mRNA_S-firma_M_contig89.19784.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig89.19784.1
Unique NamemRNA_S-firma_M_contig89.19784.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig89.19784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig89contigS-firma_M_contig89:4607..4923 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size319
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828708.4578366-UTR-S-firma_M_contig89:4606..46111622828708.4578366-UTR-S-firma_M_contig89:4606..4611Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig89 4607..4611 +
1697105114.3134065-UTR-S-firma_M_contig89:4606..46111697105114.3134065-UTR-S-firma_M_contig89:4606..4611Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig89 4607..4611 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828708.4744523-CDS-S-firma_M_contig89:4611..49231622828708.4744523-CDS-S-firma_M_contig89:4611..4923Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig89 4612..4923 +
1697105114.3249412-CDS-S-firma_M_contig89:4611..49231697105114.3249412-CDS-S-firma_M_contig89:4611..4923Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig89 4612..4923 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig89.19784.1prot_S-firma_M_contig89.19784.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig89 4612..4923 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig89.19784.1

>prot_S-firma_M_contig89.19784.1 ID=prot_S-firma_M_contig89.19784.1|Name=mRNA_S-firma_M_contig89.19784.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=104bp
MRLVGWIWRPEEVSDDWSDDCYSLLLLRGGDQKRHISAIRLRLRNGASAR
KQNPRFRKNSATSTTATTTTDNNNEHNNNNHHNSSSRTITPNLLDINVDN
VAQL
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mRNA from alignment at S-firma_M_contig89:4607..4923+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig89.19784.1 ID=mRNA_S-firma_M_contig89.19784.1|Name=mRNA_S-firma_M_contig89.19784.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=317bp|location=Sequence derived from alignment at S-firma_M_contig89:4607..4923+ (Sphaerotrichia firma Sfir_13m male)
AAAAGATGCGACTTGTCGGCTGGATATGGCGTCCTGAAGAAGTCTCTGAT
GATTGGTCGGACGATTGCTACTCGTTGCTGCTACTCCGTGGTGGCGACCA
AAAACGCCACATAAGCGCCATCCGATTGCGCCTCCGAAATGGAGCCAGTG
CCAGGAAACAAAACCCGCGGTTCCGCAAAAATAGCGCAACAAGCACCACC
GCCACCACCACCACAGACAACAACAACGAACACAACAACAACAACCACCA
CAACAGCAGCAGCAGAACTATCACACCAAACCTTTTGGATATCAACGTCG
ACAACGTCGCTCAGCTG
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Coding sequence (CDS) from alignment at S-firma_M_contig89:4607..4923+

>mRNA_S-firma_M_contig89.19784.1 ID=mRNA_S-firma_M_contig89.19784.1|Name=mRNA_S-firma_M_contig89.19784.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=624bp|location=Sequence derived from alignment at S-firma_M_contig89:4607..4923+ (Sphaerotrichia firma Sfir_13m male)
ATGCGACTTGTCGGCTGGATATGGCGTCCTGAAGAAGTCTCTGATGATTG
GTCGGACGATTGCTACTCGTTGCTGCTACTCCGTGGTGGCGACCAAAAAC
GCCACATAAGCGCCATCCGATTGCGCCTCCGAAATGGAGCCAGTGCCAGG
AAACAAAACCCGCGGTTCCGCAAAAATAGCGCAACAAGCACCACCGCCAC
CACCACCACAGACAACAACAACGAACACAACAACAACAACCACCACAACA
GCAGCAGCAGAACTATCACACCAAACCTTTTGGATATCAACGTCGACAAC
GTCGCTCAGCTGATGCGACTTGTCGGCTGGATATGGCGTCCTGAAGAAGT
CTCTGATGATTGGTCGGACGATTGCTACTCGTTGCTGCTACTCCGTGGTG
GCGACCAAAAACGCCACATAAGCGCCATCCGATTGCGCCTCCGAAATGGA
GCCAGTGCCAGGAAACAAAACCCGCGGTTCCGCAAAAATAGCGCAACAAG
CACCACCGCCACCACCACCACAGACAACAACAACGAACACAACAACAACA
ACCACCACAACAGCAGCAGCAGAACTATCACACCAAACCTTTTGGATATC
AACGTCGACAACGTCGCTCAGCTG
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