mRNA_S-firma_M_contig89.19782.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig89.19782.1
Unique NamemRNA_S-firma_M_contig89.19782.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig89.19782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig89contigS-firma_M_contig89:161..926 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size411
Cds size270
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig89.19782.1prot_S-firma_M_contig89.19782.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig89 161..785 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828708.2553701-CDS-S-firma_M_contig89:160..2871622828708.2553701-CDS-S-firma_M_contig89:160..287Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig89 161..287 -
1697105114.240198-CDS-S-firma_M_contig89:160..2871697105114.240198-CDS-S-firma_M_contig89:160..287Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig89 161..287 -
1622828708.2682436-CDS-S-firma_M_contig89:642..7851622828708.2682436-CDS-S-firma_M_contig89:642..785Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig89 643..785 -
1697105114.2502909-CDS-S-firma_M_contig89:642..7851697105114.2502909-CDS-S-firma_M_contig89:642..785Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig89 643..785 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828708.281359-UTR-S-firma_M_contig89:785..9261622828708.281359-UTR-S-firma_M_contig89:785..926Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig89 786..926 -
1697105114.2614093-UTR-S-firma_M_contig89:785..9261697105114.2614093-UTR-S-firma_M_contig89:785..926Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig89 786..926 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig89.19782.1

>prot_S-firma_M_contig89.19782.1 ID=prot_S-firma_M_contig89.19782.1|Name=mRNA_S-firma_M_contig89.19782.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=90bp
MCGEFSREHDRSTSCTQARRSLCAERCREQGGSIDRGRYRGAKEIYRSLH
TPPRRLASLMPRSTCFLRRSTFSASSSSGSSEFGVGDNH*
back to top

mRNA from alignment at S-firma_M_contig89:161..926-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig89.19782.1 ID=mRNA_S-firma_M_contig89.19782.1|Name=mRNA_S-firma_M_contig89.19782.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=766bp|location=Sequence derived from alignment at S-firma_M_contig89:161..926- (Sphaerotrichia firma Sfir_13m male)
TATCCGTGCCCTCCCTCTCCCTATACAAGCGCCCAAGCCGCAGAGGAGAT
CTTAGACAACACTATGACCGCAGCCTTGTGGCAGCAGAGGGCTTGGCAGC
CGCGGGCGGGGCAGGTTGGGCACCGCACAAAGCACAGCTAGATGTGCGGC
GAGTTTTCACGCGAACATGATCGATCAACGTCTTGCACGCAAGCCCGGCG
ATCGCTGTGTGCCGAGAGATGCAGGGAGCAGGGAGGCTCGATCGACAGGG
GTCGATACAGAGGAGCTAAGGAGATATACCGAAGGTGGGCCTGGGAGCTG
ACAGTAGCAGCACGTGGGTGTCAGCACTCGAGCCAGGAAGCGGCATGACT
GTGTGCGCACGTGTGTGTCCATCGTGCAGCAATCGAGGTGTCGCAAAGAG
GGTATCGTTGAAGGTCGAAGAAGGCTCGTTTCCCCGGCAAACGCGCCGTG
TGAGAGGACATCTAGCTGGGGGATAATCAAACATCATCCCCTCGGAAGAA
ACGCCGATGTCTCGTTTCCTCGCGCGGTCGATCTCGACCCCCACACATCA
TTTACCACGCCACCCTCACTTACTTCTACATACACCGCCAACACCGACCT
CCCATCTTCCTATATCCACCACCACTCTACAACATGCAGCTTGCACACAC
CCCCGCGTCGTTTGGCATCACTGATGCCGCGGTCTACCTGTTTCTTGCGG
CGGTCTACCTTCTCTGCCTCGTCTTCGTCCGGATCAAGTGAGTTTGGTGT
GGGGGACAACCATTAG
back to top

Coding sequence (CDS) from alignment at S-firma_M_contig89:161..926-

>mRNA_S-firma_M_contig89.19782.1 ID=mRNA_S-firma_M_contig89.19782.1|Name=mRNA_S-firma_M_contig89.19782.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=540bp|location=Sequence derived from alignment at S-firma_M_contig89:161..926- (Sphaerotrichia firma Sfir_13m male)
ATGTGCGGCGAGTTTTCACGCGAACATGATCGATCAACGTCTTGCACGCA
AGCCCGGCGATCGCTGTGTGCCGAGAGATGCAGGGAGCAGGGAGGCTCGA
TCGACAGGGGTCGATACAGAGGAGCTAAGGAGATATACCGAAGATGTGCG
GCGAGTTTTCACGCGAACATGATCGATCAACGTCTTGCACGCAAGCCCGG
CGATCGCTGTGTGCCGAGAGATGCAGGGAGCAGGGAGGCTCGATCGACAG
GGGTCGATACAGAGGAGCTAAGGAGATATACCGAAGCTTGCACACACCCC
CGCGTCGTTTGGCATCACTGATGCCGCGGTCTACCTGTTTCTTGCGGCGG
TCTACCTTCTCTGCCTCGTCTTCGTCCGGATCAAGTGAGTTTGGTGTGGG
GGACAACCATTAGCTTGCACACACCCCCGCGTCGTTTGGCATCACTGATG
CCGCGGTCTACCTGTTTCTTGCGGCGGTCTACCTTCTCTGCCTCGTCTTC
GTCCGGATCAAGTGAGTTTGGTGTGGGGGACAACCATTAG
back to top