTTCGC TGTCGTTTGTTTGTGGTTTGGAGTTTGTCGTGCCTGGTTCGTGG
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Coding sequence (CDS) from alignment at S-firma_M_contig8958:252..1095+

>mRNA_S-firma_M_contig8958.19860.1 ID=mRNA_S-firma_M_contig8958.19860.1|Name=mRNA_S-firma_M_contig8958.19860.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=660bp|location=Sequence derived from alignment at S-firma_M_contig8958:252..1095+ (Sphaerotrichia firma Sfir_13m male)
CGGCTACAAGTACGAGCACCAGGGGTGCTTCGAGATCAGCGGGGCGGAGG
ACGACGGGGATGGCGAGTTCACCGCTGCCGAGATGACTCCGGTGCGGCTA
CAAGTACGAGCACCAGGGGTGCTTCGAGATCAGCGGGGCGGAGGACGACG
GGGATGGCGAGTTCACCGCTGCCGAGATGACTCCGGTGGTGTGTTTGAAC
GCGTGCACCACGAAGACGGCCTTCCGAACGCCGTACTTTGCGCTCACGCA
AGGGCACGGCTGCTTCTGCGGAGATCCCAGGACCGCCGACACTCAAGTCG
GTGCCTGCGAGATGCCGTGCAGCGGGGATTCATCCTTCCCGTGCGGAGGT
GCACGCTCGTACGACCTGTACATGGTGGTCGAGTAGACAGTGATAGTAGC
GAAGTGTGCCGTCGTCGAAGATAGGTGTGTTTGAACGCGTGCACCACGAA
GACGGCCTTCCGAACGCCGTACTTTGCGCTCACGCAAGGGCACGGCTGCT
TCTGCGGAGATCCCAGGACCGCCGACACTCAAGTCGGTGCCTGCGAGATG
CCGTGCAGCGGGGATTCATCCTTCCCGTGCGGAGGTGCACGCTCGTACGA
CCTGTACATGGTGGTCGAGTAGACAGTGATAGTAGCGAAGTGTGCCGTCG
TCGAAGATAG
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