mRNA_S-firma_M_contig8915.19812.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig8915.19812.1
Unique NamemRNA_S-firma_M_contig8915.19812.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
BLAST of mRNA_S-firma_M_contig8915.19812.1 vs. uniprot
Match: A0A836CMV9_9STRA (ATP-NAD kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMV9_9STRA)

HSP 1 Score: 159 bits (401), Expect = 6.070e-47
Identity = 72/100 (72.00%), Postives = 86/100 (86.00%), Query Frame = 1
Query:    1 QVHPCVPAILFTPICPHSLSFRPIVFPDTVMLRLCMPQEARAEARVSFDGKLSQPLRRGDTLVIKTSNFPVPTICKDDSTADWFASLDQALGFNTRMKQR 300
             VHP VPAILFTPICPHSLSFRP++FPD+V+ R  +P++ RAE  VSFDGK SQPL+ GD LVIK S++PVPTICKDDSTADWF+SLD ALGFN R++Q+
Sbjct:  102 MVHPSVPAILFTPICPHSLSFRPLIFPDSVVFRCDIPEDGRAEGVVSFDGKNSQPLKHGDALVIKMSSYPVPTICKDDSTADWFSSLDSALGFNVRVRQK 201          
BLAST of mRNA_S-firma_M_contig8915.19812.1 vs. uniprot
Match: A0A1X6P8S9_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P8S9_PORUM)

HSP 1 Score: 134 bits (338), Expect = 4.480e-35
Identity = 63/100 (63.00%), Postives = 77/100 (77.00%), Query Frame = 1
Query:    1 QVHPCVPAILFTPICPHSLSFRPIVFPDTVMLRLCMPQEARAEARVSFDGKLSQPLRRGDTLVIKTSNFPVPTICKDDSTADWFASLDQALGFNTRMKQR 300
             VHP VPAILFTPICPHSLSFRPIVFPD   LR+ +  ++R+ A  SFDGK  Q LRRGD L+++ S FPVPT+  +D T+DWFASLD+A  FN+R KQ+
Sbjct:  438 MVHPSVPAILFTPICPHSLSFRPIVFPDAARLRIDVAADSRSTAWASFDGKYRQQLRRGDGLMVQMSMFPVPTVNAEDDTSDWFASLDRAFNFNSRAKQK 537          
BLAST of mRNA_S-firma_M_contig8915.19812.1 vs. uniprot
Match: A0A7S0BNN1_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BNN1_9RHOD)

HSP 1 Score: 129 bits (323), Expect = 1.710e-34
Identity = 62/100 (62.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query:    1 QVHPCVPAILFTPICPHSLSFRPIVFPDTVMLRLCMPQEARAEARVSFDGKLSQPLRRGDTLVIKTSNFPVPTICKDDSTADWFASLDQALGFNTRMKQR 300
             VHP VPAILFTPICPHSLSFRPIVFPD   LR+ +  E+R+ A  SFDGK  Q L+RGD LV++ S +P+PTI K D T DWF SLD+A  FN R +Q+
Sbjct:  178 MVHPSVPAILFTPICPHSLSFRPIVFPDAATLRVDVNVESRSHAWASFDGKFRQLLKRGDGLVVQMSLYPIPTINKTDHTGDWFGSLDRAFHFNNRPEQK 277          
BLAST of mRNA_S-firma_M_contig8915.19812.1 vs. uniprot
Match: A0A2V3J0X2_9FLOR (NAD kinase 2, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0X2_9FLOR)

HSP 1 Score: 132 bits (332), Expect = 8.090e-34
Identity = 63/100 (63.00%), Postives = 76/100 (76.00%), Query Frame = 1
Query:    1 QVHPCVPAILFTPICPHSLSFRPIVFPDTVMLRLCMPQEARAEARVSFDGKLSQPLRRGDTLVIKTSNFPVPTICKDDSTADWFASLDQALGFNTRMKQR 300
             VHP VPAILFTPICPHSLSFRPIVFPD+  LR+ + ++AR+ A  SFDGK  Q LRRGD L+++ + FPVPTI K D T DWF SLD+A  FN+R  Q+
Sbjct:  577 MVHPSVPAILFTPICPHSLSFRPIVFPDSAQLRIEISEDARSHAWASFDGKSRQQLRRGDGLLVEMNLFPVPTINKTDHTGDWFQSLDRAFNFNSRAMQK 676          
BLAST of mRNA_S-firma_M_contig8915.19812.1 vs. uniprot
Match: A0A5J4YX33_PORPP (NAD kinase 2, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YX33_PORPP)

HSP 1 Score: 132 bits (331), Expect = 1.180e-33
Identity = 60/100 (60.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query:    1 QVHPCVPAILFTPICPHSLSFRPIVFPDTVMLRLCMPQEARAEARVSFDGKLSQPLRRGDTLVIKTSNFPVPTICKDDSTADWFASLDQALGFNTRMKQR 300
             VHP VPAILFTP+CPHSLSFRPIVFPD+  LR+C+ Q++RA +  SFDGK  Q LRRGD ++++ S +PVPTI K D T DWF  L +A  FN R +Q+
Sbjct:  681 MVHPSVPAILFTPVCPHSLSFRPIVFPDSARLRICVSQDSRAVSWASFDGKFRQQLRRGDGVLVQMSLYPVPTINKTDHTGDWFGGLSRAFNFNMRAQQK 780          
BLAST of mRNA_S-firma_M_contig8915.19812.1 vs. uniprot
Match: V7CW08_PHAVU (Uncharacterized protein n=4 Tax=Pentapetalae TaxID=1437201 RepID=V7CW08_PHAVU)

HSP 1 Score: 120 bits (300), Expect = 3.820e-33
Identity = 56/100 (56.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query:    1 QVHPCVPAILFTPICPHSLSFRPIVFPDTVMLRLCMPQEARAEARVSFDGKLSQPLRRGDTLVIKTSNFPVPTICKDDSTADWFASLDQALGFNTRMKQR 300
            +VHP VP ILFTPICPHSLSFRP++ PD+  L L +P++AR+ A VSFDGK  Q L RGD++ I  S  P+PT+ K D T DWF SL + L +N R+ Q+
Sbjct:   14 EVHPNVPCILFTPICPHSLSFRPVILPDSAQLELKIPEDARSNAWVSFDGKRRQQLSRGDSVRISMSQHPLPTVNKFDQTGDWFHSLIRCLNWNERLDQK 113          
BLAST of mRNA_S-firma_M_contig8915.19812.1 vs. uniprot
Match: R7QCX7_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCX7_CHOCR)

HSP 1 Score: 130 bits (327), Expect = 3.910e-33
Identity = 60/100 (60.00%), Postives = 77/100 (77.00%), Query Frame = 1
Query:    1 QVHPCVPAILFTPICPHSLSFRPIVFPDTVMLRLCMPQEARAEARVSFDGKLSQPLRRGDTLVIKTSNFPVPTICKDDSTADWFASLDQALGFNTRMKQR 300
             VHP VPAILFTPICPHSLSFRPIVFPD+  +R+ + +EAR+ A  SFDGK  Q L+RGD+++I+ + +PVPT+ K D T DWF SLD+A  FN+R  Q+
Sbjct:  599 MVHPSVPAILFTPICPHSLSFRPIVFPDSAKIRIQISEEARSHAWASFDGKSRQQLQRGDSMIIEMNLYPVPTVNKTDHTGDWFQSLDRAFNFNSRAIQK 698          
BLAST of mRNA_S-firma_M_contig8915.19812.1 vs. uniprot
Match: A0A7S2EIP1_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EIP1_TRICV)

HSP 1 Score: 119 bits (298), Expect = 5.400e-33
Identity = 56/98 (57.14%), Postives = 73/98 (74.49%), Query Frame = 1
Query:    4 VHPCVPAILFTPICPHSLSFRPIVFPDTVMLRLCMPQEARAEARVSFDGKLSQPLRRGDTLVIKTSNFPVPTICKDDSTADWFASLDQALGFNTRMKQ 297
            VHP VPAIL TPICPH LSFRP+V PD V+LR  +P +AR++A V+FDGK  + LRRGD++ I  S +PVPTI + D ++DW  SL +   FNTR++Q
Sbjct:    3 VHPAVPAILVTPICPHVLSFRPMVLPDHVVLRCYVPDDARSDACVAFDGKYRRELRRGDSVAISMSTYPVPTINRMDHSSDWLNSLKRNFNFNTRVRQ 100          
BLAST of mRNA_S-firma_M_contig8915.19812.1 vs. uniprot
Match: A0A059BYB8_EUCGR (Uncharacterized protein (Fragment) n=4 Tax=Myrtoideae TaxID=1699513 RepID=A0A059BYB8_EUCGR)

HSP 1 Score: 118 bits (296), Expect = 1.030e-32
Identity = 55/99 (55.56%), Postives = 71/99 (71.72%), Query Frame = 1
Query:    4 VHPCVPAILFTPICPHSLSFRPIVFPDTVMLRLCMPQEARAEARVSFDGKLSQPLRRGDTLVIKTSNFPVPTICKDDSTADWFASLDQALGFNTRMKQR 300
            VHP VP +LFTPICPHSLSFRP++ PD+  L L +P++AR+ A VSFDGK  Q L RGD++ I  S  P+PT+ K D T DWF SL + L +N R+ Q+
Sbjct:    1 VHPSVPCMLFTPICPHSLSFRPVILPDSARLELKIPEDARSNAWVSFDGKRRQQLSRGDSVRISMSQHPLPTVNKCDQTGDWFRSLIRCLNWNERLDQK 99          
BLAST of mRNA_S-firma_M_contig8915.19812.1 vs. uniprot
Match: A0A7C9ACS0_OPUST (NAD(+) kinase n=2 Tax=Pentapetalae TaxID=1437201 RepID=A0A7C9ACS0_OPUST)

HSP 1 Score: 119 bits (298), Expect = 1.160e-32
Identity = 55/100 (55.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query:    1 QVHPCVPAILFTPICPHSLSFRPIVFPDTVMLRLCMPQEARAEARVSFDGKLSQPLRRGDTLVIKTSNFPVPTICKDDSTADWFASLDQALGFNTRMKQR 300
             VHP VP +LFTPICPHSLSFRP++ PD+  L L +P++AR+ A VSFDGK  Q L RGD++ I  S  P+PT+ K D T DWF SL + L +N R+ Q+
Sbjct:   28 MVHPNVPCMLFTPICPHSLSFRPVILPDSARLELKIPEDARSNAWVSFDGKRRQQLSRGDSVRISMSQHPLPTVNKSDQTGDWFRSLIRCLNWNERLDQK 127          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig8915.19812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CMV9_9STRA6.070e-4772.00ATP-NAD kinase-like domain-containing protein n=1 ... [more]
A0A1X6P8S9_PORUM4.480e-3563.00Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S0BNN1_9RHOD1.710e-3462.00Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A2V3J0X2_9FLOR8.090e-3463.00NAD kinase 2, chloroplastic n=1 Tax=Gracilariopsis... [more]
A0A5J4YX33_PORPP1.180e-3360.00NAD kinase 2, chloroplastic n=1 Tax=Porphyridium p... [more]
V7CW08_PHAVU3.820e-3356.00Uncharacterized protein n=4 Tax=Pentapetalae TaxID... [more]
R7QCX7_CHOCR3.910e-3360.00Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S2EIP1_TRICV5.400e-3357.14Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A059BYB8_EUCGR1.030e-3255.56Uncharacterized protein (Fragment) n=4 Tax=Myrtoid... [more]
A0A7C9ACS0_OPUST1.160e-3255.00NAD(+) kinase n=2 Tax=Pentapetalae TaxID=1437201 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig8915contigS-firma_M_contig8915:117..772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.1
Seed ortholog evalue4.6e-27
Seed eggNOG ortholog130081.XP_005708614.1
KEGG rclassRC00002,RC00078
KEGG koko:K00858,ko:K00939
KEGG ReactionR00104,R00127,R01547,R11319
KEGG Pathwayko00230,ko00730,ko00760,ko01100,ko01110,ko01130,map00230,map00730,map00760,map01100,map01110,map01130
KEGG ModuleM00049
EggNOG free text desc.NADP biosynthetic process
EggNOG OGsCOG0061@1,COG0563@1,KOG2178@2759,KOG3078@2759
EC2.7.1.23,2.7.4.3
COG Functional cat.G
BiGG ReactioniRC1080.CRv4_Au5_s7_g13893_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828711.760811-CDS-S-firma_M_contig8915:116..2381622828711.760811-CDS-S-firma_M_contig8915:116..238Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig8915 117..238 +
1697105116.5298438-CDS-S-firma_M_contig8915:116..2381697105116.5298438-CDS-S-firma_M_contig8915:116..238Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig8915 117..238 +
1622828711.7759209-CDS-S-firma_M_contig8915:594..7721622828711.7759209-CDS-S-firma_M_contig8915:594..772Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig8915 595..772 +
1697105116.5464597-CDS-S-firma_M_contig8915:594..7721697105116.5464597-CDS-S-firma_M_contig8915:594..772Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig8915 595..772 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig8915.19812.1prot_S-firma_M_contig8915.19812.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig8915 117..772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig8915.19812.1

>prot_S-firma_M_contig8915.19812.1 ID=prot_S-firma_M_contig8915.19812.1|Name=mRNA_S-firma_M_contig8915.19812.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=100bp
QVHPCVPAILFTPICPHSLSFRPIVFPDTVMLRLCMPQEARAEARVSFDG
KLSQPLRRGDTLVIKTSNFPVPTICKDDSTADWFASLDQALGFNTRMKQR
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mRNA from alignment at S-firma_M_contig8915:117..772+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig8915.19812.1 ID=mRNA_S-firma_M_contig8915.19812.1|Name=mRNA_S-firma_M_contig8915.19812.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=656bp|location=Sequence derived from alignment at S-firma_M_contig8915:117..772+ (Sphaerotrichia firma Sfir_13m male)
CAGGTGCACCCGTGTGTTCCTGCGATCCTCTTCACGCCGATCTGCCCTCA CAGCCTTTCCTTCCGGCCCATCGTCTTCCCCGACACCGTCATGCTTAGGT TGTGCATGCCCCAGGAGGCCAGGTAAAATTATCAAGCCCCGTTGTGTATT GTTGTTGTTGTTGCGTGTCTTGTGGAGTGCTGTTGAGTGATTTTGGTGGT GCTGTTGTGGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGC TGCTGCTGCGGTGTGCGGTTGCTGTGGTTGTCGAGTGTTCCCCGATTGAA TCAACCGTCCCATGTTCACCCCGCAAACCATTGGTAGTTAACGCCCCCCC CCCTCCCCCCCCTACACCCGCCGACCCCCCACCTGTTGAGAGCTCGTCTA CCTACCGCTTTTTCTCACCGCCTTTTTCTTGCTCACATCGCCGGGCACGA AACGAACGACCAAACCGTTTTATTTTAGGGCGGAGGCGAGGGTGAGCTTC GACGGCAAGCTGAGCCAGCCGCTGCGCCGAGGCGACACGTTGGTCATTAA GACGTCCAACTTCCCCGTGCCGACCATCTGCAAGGACGACAGCACCGCGG ACTGGTTCGCGAGCCTCGACCAGGCGTTAGGGTTCAACACGCGGATGAAG CAACGG
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Coding sequence (CDS) from alignment at S-firma_M_contig8915:117..772+

>mRNA_S-firma_M_contig8915.19812.1 ID=mRNA_S-firma_M_contig8915.19812.1|Name=mRNA_S-firma_M_contig8915.19812.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=600bp|location=Sequence derived from alignment at S-firma_M_contig8915:117..772+ (Sphaerotrichia firma Sfir_13m male)
CAGGTGCACCCGTGTGTTCCTGCGATCCTCTTCACGCCGATCTGCCCTCA
CAGCCTTTCCTTCCGGCCCATCGTCTTCCCCGACACCGTCATGCTTAGGT
TGTGCATGCCCCAGGAGGCCAGCAGGTGCACCCGTGTGTTCCTGCGATCC
TCTTCACGCCGATCTGCCCTCACAGCCTTTCCTTCCGGCCCATCGTCTTC
CCCGACACCGTCATGCTTAGGTTGTGCATGCCCCAGGAGGCCAGGGCGGA
GGCGAGGGTGAGCTTCGACGGCAAGCTGAGCCAGCCGCTGCGCCGAGGCG
ACACGTTGGTCATTAAGACGTCCAACTTCCCCGTGCCGACCATCTGCAAG
GACGACAGCACCGCGGACTGGTTCGCGAGCCTCGACCAGGCGTTAGGGTT
CAACACGCGGATGAAGCAACGGGGCGGAGGCGAGGGTGAGCTTCGACGGC
AAGCTGAGCCAGCCGCTGCGCCGAGGCGACACGTTGGTCATTAAGACGTC
CAACTTCCCCGTGCCGACCATCTGCAAGGACGACAGCACCGCGGACTGGT
TCGCGAGCCTCGACCAGGCGTTAGGGTTCAACACGCGGATGAAGCAACGG
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