mRNA_S-firma_M_contig884.19717.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig884.19717.1
Unique NamemRNA_S-firma_M_contig884.19717.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig884.19717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig884contigS-firma_M_contig884:16147..16473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size328
Cds size327
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828702.2846155-CDS-S-firma_M_contig884:16146..164731622828702.2846155-CDS-S-firma_M_contig884:16146..16473Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig884 16147..16473 +
1697105110.5770862-CDS-S-firma_M_contig884:16146..164731697105110.5770862-CDS-S-firma_M_contig884:16146..16473Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig884 16147..16473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig884.19717.1prot_S-firma_M_contig884.19717.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig884 16147..16473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig884.19717.1

>prot_S-firma_M_contig884.19717.1 ID=prot_S-firma_M_contig884.19717.1|Name=mRNA_S-firma_M_contig884.19717.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=109bp
MRPLLPTLLPQKRRGPQELPLSLPDRLAWRKHPEAQPSTLPRPSRSPATQ
QDVRRGSPRSTMMGGLPRPRPLVLLACPRGPLPRGRFSRPYPLLPENALL
RSIRETLRR
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mRNA from alignment at S-firma_M_contig884:16147..16473+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig884.19717.1 ID=mRNA_S-firma_M_contig884.19717.1|Name=mRNA_S-firma_M_contig884.19717.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=327bp|location=Sequence derived from alignment at S-firma_M_contig884:16147..16473+ (Sphaerotrichia firma Sfir_13m male)
ATGCGGCCTCTCCTCCCGACGCTTCTTCCGCAGAAAAGGCGTGGCCCGCA
GGAGCTGCCGCTGAGTCTACCGGATCGTCTGGCGTGGCGAAAACATCCAG
AAGCGCAGCCGAGCACACTCCCTCGGCCCTCGCGCTCCCCGGCGACGCAG
CAGGATGTTCGCCGTGGCTCTCCAAGGTCGACGATGATGGGGGGCCTTCC
ACGCCCGCGTCCACTTGTACTTCTTGCTTGTCCTCGTGGCCCGCTCCCTC
GAGGCCGTTTTTCACGTCCGTATCCACTTCTTCCAGAAAACGCCCTCCTG
AGATCGATCCGGGAAACCCTGCGTCGC
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Coding sequence (CDS) from alignment at S-firma_M_contig884:16147..16473+

>mRNA_S-firma_M_contig884.19717.1 ID=mRNA_S-firma_M_contig884.19717.1|Name=mRNA_S-firma_M_contig884.19717.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=654bp|location=Sequence derived from alignment at S-firma_M_contig884:16147..16473+ (Sphaerotrichia firma Sfir_13m male)
ATGCGGCCTCTCCTCCCGACGCTTCTTCCGCAGAAAAGGCGTGGCCCGCA
GGAGCTGCCGCTGAGTCTACCGGATCGTCTGGCGTGGCGAAAACATCCAG
AAGCGCAGCCGAGCACACTCCCTCGGCCCTCGCGCTCCCCGGCGACGCAG
CAGGATGTTCGCCGTGGCTCTCCAAGGTCGACGATGATGGGGGGCCTTCC
ACGCCCGCGTCCACTTGTACTTCTTGCTTGTCCTCGTGGCCCGCTCCCTC
GAGGCCGTTTTTCACGTCCGTATCCACTTCTTCCAGAAAACGCCCTCCTG
AGATCGATCCGGGAAACCCTGCGTCGCATGCGGCCTCTCCTCCCGACGCT
TCTTCCGCAGAAAAGGCGTGGCCCGCAGGAGCTGCCGCTGAGTCTACCGG
ATCGTCTGGCGTGGCGAAAACATCCAGAAGCGCAGCCGAGCACACTCCCT
CGGCCCTCGCGCTCCCCGGCGACGCAGCAGGATGTTCGCCGTGGCTCTCC
AAGGTCGACGATGATGGGGGGCCTTCCACGCCCGCGTCCACTTGTACTTC
TTGCTTGTCCTCGTGGCCCGCTCCCTCGAGGCCGTTTTTCACGTCCGTAT
CCACTTCTTCCAGAAAACGCCCTCCTGAGATCGATCCGGGAAACCCTGCG
TCGC
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