mRNA_S-firma_M_contig884.19713.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig884.19713.1
Unique NamemRNA_S-firma_M_contig884.19713.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig884.19713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig884contigS-firma_M_contig884:4638..5165 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size497
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig884.19713.1prot_S-firma_M_contig884.19713.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig884 4683..5106 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828702.1320875-UTR-S-firma_M_contig884:4637..46821622828702.1320875-UTR-S-firma_M_contig884:4637..4682Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig884 4638..4682 -
1697105110.5210075-UTR-S-firma_M_contig884:4637..46821697105110.5210075-UTR-S-firma_M_contig884:4637..4682Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig884 4638..4682 -
1622828702.1702774-UTR-S-firma_M_contig884:5106..51651622828702.1702774-UTR-S-firma_M_contig884:5106..5165Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig884 5107..5165 -
1697105110.544908-UTR-S-firma_M_contig884:5106..51651697105110.544908-UTR-S-firma_M_contig884:5106..5165Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig884 5107..5165 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828702.144408-CDS-S-firma_M_contig884:4682..49101622828702.144408-CDS-S-firma_M_contig884:4682..4910Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig884 4683..4910 -
1697105110.5290895-CDS-S-firma_M_contig884:4682..49101697105110.5290895-CDS-S-firma_M_contig884:4682..4910Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig884 4683..4910 -
1622828702.157179-CDS-S-firma_M_contig884:4941..51061622828702.157179-CDS-S-firma_M_contig884:4941..5106Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig884 4942..5106 -
1697105110.5368392-CDS-S-firma_M_contig884:4941..51061697105110.5368392-CDS-S-firma_M_contig884:4941..5106Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig884 4942..5106 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig884.19713.1

>prot_S-firma_M_contig884.19713.1 ID=prot_S-firma_M_contig884.19713.1|Name=mRNA_S-firma_M_contig884.19713.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=131bp
MSLPSVNQTAWSIGELSDTAANDGRGNTMKSNYFFMYHVLHRFLLLCCSG
KNWDDRVCVRRGKESVKDEGGFEGRRRCWLHAPRRCSALHAFLGEYAPSF
YFPVRQKVVVYYALLGGVVEFVRWGEKSAV*
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mRNA from alignment at S-firma_M_contig884:4638..5165-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig884.19713.1 ID=mRNA_S-firma_M_contig884.19713.1|Name=mRNA_S-firma_M_contig884.19713.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=528bp|location=Sequence derived from alignment at S-firma_M_contig884:4638..5165- (Sphaerotrichia firma Sfir_13m male)
GCTTATACGTGAAAGATGTGGCAGAGAAGGGGTGGTGTGCAGGGTGGTTA
TAGGTGTGTATGTCGCTTCCATCCGTAAACCAAACGGCATGGTCAATCGG
CGAGCTGAGCGACACCGCAGCGAACGATGGAAGAGGCAACACTATGAAGT
CGAACTACTTCTTTATGTACCATGTTCTTCACCGCTTCCTCCTCCTGTGT
TGTTCCGGAAAAAATTGGGATGACGTTCTAGAGGGGAGCCAGGGTTTCGA
TCGAGAGAGTGTGTGTGCGGCGGGGAAAGGAGAGCGTGAAGGACGAAGGA
GGTTTTGAAGGACGAAGGAGGTGTTGGTTGCATGCTCCCCGCCGGTGTTC
GGCCCTGCACGCGTTCCTGGGCGAATATGCACCCAGTTTTTATTTTCCGG
TTCGTCAAAAAGTAGTGGTCTATTATGCGTTGTTGGGTGGTGTTGTGGAA
TTCGTGCGTTGGGGGGAAAAAAGTGCAGTGTAAATTAGACTATTCTTACT
AGATGCTGATGCGCCACATATATGTACG
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Coding sequence (CDS) from alignment at S-firma_M_contig884:4638..5165-

>mRNA_S-firma_M_contig884.19713.1 ID=mRNA_S-firma_M_contig884.19713.1|Name=mRNA_S-firma_M_contig884.19713.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=786bp|location=Sequence derived from alignment at S-firma_M_contig884:4638..5165- (Sphaerotrichia firma Sfir_13m male)
ATGTCGCTTCCATCCGTAAACCAAACGGCATGGTCAATCGGCGAGCTGAG
CGACACCGCAGCGAACGATGGAAGAGGCAACACTATGAAGTCGAACTACT
TCTTTATGTACCATGTTCTTCACCGCTTCCTCCTCCTGTGTTGTTCCGGA
AAAAATTGGGATGACATGTCGCTTCCATCCGTAAACCAAACGGCATGGTC
AATCGGCGAGCTGAGCGACACCGCAGCGAACGATGGAAGAGGCAACACTA
TGAAGTCGAACTACTTCTTTATGTACCATGTTCTTCACCGCTTCCTCCTC
CTGTGTTGTTCCGGAAAAAATTGGGATGACAGAGTGTGTGTGCGGCGGGG
AAAGGAGAGCGTGAAGGACGAAGGAGGTTTTGAAGGACGAAGGAGGTGTT
GGTTGCATGCTCCCCGCCGGTGTTCGGCCCTGCACGCGTTCCTGGGCGAA
TATGCACCCAGTTTTTATTTTCCGGTTCGTCAAAAAGTAGTGGTCTATTA
TGCGTTGTTGGGTGGTGTTGTGGAATTCGTGCGTTGGGGGGAAAAAAGTG
CAGTGTAAAGAGTGTGTGTGCGGCGGGGAAAGGAGAGCGTGAAGGACGAA
GGAGGTTTTGAAGGACGAAGGAGGTGTTGGTTGCATGCTCCCCGCCGGTG
TTCGGCCCTGCACGCGTTCCTGGGCGAATATGCACCCAGTTTTTATTTTC
CGGTTCGTCAAAAAGTAGTGGTCTATTATGCGTTGTTGGGTGGTGTTGTG
GAATTCGTGCGTTGGGGGGAAAAAAGTGCAGTGTAA
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