mRNA_S-firma_M_contig8919.19815.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig8919.19815.1
Unique NamemRNA_S-firma_M_contig8919.19815.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig8919.19815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig8919contigS-firma_M_contig8919:1207..1835 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size629
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig8919.19815.1prot_S-firma_M_contig8919.19815.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig8919 1424..1765 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828711.931107-UTR-S-firma_M_contig8919:1206..14231622828711.931107-UTR-S-firma_M_contig8919:1206..1423Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig8919 1207..1423 +
1697105116.618718-UTR-S-firma_M_contig8919:1206..14231697105116.618718-UTR-S-firma_M_contig8919:1206..1423Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig8919 1207..1423 +
1622828711.9711745-UTR-S-firma_M_contig8919:1765..18351622828711.9711745-UTR-S-firma_M_contig8919:1765..1835Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig8919 1766..1835 +
1697105116.6378996-UTR-S-firma_M_contig8919:1765..18351697105116.6378996-UTR-S-firma_M_contig8919:1765..1835Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig8919 1766..1835 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828711.950145-CDS-S-firma_M_contig8919:1423..17651622828711.950145-CDS-S-firma_M_contig8919:1423..1765Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig8919 1424..1765 +
1697105116.628378-CDS-S-firma_M_contig8919:1423..17651697105116.628378-CDS-S-firma_M_contig8919:1423..1765Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig8919 1424..1765 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig8919.19815.1

>prot_S-firma_M_contig8919.19815.1 ID=prot_S-firma_M_contig8919.19815.1|Name=mRNA_S-firma_M_contig8919.19815.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=114bp
MGVLCFTSRLGSGPRGCAAPIPPLFLRGRLPSTPARGPPTAVERTVTDIV
KQHQPPVCRWSNGWFTLICGLVDDVRLRQVNGSAPLTGVDGGRPLKNRTG
IGAAQAALFSFSA*
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mRNA from alignment at S-firma_M_contig8919:1207..1835+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig8919.19815.1 ID=mRNA_S-firma_M_contig8919.19815.1|Name=mRNA_S-firma_M_contig8919.19815.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=629bp|location=Sequence derived from alignment at S-firma_M_contig8919:1207..1835+ (Sphaerotrichia firma Sfir_13m male)
GGAAAGGAAAGGCAACTCCGAGCCGTCTCTCTTCTCGTCTTCGATTTGAT
TCTGTGTCTGCATGTTGCTCTTTTAGAGAGGTGCCAACCAACCTACGCAC
GTTTCGGGATTGGGTGTCGTGTTGTTTATTTTGGTGGCGGTTTTCTGGTA
AATCTAGTATGACGAATTGTGATGACAGAGGTCGTGGAATGGTTCTGGTG
CGTGATGGCCGGTGGCGATGGGTGTGTTGTGTTTCACCTCACGACTCGGG
TCGGGTCCGCGGGGGTGTGCGGCGCCAATTCCCCCTCTATTTTTAAGGGG
GCGACTACCATCAACGCCTGCCAGGGGCCCGCCCACTGCTGTTGAACGGA
CGGTGACCGACATCGTCAAACAACACCAGCCACCCGTTTGTCGATGGTCA
AACGGCTGGTTCACGTTGATCTGTGGGCTGGTTGACGATGTCCGCCTCCG
CCAGGTCAACGGTAGTGCGCCCCTGACAGGCGTTGATGGTGGTCGCCCCC
TTAAAAATAGAACGGGAATTGGCGCTGCACAAGCCGCCTTGTTTAGTTTT
TCAGCCTGACTCGCCCCACCACCCCACCTCTAAACAGCCTGTCTCCGTCG
CAAGTTCGTCCTTGAGAACGTACGTGCTC
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Coding sequence (CDS) from alignment at S-firma_M_contig8919:1207..1835+

>mRNA_S-firma_M_contig8919.19815.1 ID=mRNA_S-firma_M_contig8919.19815.1|Name=mRNA_S-firma_M_contig8919.19815.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=684bp|location=Sequence derived from alignment at S-firma_M_contig8919:1207..1835+ (Sphaerotrichia firma Sfir_13m male)
ATGGGTGTGTTGTGTTTCACCTCACGACTCGGGTCGGGTCCGCGGGGGTG
TGCGGCGCCAATTCCCCCTCTATTTTTAAGGGGGCGACTACCATCAACGC
CTGCCAGGGGCCCGCCCACTGCTGTTGAACGGACGGTGACCGACATCGTC
AAACAACACCAGCCACCCGTTTGTCGATGGTCAAACGGCTGGTTCACGTT
GATCTGTGGGCTGGTTGACGATGTCCGCCTCCGCCAGGTCAACGGTAGTG
CGCCCCTGACAGGCGTTGATGGTGGTCGCCCCCTTAAAAATAGAACGGGA
ATTGGCGCTGCACAAGCCGCCTTGTTTAGTTTTTCAGCCTGAATGGGTGT
GTTGTGTTTCACCTCACGACTCGGGTCGGGTCCGCGGGGGTGTGCGGCGC
CAATTCCCCCTCTATTTTTAAGGGGGCGACTACCATCAACGCCTGCCAGG
GGCCCGCCCACTGCTGTTGAACGGACGGTGACCGACATCGTCAAACAACA
CCAGCCACCCGTTTGTCGATGGTCAAACGGCTGGTTCACGTTGATCTGTG
GGCTGGTTGACGATGTCCGCCTCCGCCAGGTCAACGGTAGTGCGCCCCTG
ACAGGCGTTGATGGTGGTCGCCCCCTTAAAAATAGAACGGGAATTGGCGC
TGCACAAGCCGCCTTGTTTAGTTTTTCAGCCTGA
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