mRNA_S-firma_M_contig8848.19729.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig8848.19729.1
Unique NamemRNA_S-firma_M_contig8848.19729.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig8848.19729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig8848contigS-firma_M_contig8848:1579..1921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828703.2875412-CDS-S-firma_M_contig8848:1578..18961622828703.2875412-CDS-S-firma_M_contig8848:1578..1896Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig8848 1579..1896 +
1697105111.2215714-CDS-S-firma_M_contig8848:1578..18961697105111.2215714-CDS-S-firma_M_contig8848:1578..1896Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig8848 1579..1896 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828703.302679-UTR-S-firma_M_contig8848:1896..19211622828703.302679-UTR-S-firma_M_contig8848:1896..1921Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig8848 1897..1921 +
1697105111.234005-UTR-S-firma_M_contig8848:1896..19211697105111.234005-UTR-S-firma_M_contig8848:1896..1921Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig8848 1897..1921 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig8848.19729.1prot_S-firma_M_contig8848.19729.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig8848 1579..1896 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig8848.19729.1

>prot_S-firma_M_contig8848.19729.1 ID=prot_S-firma_M_contig8848.19729.1|Name=mRNA_S-firma_M_contig8848.19729.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=106bp
TGRGWWGVVGQHQVEASNSSEGKKRSRYSRDFSSEAGTGYFGGTIDRCGP
RDRARNNSNGNKNNTTYESTAKTDHANGDPSQSPPSHSPSHTCLRSAGTV
GIDDE*
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mRNA from alignment at S-firma_M_contig8848:1579..1921+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig8848.19729.1 ID=mRNA_S-firma_M_contig8848.19729.1|Name=mRNA_S-firma_M_contig8848.19729.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=343bp|location=Sequence derived from alignment at S-firma_M_contig8848:1579..1921+ (Sphaerotrichia firma Sfir_13m male)
ACAGGACGGGGGTGGTGGGGGGTGGTAGGGCAACATCAGGTAGAAGCAAG
CAACAGCAGCGAGGGTAAGAAACGGTCAAGATATTCGCGTGATTTTTCGT
CCGAGGCCGGGACCGGGTACTTTGGGGGTACAATCGATCGTTGTGGTCCA
CGAGACCGCGCTCGAAACAACAGCAACGGCAACAAGAACAACACCACCTA
CGAAAGCACCGCCAAAACCGACCACGCCAACGGAGACCCTTCACAATCTC
CCCCCTCCCACTCCCCCTCACACACCTGCTTGCGCTCCGCGGGCACGGTG
GGCATCGACGATGAATAGTGCTCCACGATCATCCACGCGTTGT
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Coding sequence (CDS) from alignment at S-firma_M_contig8848:1579..1921+

>mRNA_S-firma_M_contig8848.19729.1 ID=mRNA_S-firma_M_contig8848.19729.1|Name=mRNA_S-firma_M_contig8848.19729.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=636bp|location=Sequence derived from alignment at S-firma_M_contig8848:1579..1921+ (Sphaerotrichia firma Sfir_13m male)
ACAGGACGGGGGTGGTGGGGGGTGGTAGGGCAACATCAGGTAGAAGCAAG
CAACAGCAGCGAGGGTAAGAAACGGTCAAGATATTCGCGTGATTTTTCGT
CCGAGGCCGGGACCGGGTACTTTGGGGGTACAATCGATCGTTGTGGTCCA
CGAGACCGCGCTCGAAACAACAGCAACGGCAACAAGAACAACACCACCTA
CGAAAGCACCGCCAAAACCGACCACGCCAACGGAGACCCTTCACAATCTC
CCCCCTCCCACTCCCCCTCACACACCTGCTTGCGCTCCGCGGGCACGGTG
GGCATCGACGATGAATAGACAGGACGGGGGTGGTGGGGGGTGGTAGGGCA
ACATCAGGTAGAAGCAAGCAACAGCAGCGAGGGTAAGAAACGGTCAAGAT
ATTCGCGTGATTTTTCGTCCGAGGCCGGGACCGGGTACTTTGGGGGTACA
ATCGATCGTTGTGGTCCACGAGACCGCGCTCGAAACAACAGCAACGGCAA
CAAGAACAACACCACCTACGAAAGCACCGCCAAAACCGACCACGCCAACG
GAGACCCTTCACAATCTCCCCCCTCCCACTCCCCCTCACACACCTGCTTG
CGCTCCGCGGGCACGGTGGGCATCGACGATGAATAG
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