mRNA_S-firma_M_contig885.19730.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig885.19730.1
Unique NamemRNA_S-firma_M_contig885.19730.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig885.19730.1 vs. uniprot
Match: D7FLQ1_ECTSI (REJ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLQ1_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 7.590e-16
Identity = 35/54 (64.81%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    1 GFAELSINVNTAPLGGYVEASPRAGTAAVDSFLLQSLDWTD--DDLPLLYSFAY 156
            GFA++++ +N  P GG+V+ASPRAG AAVD+FLL+SLDWTD  DDLPL++SF+Y
Sbjct:  535 GFADMTLTINAPPTGGHVDASPRAGVAAVDTFLLESLDWTDEVDDLPLMFSFSY 588
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BLAST of mRNA_S-firma_M_contig885.19730.1 vs. uniprot
Match: D7G4X3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4X3_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 4.990e-15
Identity = 34/54 (62.96%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    1 GFAELSINVNTAPLGGYVEASPRAGTAAVDSFLLQSLDWTD--DDLPLLYSFAY 156
            GFA++++ +N  P GG+V ASPRAG AA+D+F+L+SLDWTD  DDLPLL+SF+Y
Sbjct:  827 GFADMTLTINAPPTGGHVVASPRAGVAAIDTFVLESLDWTDEVDDLPLLFSFSY 880
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BLAST of mRNA_S-firma_M_contig885.19730.1 vs. uniprot
Match: D7G398_ECTSI (GPS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G398_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 3.120e-11
Identity = 33/54 (61.11%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    1 GFAELSINVNTAPLGGYVEASPRAGTAAVDSFLLQSLDWTDD--DLPLLYSFAY 156
            GFAE+  +VN  P GGYVEA+PRAG AA+D F L++L W DD  DLPL  SF Y
Sbjct:  823 GFAEIHFDVNAPPSGGYVEATPRAGVAAIDMFSLEALLWEDDIEDLPLKVSFFY 876
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BLAST of mRNA_S-firma_M_contig885.19730.1 vs. uniprot
Match: D7G3A1_ECTSI (GPS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3A1_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 4.250e-11
Identity = 33/54 (61.11%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    1 GFAELSINVNTAPLGGYVEASPRAGTAAVDSFLLQSLDWTDD--DLPLLYSFAY 156
            GFAE+  +VN  P GGYVEA+PRAG AA+D F L++L W DD  DLPL  SF Y
Sbjct:  357 GFAEMYFDVNAPPSGGYVEATPRAGVAAIDMFSLEALLWEDDIGDLPLKVSFFY 410
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BLAST of mRNA_S-firma_M_contig885.19730.1 vs. uniprot
Match: D7G3A0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3A0_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 4.260e-11
Identity = 33/54 (61.11%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    1 GFAELSINVNTAPLGGYVEASPRAGTAAVDSFLLQSLDWTDD--DLPLLYSFAY 156
            GFAE+  +VN  P GGYVEA+PRAG AA+D F L++L W DD  DLPL  SF Y
Sbjct:  416 GFAEIYFDVNAPPSGGYVEATPRAGVAAIDMFSLEALLWEDDLEDLPLKVSFFY 469
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BLAST of mRNA_S-firma_M_contig885.19730.1 vs. uniprot
Match: A0A6H5JM67_9PHAE (GPS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM67_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 7.910e-11
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    1 GFAELSINVNTAPLGGYVEASPRAGTAAVDSFLLQSLDWTDD--DLPLLYSFAY 156
            GFAE+  +VN  P GGYV+A+PRAG AA+D F L++L W DD  DLPL  SF Y
Sbjct:   61 GFAEIHFDVNAPPSGGYVQATPRAGVAAIDMFSLEALLWEDDIEDLPLKVSFFY 114
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BLAST of mRNA_S-firma_M_contig885.19730.1 vs. uniprot
Match: A0A7S1CP03_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CP03_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.420e-7
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    1 GFAELSINVNTAPLGGYVEASPRAGTAAVDSFLLQSLDWTDD--DLPLLYSFA 153
            G+AE+ + VN  P GG+V+ASPRAG AA  +F+L +  WTD   DLPL Y+ A
Sbjct:  331 GYAEVRVEVNRPPTGGFVDASPRAGAAASTAFVLTARRWTDAAADLPLHYAAA 383
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig885.19730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FLQ1_ECTSI7.590e-1664.81REJ domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4X3_ECTSI4.990e-1562.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G398_ECTSI3.120e-1161.11GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G3A1_ECTSI4.250e-1161.11GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G3A0_ECTSI4.260e-1161.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JM67_9PHAE7.910e-1159.26GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S1CP03_9STRA1.420e-752.83Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig885contigS-firma_M_contig885:513..692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue3e-13
Seed eggNOG ortholog2880.D7FLQ1
EggNOG free text desc.detection of mechanical stimulus
EggNOG OGsKOG3599@1,KOG3599@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828703.4122243-CDS-S-firma_M_contig885:512..6921622828703.4122243-CDS-S-firma_M_contig885:512..692Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig885 513..692 +
1697105111.2537615-CDS-S-firma_M_contig885:512..6921697105111.2537615-CDS-S-firma_M_contig885:512..692Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig885 513..692 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig885.19730.1prot_S-firma_M_contig885.19730.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig885 513..692 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig885.19730.1

>prot_S-firma_M_contig885.19730.1 ID=prot_S-firma_M_contig885.19730.1|Name=mRNA_S-firma_M_contig885.19730.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=60bp
GFAELSINVNTAPLGGYVEASPRAGTAAVDSFLLQSLDWTDDDLPLLYSF
AYTKASTAVT
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mRNA from alignment at S-firma_M_contig885:513..692+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig885.19730.1 ID=mRNA_S-firma_M_contig885.19730.1|Name=mRNA_S-firma_M_contig885.19730.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=180bp|location=Sequence derived from alignment at S-firma_M_contig885:513..692+ (Sphaerotrichia firma Sfir_13m male)
GGGTTCGCAGAGCTGTCGATAAACGTCAACACCGCCCCTCTCGGCGGGTA
TGTTGAAGCATCTCCTAGAGCAGGGACTGCTGCAGTCGATAGCTTTTTGC
TGCAATCGCTGGACTGGACCGACGACGATCTTCCTTTGCTCTACTCCTTC
GCGTACACAAAGGCGAGCACGGCAGTGACG
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Coding sequence (CDS) from alignment at S-firma_M_contig885:513..692+

>mRNA_S-firma_M_contig885.19730.1 ID=mRNA_S-firma_M_contig885.19730.1|Name=mRNA_S-firma_M_contig885.19730.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=360bp|location=Sequence derived from alignment at S-firma_M_contig885:513..692+ (Sphaerotrichia firma Sfir_13m male)
GGGTTCGCAGAGCTGTCGATAAACGTCAACACCGCCCCTCTCGGCGGGTA
TGTTGAAGCATCTCCTAGAGCAGGGACTGCTGCAGTCGATAGCTTTTTGC
TGCAATCGCTGGACTGGACCGACGACGATCTTCCTTTGCTCTACTCCTTC
GCGTACACAAAGGCGAGCACGGCAGTGACGGGGTTCGCAGAGCTGTCGAT
AAACGTCAACACCGCCCCTCTCGGCGGGTATGTTGAAGCATCTCCTAGAG
CAGGGACTGCTGCAGTCGATAGCTTTTTGCTGCAATCGCTGGACTGGACC
GACGACGATCTTCCTTTGCTCTACTCCTTCGCGTACACAAAGGCGAGCAC
GGCAGTGACG
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