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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 671 |
| Cds size | 450 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622828711.6528978-CDS-S-firma_M_contig8914:372..491 | 1622828711.6528978-CDS-S-firma_M_contig8914:372..491 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig8914 373..491 - |
| 1697105116.4901128-CDS-S-firma_M_contig8914:372..491 | 1697105116.4901128-CDS-S-firma_M_contig8914:372..491 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig8914 373..491 - |
| 1622828711.6736295-CDS-S-firma_M_contig8914:1813..2144 | 1622828711.6736295-CDS-S-firma_M_contig8914:1813..2144 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig8914 1814..2144 - |
| 1697105116.4998338-CDS-S-firma_M_contig8914:1813..2144 | 1697105116.4998338-CDS-S-firma_M_contig8914:1813..2144 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig8914 1814..2144 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622828711.6868892-UTR-S-firma_M_contig8914:2144..2363 | 1622828711.6868892-UTR-S-firma_M_contig8914:2144..2363 | Sphaerotrichia firma Sfir_13m male | UTR | S-firma_M_contig8914 2145..2363 - |
| 1697105116.5090878-UTR-S-firma_M_contig8914:2144..2363 | 1697105116.5090878-UTR-S-firma_M_contig8914:2144..2363 | Sphaerotrichia firma Sfir_13m male | UTR | S-firma_M_contig8914 2145..2363 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_M_contig8914.19811.1 >prot_S-firma_M_contig8914.19811.1 ID=prot_S-firma_M_contig8914.19811.1|Name=mRNA_S-firma_M_contig8914.19811.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=150bp
MQRCMQQMQRAPDKANMSEAPQDGKQESGREGDKQEKEKPAPEAPQERQR
DGEKQLGQEKRQQQQQQQQQQHGGTKRIIPTAVKRATRASTGAPIALTAK
GSLYKANKDTGASSEEDDDGGGGDSSHQRRRARPPPAPSSSRGAPGTAAT back to topmRNA from alignment at S-firma_M_contig8914:373..2363- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-firma_M_contig8914.19811.1 ID=mRNA_S-firma_M_contig8914.19811.1|Name=mRNA_S-firma_M_contig8914.19811.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1991bp|location=Sequence derived from alignment at S-firma_M_contig8914:373..2363- (Sphaerotrichia firma Sfir_13m male)
CTTGTAGGAGGCAATAGGAGGCGCACAGGCGCGGAGGAGAGAGGAGCACT
CACAGCCACGCCAACACAAGAGCTGCTCACGACCGGGGCCGAGCTGACCA
GCGCATCCGGCCTGCTCCTCGTGAGAGCCTGCAGCATCTTGCAACGGAGA
GCGCCAACCAGAGGCGGGAATTTTGTTTGAACCCTCTCTCCCTCTCTTCT
CTGTCGAGTCAGGCAGTGCATGCAGCGGTGTATGCAGCAGATGCAGCGGG
CACCAGACAAGGCCAACATGTCCGAGGCTCCGCAGGATGGCAAGCAGGAG
AGTGGGCGAGAGGGCGACAAGCAGGAGAAGGAGAAGCCCGCGCCGGAGGC
TCCACAGGAGCGCCAGCGGGATGGCGAGAAGCAGCTCGGGCAGGAGAAGC
GGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACGGGGGCACCAAGCGC
ATAATTCCAACCGCGGTGAAACGAGCCACCAGGGCTTCCACCGGAGCGCC
GATCGCCCTGACCGCCAAGGGGAGCCTCTACAAGGCCAACAAGGACACCG
GTGAGGCGGGAAGAAGGCGGAGGGAAGGGCGTCGGTGCGCCTGTGAGCGC
GCGTGGAGGGTTTAAAAAATGACGAACGACGGCCGCGTCCCTCATACAAA
ATCGAGCTGCCGCTCATGCATGGCGCGGCTCATGAGCGTAGGAGCCAGAG
AGAGAGAGAGGGAGGGGTAGGAGGGAAGAGGTGGCGGCGGGGCCTAGGAG
GAGAGAGTCTCCCTTCCCGATCCACCGGAGGGTACTACAGCAGTTTCCTG
CGATAGTTTTTGTCTCTCTTCTTCGCCGAAAGGCTGCTGTATGCACATGC
AAATCAAATCCCCTTTCGCTCACGTGTTTTTTTTTTTTTTTGGTTGCGGG
TTCACCCGCTCTGCTCTCTGCTCTCTGCTCCTCCCGCTTGTGTGCCGTGG
GAAACACGCTCCTCTGCTGTGTTCCTACACTTTTTTTGGCGCTCGTTCGC
ATGTTTGGCTAGCTTCGTATGGCCTCGCCACCCATCCCCTCGCATTACTG
CACGAATGTAACCATCAGAAGGAAGAGCTTTTGGTTGCATGGGCAGCGCG
AGCTTTCTCTTGTCCCCGCAAAATCCCAATACATCGGGCCCGACGAGCGA
AAAAACCGTGTGTGTGTGTGTGTTGTTGGCACATGTGAGTTTAGGGCCCG
AAATGTACACAGCCCTTTCCAACCCTATTCTAGCATCGGGCGTGTGAAAA
TCTTTGGAGCGGTGGGAGTGTATATCAGACATGAACTGTAGAAGAGTTGC
TGTGGAGGGTTTGTTTGAATGTGTAAATAGGTAGAGAAACCGTCAGCAAC
AGACTCCATATTCGTCTTAATGTAGTCTCGATCTACTACTGTAGGTTGCC
AGCTGCACTCTGCTCTCTGCTCCTCTTGTCGTTTTTTCAGCAGAACTCAA
ACCCTTCATGCGTGGTAGGCGGCCGTCTTAGAGCGTTCTTTCGCATCATG
CCATGAGACAGACAGAGACTTGCAGCTCTCAAAACACGTTGGGTGGACAC
ACCTCCCAATGCGTGGATCCCTTCCCTCTCTCTGCAAAGAATGTGGGTAT
ACTTCATGTGTCGAGCAGCGGCAAGTGTCCGCGAAATAATACGCCGCCTT
TTCTCTCGATTTTTGCATCTCATCGCGTTCCCGGACCCTTTCGCTTTTCT
CCCGCCCACCACTCACCCCATCCCCGCATCCACCAACCCCCCCCCTCCCT
CCCATGTCAACATGGTTGAAAATCTAGATTACTCTATTTTCTATTTTCTA
ATGCAGACAGGCAGTATTCCAATACATGTTGTGCTCCATCCAATCAACGT
TTTGCCCCTTTTATGTGTCCAGGCGCTTCTTCCGAAGAGGACGACGACGG
TGGCGGCGGCGACTCGTCCCACCAGCGCCGCCGGGCGCGCCCCCCCCCCG
CCCCGTCCTCCTCCCGCGGGGCCCCCGGCACCGCCGCCACC back to topCoding sequence (CDS) from alignment at S-firma_M_contig8914:373..2363- >mRNA_S-firma_M_contig8914.19811.1 ID=mRNA_S-firma_M_contig8914.19811.1|Name=mRNA_S-firma_M_contig8914.19811.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=900bp|location=Sequence derived from alignment at S-firma_M_contig8914:373..2363- (Sphaerotrichia firma Sfir_13m male)
ATGCAGCGGTGTATGCAGCAGATGCAGCGGGCACCAGACAAGGCCAACAT
GTCCGAGGCTCCGCAGGATGGCAAGCAGGAGAGTGGGCGAGAGGGCGACA
AGCAGGAGAAGGAGAAGCCCGCGCCGGAGGCTCCACAGGAGCGCCAGCGG
GATGGCGAGAAGCAGCTCGGGCAGGAGAAGCGGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCACGGGGGCACCAAGCGCATAATTCCAACCGCGGTGA
AACGAGCCACCAGGGCTTCCACCGGAGCGCCGATCGCCCTGACCGCCAAG
GGGAGCCTCTACAAGGCCAACAAGGACACCGATGCAGCGGTGTATGCAGC
AGATGCAGCGGGCACCAGACAAGGCCAACATGTCCGAGGCTCCGCAGGAT
GGCAAGCAGGAGAGTGGGCGAGAGGGCGACAAGCAGGAGAAGGAGAAGCC
CGCGCCGGAGGCTCCACAGGAGCGCCAGCGGGATGGCGAGAAGCAGCTCG
GGCAGGAGAAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACGGG
GGCACCAAGCGCATAATTCCAACCGCGGTGAAACGAGCCACCAGGGCTTC
CACCGGAGCGCCGATCGCCCTGACCGCCAAGGGGAGCCTCTACAAGGCCA
ACAAGGACACCGGCGCTTCTTCCGAAGAGGACGACGACGGTGGCGGCGGC
GACTCGTCCCACCAGCGCCGCCGGGCGCGCCCCCCCCCCGCCCCGTCCTC
CTCCCGCGGGGCCCCCGGCACCGCCGCCACCGCGCTTCTTCCGAAGAGGA
CGACGACGGTGGCGGCGGCGACTCGTCCCACCAGCGCCGCCGGGCGCGCC
CCCCCCCCGCCCCGTCCTCCTCCCGCGGGGCCCCCGGCACCGCCGCCACC back to top
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