mRNA_S-firma_M_contig8935.19838.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig8935.19838.1
Unique NamemRNA_S-firma_M_contig8935.19838.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig8935.19838.1 vs. uniprot
Match: A0A6H5KMX5_9PHAE (Eukaryotic translation initiation factor 3 subunit I n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMX5_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 2.400e-52
Identity = 83/87 (95.40%), Postives = 87/87 (100.00%), Query Frame = 1 
Query:    1 QVLKTYKTDRPVNAAVMHPTKEHVILGGGQDAMSVTTTSSSVGKFESRFFHMIYESEFGRVKGHFGPINALAINPNGLSYASGAEDG 261
            QVLKTYKTDRPVNA+VMHPTKEHVILGGGQDAMSVTTTSS+VGKFESRFFHMIYE+EFGRVKGHFGPINALAINPNGLSYASG+EDG
Sbjct:  224 QVLKTYKTDRPVNASVMHPTKEHVILGGGQDAMSVTTTSSNVGKFESRFFHMIYETEFGRVKGHFGPINALAINPNGLSYASGSEDG 310
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BLAST of mRNA_S-firma_M_contig8935.19838.1 vs. uniprot
Match: A0A835ZF13_9STRA (Eukaryotic translation initiation factor 3 subunit I n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF13_9STRA)

HSP 1 Score: 158 bits (400), Expect = 9.880e-46
Identity = 72/87 (82.76%), Postives = 81/87 (93.10%), Query Frame = 1 
Query:    1 QVLKTYKTDRPVNAAVMHPTKEHVILGGGQDAMSVTTTSSSVGKFESRFFHMIYESEFGRVKGHFGPINALAINPNGLSYASGAEDG 261
            +VLK Y T+RPVNAAV+HPTK+H++LGGGQDAMSVTTT S VGKFE+RF+HMIYE EFGRVKGHFGPINALAINP+GLSY SGAEDG
Sbjct:  224 EVLKVYPTERPVNAAVIHPTKDHILLGGGQDAMSVTTTGSRVGKFETRFYHMIYEEEFGRVKGHFGPINALAINPDGLSYCSGAEDG 310
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BLAST of mRNA_S-firma_M_contig8935.19838.1 vs. uniprot
Match: A0A7S2RQ21_9STRA (Eukaryotic translation initiation factor 3 subunit I n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RQ21_9STRA)

HSP 1 Score: 156 bits (395), Expect = 6.200e-45
Identity = 72/85 (84.71%), Postives = 79/85 (92.94%), Query Frame = 1 
Query:    7 LKTYKTDRPVNAAVMHPTKEHVILGGGQDAMSVTTTSSSVGKFESRFFHMIYESEFGRVKGHFGPINALAINPNGLSYASGAEDG 261
            LKTYKTDRP+N AV+  TK+H+ILGGGQ+AMSVTTTS  VGKFESRFFH++YE EFGRVKGHFGPINALAINPNGLSYASGAEDG
Sbjct:  229 LKTYKTDRPINDAVISETKDHIILGGGQEAMSVTTTSGKVGKFESRFFHLVYEEEFGRVKGHFGPINALAINPNGLSYASGAEDG 313
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BLAST of mRNA_S-firma_M_contig8935.19838.1 vs. uniprot
Match: A0A7S2V5S2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5S2_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.240e-44
Identity = 69/86 (80.23%), Postives = 79/86 (91.86%), Query Frame = 1 
Query:    4 VLKTYKTDRPVNAAVMHPTKEHVILGGGQDAMSVTTTSSSVGKFESRFFHMIYESEFGRVKGHFGPINALAINPNGLSYASGAEDG 261
            VLKTYKT+RPVNAAV+ P K+HV+LGGGQ+AMSVTTT S VGKFE+RF+H++YE EFGRVKGHFGPINAL INP+G SYASGAEDG
Sbjct:   78 VLKTYKTERPVNAAVISPIKDHVLLGGGQEAMSVTTTDSRVGKFETRFYHLVYEREFGRVKGHFGPINALGINPDGKSYASGAEDG 163
[Close]
BLAST of mRNA_S-firma_M_contig8935.19838.1 vs. uniprot
Match: A0A7S2UU51_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UU51_9STRA)

HSP 1 Score: 150 bits (379), Expect = 2.100e-44
Identity = 67/85 (78.82%), Postives = 77/85 (90.59%), Query Frame = 1 
Query:    7 LKTYKTDRPVNAAVMHPTKEHVILGGGQDAMSVTTTSSSVGKFESRFFHMIYESEFGRVKGHFGPINALAINPNGLSYASGAEDG 261
            LKTYKTDRP+N AV+ PTK+H++LGGGQ+AMSVTTT+  VGKFE+RFFH++YE EFG VKGHFGPINAL INPNG SYASGAEDG
Sbjct:   61 LKTYKTDRPINDAVISPTKDHILLGGGQEAMSVTTTAGKVGKFETRFFHLVYEEEFGTVKGHFGPINALGINPNGRSYASGAEDG 145
[Close]
BLAST of mRNA_S-firma_M_contig8935.19838.1 vs. uniprot
Match: A0A7S2I7B8_9STRA (Eukaryotic translation initiation factor 3 subunit I n=4 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A7S2I7B8_9STRA)

HSP 1 Score: 152 bits (385), Expect = 2.300e-43
Identity = 67/85 (78.82%), Postives = 78/85 (91.76%), Query Frame = 1 
Query:    7 LKTYKTDRPVNAAVMHPTKEHVILGGGQDAMSVTTTSSSVGKFESRFFHMIYESEFGRVKGHFGPINALAINPNGLSYASGAEDG 261
            LKTYKT+RPVN AV+HPTK+H++LGGGQ+AMSVTTT   VGKFE+RFFH++YE EFG+VKGHFGPINAL +NPNG SYASGAEDG
Sbjct:  231 LKTYKTERPVNDAVIHPTKDHILLGGGQEAMSVTTTRGDVGKFETRFFHLVYEEEFGKVKGHFGPINALGVNPNGRSYASGAEDG 315
[Close]
BLAST of mRNA_S-firma_M_contig8935.19838.1 vs. uniprot
Match: A0A6U3VY90_9STRA (Eukaryotic translation initiation factor 3 subunit I n=2 Tax=Thalassiosirales TaxID=33847 RepID=A0A6U3VY90_9STRA)

HSP 1 Score: 150 bits (379), Expect = 1.690e-42
Identity = 69/85 (81.18%), Postives = 77/85 (90.59%), Query Frame = 1 
Query:    7 LKTYKTDRPVNAAVMHPTKEHVILGGGQDAMSVTTTSSSVGKFESRFFHMIYESEFGRVKGHFGPINALAINPNGLSYASGAEDG 261
            LKTYKTDRPVN AV+  TK+H++LGGGQ+AMSVTTTS  VGKFE+RFFH++YE EFG VKGHFGPINALAINPNG SYASGAEDG
Sbjct:  231 LKTYKTDRPVNDAVISETKDHILLGGGQEAMSVTTTSGKVGKFETRFFHLVYEEEFGSVKGHFGPINALAINPNGRSYASGAEDG 315
[Close]
BLAST of mRNA_S-firma_M_contig8935.19838.1 vs. uniprot
Match: A0A7S2NVM0_9STRA (Eukaryotic translation initiation factor 3 subunit I n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NVM0_9STRA)

HSP 1 Score: 150 bits (378), Expect = 1.990e-42
Identity = 68/85 (80.00%), Postives = 78/85 (91.76%), Query Frame = 1 
Query:    7 LKTYKTDRPVNAAVMHPTKEHVILGGGQDAMSVTTTSSSVGKFESRFFHMIYESEFGRVKGHFGPINALAINPNGLSYASGAEDG 261
            LKTY+TDRPVN AV+ PTK+H++LGGGQ+AMSVTTT+  VGKFE+RFFH++YE EFG VKGHFGPINAL INPNGLSYASGAEDG
Sbjct:  231 LKTYQTDRPVNDAVISPTKDHILLGGGQEAMSVTTTAGKVGKFETRFFHLVYEEEFGIVKGHFGPINALDINPNGLSYASGAEDG 315
[Close]
BLAST of mRNA_S-firma_M_contig8935.19838.1 vs. uniprot
Match: A0A7R9ZSR1_9STRA (Eukaryotic translation initiation factor 3 subunit I n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZSR1_9STRA)

HSP 1 Score: 147 bits (371), Expect = 1.810e-41
Identity = 67/85 (78.82%), Postives = 77/85 (90.59%), Query Frame = 1 
Query:    7 LKTYKTDRPVNAAVMHPTKEHVILGGGQDAMSVTTTSSSVGKFESRFFHMIYESEFGRVKGHFGPINALAINPNGLSYASGAEDG 261
            LKTYKTDRPVN AV+   K+H++LGGGQ+AMSVTTTS  VGKFE+RFFH++YE EFG VKGHFGPINA+AINPNGL+YASGAEDG
Sbjct:  223 LKTYKTDRPVNDAVISEHKDHILLGGGQEAMSVTTTSGKVGKFETRFFHLVYEEEFGCVKGHFGPINAIAINPNGLNYASGAEDG 307
[Close]
BLAST of mRNA_S-firma_M_contig8935.19838.1 vs. uniprot
Match: A0A7S1DBX8_CYCTE (Eukaryotic translation initiation factor 3 subunit I n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DBX8_CYCTE)

HSP 1 Score: 147 bits (371), Expect = 2.350e-41
Identity = 67/84 (79.76%), Postives = 76/84 (90.48%), Query Frame = 1 
Query:   10 KTYKTDRPVNAAVMHPTKEHVILGGGQDAMSVTTTSSSVGKFESRFFHMIYESEFGRVKGHFGPINALAINPNGLSYASGAEDG 261
            KTYKTDRPVN AV+  TK+H++LGGGQ+AMSVTTTS  VGKFE+RFFH++YE EFG VKGHFGPINALAINPNG S+ASGAEDG
Sbjct:  231 KTYKTDRPVNDAVLSETKDHILLGGGQEAMSVTTTSGKVGKFETRFFHLVYEEEFGTVKGHFGPINALAINPNGRSFASGAEDG 314
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig8935.19838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMX5_9PHAE2.400e-5295.40Eukaryotic translation initiation factor 3 subunit... [more]
A0A835ZF13_9STRA9.880e-4682.76Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2RQ21_9STRA6.200e-4584.71Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2V5S2_9STRA1.240e-4480.23Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2UU51_9STRA2.100e-4478.82Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2I7B8_9STRA2.300e-4378.82Eukaryotic translation initiation factor 3 subunit... [more]
A0A6U3VY90_9STRA1.690e-4281.18Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2NVM0_9STRA1.990e-4280.00Eukaryotic translation initiation factor 3 subunit... [more]
A0A7R9ZSR1_9STRA1.810e-4178.82Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S1DBX8_CYCTE2.350e-4179.76Eukaryotic translation initiation factor 3 subunit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig8935contigS-firma_M_contig8935:3131..3896 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.9
Seed ortholog evalue2.2e-33
Seed eggNOG ortholog115417.EPrPW00000019277
Preferred nameTIF34
KEGG rclassRC00055,RC00523
KEGG koko:K03246,ko:K04567
KEGG ReactionR03658
KEGG Pathwayko00970,ko03013,map00970,map03013
KEGG ModuleM00359,M00360
GOsGO:0000151,GO:0001525,GO:0001568,GO:0001732,GO:0001889,GO:0001944,GO:0002040,GO:0002181,GO:0002183,GO:0002188,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005852,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006950,GO:0006970,GO:0007275,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009628,GO:0009651,GO:0009653,GO:0009987,GO:0010035,GO:0010038,GO:0010467,GO:0010494,GO:0016043,GO:0016282,GO:0019538,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034399,GO:0034622,GO:0034641,GO:0034645,GO:0035239,GO:0035295,GO:0035690,GO:0035770,GO:0036464,GO:0042221,GO:0042493,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043614,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0048513,GO:0048514,GO:0048646,GO:0048731,GO:0048732,GO:0048856,GO:0050896,GO:0051716,GO:0061008,GO:0065003,GO:0070013,GO:0070887,GO:0070993,GO:0071214,GO:0071470,GO:0071540,GO:0071541,GO:0071704,GO:0071826,GO:0071840,GO:0072358,GO:0072359,GO:0080008,GO:0097159,GO:0104004,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990234,GO:1990904
EggNOG free text desc.Eukaryotic translation initiation factor 3 subunit
EggNOG OGs1MCCR@121069,KOG0643@1,KOG0643@2759
EC6.1.1.6
COG Functional cat.JT
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03012,ko03016
Hectar predicted targeting categoryother localisation
Exons2
Model size264
Cds size264
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828714.184813-CDS-S-firma_M_contig8935:3130..33311622828714.184813-CDS-S-firma_M_contig8935:3130..3331Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig8935 3131..3331 -
1697105117.9202902-CDS-S-firma_M_contig8935:3130..33311697105117.9202902-CDS-S-firma_M_contig8935:3130..3331Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig8935 3131..3331 -
1622828714.1977932-CDS-S-firma_M_contig8935:3833..38961622828714.1977932-CDS-S-firma_M_contig8935:3833..3896Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig8935 3834..3896 -
1697105117.9337378-CDS-S-firma_M_contig8935:3833..38961697105117.9337378-CDS-S-firma_M_contig8935:3833..3896Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig8935 3834..3896 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig8935.19838.1prot_S-firma_M_contig8935.19838.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig8935 3131..3896 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig8935.19838.1

>prot_S-firma_M_contig8935.19838.1 ID=prot_S-firma_M_contig8935.19838.1|Name=mRNA_S-firma_M_contig8935.19838.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=88bp
QVLKTYKTDRPVNAAVMHPTKEHVILGGGQDAMSVTTTSSSVGKFESRFF
HMIYESEFGRVKGHFGPINALAINPNGLSYASGAEDG*
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mRNA from alignment at S-firma_M_contig8935:3131..3896-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig8935.19838.1 ID=mRNA_S-firma_M_contig8935.19838.1|Name=mRNA_S-firma_M_contig8935.19838.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=766bp|location=Sequence derived from alignment at S-firma_M_contig8935:3131..3896- (Sphaerotrichia firma Sfir_13m male)
CAGGTGCTGAAGACGTACAAGACTGACCGACCGGTTAACGCCGCTGTCAT
GCACCCGACCAAGGTGAGGCGTATTCCCAGCCGCAACAACCGCTGGGTTC
CCACCGACCTAAGAAGATGAATGCGGTTTGATTTCCGCGCGATGTTCTGT
AGAGCATGCCAACGCGCGCCATCCACGCCAAGAGAGCAGGACGCCACAGA
TTTTTTGTTTTTCTTGGAGTCGCCAGTGTGTCCGTGCTGAGGTAACCCGG
CACCGCAACGCCTGCCCCTGCGCTCCTGAATACCGCAAAGAAAACTCCTG
TAGACCCACTGTATGTAATAGCACTCCCCCACCGGCCACGGCTTCGAGTG
GTTTCGTGCTGGTTCGACAGAAGTTAACAAATCCACGCAAGGTTAGATGG
TGAAAGTCTCTCGTAGTGTTGGTATTTTTGTATTTTTCTACTTGGTCGGA
CCCATGCTGCATCACAGCATGGACCGTTTTGAGCCCGCGGAGCTGCGTCT
CTTAGTGCGGGGAGATTCACTCCGTCTTTGGTTTATTGTATTTGTTTCAA
AACTAACAATCACAGGAGCACGTTATCCTTGGCGGAGGGCAGGACGCCAT
GTCCGTGACCACCACTTCCTCCAGCGTCGGGAAGTTCGAGTCCCGGTTCT
TCCACATGATCTACGAGTCAGAGTTCGGTAGGGTAAAGGGCCACTTCGGC
CCCATCAACGCGCTCGCGATCAACCCCAACGGCCTGAGCTACGCGTCGGG
CGCAGAGGACGGGTGA
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Coding sequence (CDS) from alignment at S-firma_M_contig8935:3131..3896-

>mRNA_S-firma_M_contig8935.19838.1 ID=mRNA_S-firma_M_contig8935.19838.1|Name=mRNA_S-firma_M_contig8935.19838.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=528bp|location=Sequence derived from alignment at S-firma_M_contig8935:3131..3896- (Sphaerotrichia firma Sfir_13m male)
CAGGTGCTGAAGACGTACAAGACTGACCGACCGGTTAACGCCGCTGTCAT
GCACCCGACCAAGCAGGTGCTGAAGACGTACAAGACTGACCGACCGGTTA
ACGCCGCTGTCATGCACCCGACCAAGGAGCACGTTATCCTTGGCGGAGGG
CAGGACGCCATGTCCGTGACCACCACTTCCTCCAGCGTCGGGAAGTTCGA
GTCCCGGTTCTTCCACATGATCTACGAGTCAGAGTTCGGTAGGGTAAAGG
GCCACTTCGGCCCCATCAACGCGCTCGCGATCAACCCCAACGGCCTGAGC
TACGCGTCGGGCGCAGAGGACGGGTGAGAGCACGTTATCCTTGGCGGAGG
GCAGGACGCCATGTCCGTGACCACCACTTCCTCCAGCGTCGGGAAGTTCG
AGTCCCGGTTCTTCCACATGATCTACGAGTCAGAGTTCGGTAGGGTAAAG
GGCCACTTCGGCCCCATCAACGCGCTCGCGATCAACCCCAACGGCCTGAG
CTACGCGTCGGGCGCAGAGGACGGGTGA
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