mRNA_S-firma_M_contig879.19655.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig879.19655.1
Unique NamemRNA_S-firma_M_contig879.19655.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
[Close]
BLAST of mRNA_S-firma_M_contig879.19655.1 vs. uniprot
Match: D7FJT2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJT2_ECTSI)

HSP 1 Score: 214 bits (546), Expect = 7.100e-61
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 3 
Query:   15 MVIKTEVCAFSDTRIYPGHGVRMIRRDGQPITLFSAKCKSLLKQRKKPAKLTWTQAWRRLNKKIKVEEVTRRRTRKTTKLNRAIVGASLEEIKKKRSQKPEVRSAQREAAAKEVKA 362
            MVIKTEVCAFSDTRIYPGHGVR IRRDGQPITLFSAKCKSLLKQRKKPAKLTWTQAWRRLNKKIKVEEVTRRRTRKTTKLNRAIVGASLEEIKKKRSQKPEVRSAQREAAAKEVKA
Sbjct:    1 MVIKTEVCAFSDTRIYPGHGVRFIRRDGQPITLFSAKCKSLLKQRKKPAKLTWTQAWRRLNKKIKVEEVTRRRTRKTTKLNRAIVGASLEEIKKKRSQKPEVRSAQREAAAKEVKA 116
[Close]
BLAST of mRNA_S-firma_M_contig879.19655.1 vs. uniprot
Match: A0A024TG11_9STRA (Uncharacterized protein n=8 Tax=Aphanomyces TaxID=100860 RepID=A0A024TG11_9STRA)

HSP 1 Score: 157 bits (397), Expect = 8.670e-41
Identity = 77/115 (66.96%), Postives = 98/115 (85.22%), Query Frame = 3 
Query:   15 MVIKTEVCAFSDTRIYPGHGVRMIRRDGQPITLFSAKCKSLLKQRKKPAKLTWTQAWRRLNKKIKVEEVTRRRTRKTTKLNRAIVGASLEEIKKKRSQKPEVRSAQREAAAKEVK 359
            MVIKTE CAFS++RIYPGHGVR++R+DG   TL ++KCKSL  QRKKPAK+ WT  WRR+NKK++VEE +RRR RKTTK+ RAIVG S++E+KKKR+QKP++R+A R+AA KE K
Sbjct:    1 MVIKTETCAFSESRIYPGHGVRLVRKDGNAYTLLNSKCKSLFLQRKKPAKIHWTLGWRRMNKKLRVEETSRRRARKTTKIQRAIVGVSVDELKKKRNQKPQLRAAARDAALKEAK 115
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BLAST of mRNA_S-firma_M_contig879.19655.1 vs. uniprot
Match: A0A6G0WHE0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHE0_9STRA)

HSP 1 Score: 156 bits (394), Expect = 2.340e-40
Identity = 78/115 (67.83%), Postives = 96/115 (83.48%), Query Frame = 3 
Query:   15 MVIKTEVCAFSDTRIYPGHGVRMIRRDGQPITLFSAKCKSLLKQRKKPAKLTWTQAWRRLNKKIKVEEVTRRRTRKTTKLNRAIVGASLEEIKKKRSQKPEVRSAQREAAAKEVK 359
            MVIKTE CAFS++RIYPGHG R++R+DG    L ++KCKSL  QRKKPAK+ WT  WRR+NKK++VEEV RRR RKTTK+ RAIVG S++E+KKKR+QKP+VR+A REAA KE K
Sbjct:    1 MVIKTETCAFSESRIYPGHGSRLVRKDGNAYMLLNSKCKSLFLQRKKPAKIHWTLGWRRMNKKLRVEEVARRRARKTTKIQRAIVGVSVDELKKKRNQKPQVRAAAREAALKEAK 115
[Close]
BLAST of mRNA_S-firma_M_contig879.19655.1 vs. uniprot
Match: A0A836CJ11_9STRA (Ribosomal protein L24e-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ11_9STRA)

HSP 1 Score: 153 bits (387), Expect = 2.470e-39
Identity = 79/106 (74.53%), Postives = 90/106 (84.91%), Query Frame = 3 
Query:   15 MVIKTEVCAFSDTRIYPGHGVRMIRRDGQPITLFSAKCKSLLKQRKKPAKLTWTQAWRRLNKKIKVEEVTRRRTRKTTKLNRAIVGASLEEIKKKRSQKPEVRSAQ 332
            MVIKT+VCAFS+ RIYPGHG+R IR+DG P+   +AKCKSLL QRKKPAKLTWTQ+WRRLNKKIKVEEVTRRR R+TTK  RAIVGASL+EIK KR+  P+   AQ
Sbjct:    1 MVIKTDVCAFSEFRIYPGHGMRFIRKDGTPVVFINAKCKSLLMQRKKPAKLTWTQSWRRLNKKIKVEEVTRRRNRRTTKFQRAIVGASLDEIKAKRAAVPKKTPAQ 106
[Close]
BLAST of mRNA_S-firma_M_contig879.19655.1 vs. uniprot
Match: T0Q6K9_SAPDV (50S ribosomal protein L24e n=2 Tax=Saprolegnia TaxID=4769 RepID=T0Q6K9_SAPDV)

HSP 1 Score: 152 bits (383), Expect = 6.640e-39
Identity = 75/112 (66.96%), Postives = 94/112 (83.93%), Query Frame = 3 
Query:   15 MVIKTEVCAFSDTRIYPGHGVRMIRRDGQPITLFSAKCKSLLKQRKKPAKLTWTQAWRRLNKKIKVEEVTRRRTRKTTKLNRAIVGASLEEIKKKRSQKPEVRSAQREAAAK 350
            MVIKT+ CAFS++RIYPGHG R+IR+DG    L ++KCKSL  QRKKPAK+ WT  WRR+NKK++VEEV+RRR RKTTK+ RAIVG S+E++KKKR+QKP VR+A R+AA K
Sbjct:    1 MVIKTDTCAFSESRIYPGHGTRLIRKDGNAFMLLNSKCKSLFLQRKKPAKIVWTLGWRRMNKKLRVEEVSRRRARKTTKIQRAIVGVSVEDLKKKRNQKPAVRAAARDAALK 112
[Close]
BLAST of mRNA_S-firma_M_contig879.19655.1 vs. uniprot
Match: W7TW72_9STRA (60s ribosomal protein l24 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TW72_9STRA)

HSP 1 Score: 151 bits (381), Expect = 1.400e-38
Identity = 80/117 (68.38%), Postives = 96/117 (82.05%), Query Frame = 3 
Query:   15 MVIKTEVCAFSDTRIYPGHGVRMIRRDGQPITLFSAKCKSLLKQRKKPAKLTWTQAWRRLNKKIKVEEVTRRRTRKTTKLNRAIVGASLEEIKKKRSQKPEVRSAQREAAAKEVKAR 365
            MVIKT++C+FS+ R+YPGHG+R +RRD   +   +AK K L  QRKK A+L WTQ WRRL+KKIKVEE+ +RRTR+TTK  RAIVGASLEEIKKKR+QKPE R+AQREAA KEVK R
Sbjct:    1 MVIKTDMCSFSEYRVYPGHGIRFVRRDSATLVFSTAKTKGLYNQRKKAARLVWTQGWRRLHKKIKVEEIQKRRTRRTTKFQRAIVGASLEEIKKKRAQKPE-RNAQREAALKEVKER 116
[Close]
BLAST of mRNA_S-firma_M_contig879.19655.1 vs. uniprot
Match: A0A8K1FKL7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FKL7_PYTOL)

HSP 1 Score: 150 bits (380), Expect = 1.740e-38
Identity = 79/117 (67.52%), Postives = 92/117 (78.63%), Query Frame = 3 
Query:   15 MVIKTEVCAFSDTRIYPGHGVRMIRRDGQPITLFSAKCKSLLKQRKKPAKLTWTQAWRRLNKKIKVEEVTRRRTRKTTKLNRAIVGASLEEIKKKRSQKPEVRSAQREAAAKEVKAR 365
            MVIKTE C+FS+ RIYPGHG R IRRDG   T  +AK KSL  QRKKP K+ WT  WRR+NKKIKVEE+ RRRTRKT K+ RAIVG S ++I+KKR+QKP+VR+A REAA KE K R
Sbjct:    1 MVIKTETCSFSEGRIYPGHGSRYIRRDGTVYTFLNAKSKSLFMQRKKPTKIVWTLGWRRMNKKIKVEEIARRRTRKTAKVQRAIVGVSADDIRKKRNQKPQVRAAAREAALKEAKDR 117
[Close]
BLAST of mRNA_S-firma_M_contig879.19655.1 vs. uniprot
Match: A0A6H5L421_9PHAE (Alpha-mannosidase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L421_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 9.240e-38
Identity = 106/195 (54.36%), Postives = 121/195 (62.05%), Query Frame = -2 
Query: 2830 DRAQGCASLADGELELMTHRRILTEDQRGVGEALNETTGGENHYPDWERQGNGLVFRGTHYLVISKKEDGMKAVRSLMDEVRS--NPFLVAFGEEERPGAAGDADEDEARPPVSG--GE-----------------------------------RGSGNALETEEPALPSGGGLAAGGLVKALPANVGLMTLMQL 3297
            DRAQG +SLADGELELM HRR+LT+DQRGVGEALNETTGG  H+PDW+R+G+G VFRGTHYLVISKK DGMKAVRSLMDE R   +PFL AFG+E     AG AD     PP  G  GE                                   R S    +T++ A P GGGL    L +ALPANVGLMTLM++
Sbjct:  996 DRAQGVSSLADGELELMAHRRLLTDDQRGVGEALNETTGGMTHFPDWKREGDGQVFRGTHYLVISKKRDGMKAVRSLMDEARQVFSPFLPAFGDE-----AGRAD-GYPLPPQGGTVGESAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRRSLRETDTKDTARPLGGGL----LRRALPANVGLMTLMRV 1180
[Close]
BLAST of mRNA_S-firma_M_contig879.19655.1 vs. uniprot
Match: A0A2D4BH65_PYTIN (60S ribosomal protein L24, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BH65_PYTIN)

HSP 1 Score: 148 bits (373), Expect = 1.520e-37
Identity = 77/117 (65.81%), Postives = 92/117 (78.63%), Query Frame = 3 
Query:   15 MVIKTEVCAFSDTRIYPGHGVRMIRRDGQPITLFSAKCKSLLKQRKKPAKLTWTQAWRRLNKKIKVEEVTRRRTRKTTKLNRAIVGASLEEIKKKRSQKPEVRSAQREAAAKEVKAR 365
            MVIKTE C+FS+ RIYPGHG R +RRDG   T  ++K KSL  QRKKP K+ WT  WRR+NKKIKVEEV RRRTRKT K+ RAI+G S ++I+KKR+QKP+VR+A REAA KE K R
Sbjct:    1 MVIKTETCSFSEGRIYPGHGSRYVRRDGTVYTFINSKSKSLFLQRKKPTKIVWTLGWRRMNKKIKVEEVARRRTRKTAKVQRAILGVSADDIRKKRNQKPQVRAAAREAALKEAKDR 117
[Close]
BLAST of mRNA_S-firma_M_contig879.19655.1 vs. uniprot
Match: A0A6V1N3D6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1N3D6_HETAK)

HSP 1 Score: 147 bits (370), Expect = 3.980e-37
Identity = 77/106 (72.64%), Postives = 85/106 (80.19%), Query Frame = 3 
Query:   15 MVIKTEVCAFSDTRIYPGHGVRMIRRDGQPITLFSAKCKSLLKQRKKPAKLTWTQAWRRLNKKIKVEEVTRRRTRKTTKLNRAIVGASLEEIKKKRSQKPEVRSAQ 332
            MVIKTE+CAFS+ RIYPGHG + +RRDGQP+ L S+K KSLL QRKKPAKLTWT  WRRLNKKIKVEE  RRRTR+  K  RAIVGASL+EIKKKR  KP    AQ
Sbjct:    1 MVIKTELCAFSEFRIYPGHGQKFVRRDGQPVMLISSKTKSLLLQRKKPAKLTWTVGWRRLNKKIKVEESARRRTRRAAKFQRAIVGASLDEIKKKRQAKPAASKAQ 106
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig879.19655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJT2_ECTSI7.100e-6199.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A024TG11_9STRA8.670e-4166.96Uncharacterized protein n=8 Tax=Aphanomyces TaxID=... [more]
A0A6G0WHE0_9STRA2.340e-4067.83Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A836CJ11_9STRA2.470e-3974.53Ribosomal protein L24e-domain-containing protein n... [more]
T0Q6K9_SAPDV6.640e-3966.9650S ribosomal protein L24e n=2 Tax=Saprolegnia Tax... [more]
W7TW72_9STRA1.400e-3868.3860s ribosomal protein l24 n=2 Tax=Monodopsidaceae ... [more]
A0A8K1FKL7_PYTOL1.740e-3867.52Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6H5L421_9PHAE9.240e-3854.36Alpha-mannosidase n=1 Tax=Ectocarpus sp. CCAP 1310... [more]
A0A2D4BH65_PYTIN1.520e-3765.8160S ribosomal protein L24, putative n=1 Tax=Pythiu... [more]
A0A6V1N3D6_HETAK3.980e-3772.64Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig879contigS-firma_M_contig879:13009..21007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.9
Seed ortholog evalue6.8e-54
Seed eggNOG ortholog2880.D7FJT2
Preferred nameRPL24
KEGG koko:K02896
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0000003,GO:0000027,GO:0000075,GO:0000184,GO:0000278,GO:0000280,GO:0000902,GO:0000904,GO:0000956,GO:0001654,GO:0002181,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005783,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006928,GO:0006935,GO:0006996,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0007399,GO:0007409,GO:0007411,GO:0007423,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009605,GO:0009653,GO:0009719,GO:0009725,GO:0009733,GO:0009734,GO:0009755,GO:0009790,GO:0009791,GO:0009792,GO:0009892,GO:0009908,GO:0009987,GO:0010033,GO:0010458,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0021545,GO:0021554,GO:0021675,GO:0022008,GO:0022402,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0023052,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031290,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032870,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0040011,GO:0042221,GO:0042254,GO:0042255,GO:0042273,GO:0042330,GO:0042788,GO:0042886,GO:0043009,GO:0043010,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0045047,GO:0045184,GO:0045786,GO:0045930,GO:0046483,GO:0046700,GO:0046907,GO:0048285,GO:0048367,GO:0048438,GO:0048467,GO:0048468,GO:0048513,GO:0048519,GO:0048523,GO:0048608,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0060041,GO:0060255,GO:0061458,GO:0061564,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070887,GO:0070925,GO:0070972,GO:0071310,GO:0071365,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090567,GO:0097159,GO:0097485,GO:0120036,GO:0120039,GO:0140014,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902626,GO:1903047,GO:1990904
EggNOG free text desc.assembly of large subunit precursor of preribosome
EggNOG OGsCOG2075@1,KOG1722@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L24e-related
Ec32 orthologEc-06_010260.1
Exons11
Model size3421
Cds size462
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828695.6155233-UTR-S-firma_M_contig879:13008..130221622828695.6155233-UTR-S-firma_M_contig879:13008..13022Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig879 13009..13022 +
1697105106.2958188-UTR-S-firma_M_contig879:13008..130221697105106.2958188-UTR-S-firma_M_contig879:13008..13022Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig879 13009..13022 +
1622828695.7296681-UTR-S-firma_M_contig879:16334..166731622828695.7296681-UTR-S-firma_M_contig879:16334..16673Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig879 16335..16673 +
1697105106.378782-UTR-S-firma_M_contig879:16334..166731697105106.378782-UTR-S-firma_M_contig879:16334..16673Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig879 16335..16673 +
1622828695.7450483-UTR-S-firma_M_contig879:16685..186031622828695.7450483-UTR-S-firma_M_contig879:16685..18603Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig879 16686..18603 +
1697105106.3882847-UTR-S-firma_M_contig879:16685..186031697105106.3882847-UTR-S-firma_M_contig879:16685..18603Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig879 16686..18603 +
1622828695.7596471-UTR-S-firma_M_contig879:18901..192141622828695.7596471-UTR-S-firma_M_contig879:18901..19214Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig879 18902..19214 +
1697105106.3993387-UTR-S-firma_M_contig879:18901..192141697105106.3993387-UTR-S-firma_M_contig879:18901..19214Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig879 18902..19214 +
1622828695.777045-UTR-S-firma_M_contig879:19652..197771622828695.777045-UTR-S-firma_M_contig879:19652..19777Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig879 19653..19777 +
1697105106.413507-UTR-S-firma_M_contig879:19652..197771697105106.413507-UTR-S-firma_M_contig879:19652..19777Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig879 19653..19777 +
1622828695.795275-UTR-S-firma_M_contig879:20462..205891622828695.795275-UTR-S-firma_M_contig879:20462..20589Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig879 20463..20589 +
1697105106.426793-UTR-S-firma_M_contig879:20462..205891697105106.426793-UTR-S-firma_M_contig879:20462..20589Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig879 20463..20589 +
1622828695.8113894-UTR-S-firma_M_contig879:20884..210071622828695.8113894-UTR-S-firma_M_contig879:20884..21007Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig879 20885..21007 +
1697105106.4398382-UTR-S-firma_M_contig879:20884..210071697105106.4398382-UTR-S-firma_M_contig879:20884..21007Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig879 20885..21007 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828695.6329114-CDS-S-firma_M_contig879:13022..131091622828695.6329114-CDS-S-firma_M_contig879:13022..13109Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig879 13023..13109 +
1697105106.3074856-CDS-S-firma_M_contig879:13022..131091697105106.3074856-CDS-S-firma_M_contig879:13022..13109Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig879 13023..13109 +
1622828695.6464658-CDS-S-firma_M_contig879:13562..136401622828695.6464658-CDS-S-firma_M_contig879:13562..13640Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig879 13563..13640 +
1697105106.3212004-CDS-S-firma_M_contig879:13562..136401697105106.3212004-CDS-S-firma_M_contig879:13562..13640Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig879 13563..13640 +
1622828695.6626117-CDS-S-firma_M_contig879:14309..143621622828695.6626117-CDS-S-firma_M_contig879:14309..14362Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig879 14310..14362 +
1697105106.3359637-CDS-S-firma_M_contig879:14309..143621697105106.3359637-CDS-S-firma_M_contig879:14309..14362Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig879 14310..14362 +
1622828695.6778142-CDS-S-firma_M_contig879:14752..148691622828695.6778142-CDS-S-firma_M_contig879:14752..14869Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig879 14753..14869 +
1697105106.34838-CDS-S-firma_M_contig879:14752..148691697105106.34838-CDS-S-firma_M_contig879:14752..14869Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig879 14753..14869 +
1622828695.6983976-CDS-S-firma_M_contig879:15885..159871622828695.6983976-CDS-S-firma_M_contig879:15885..15987Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig879 15886..15987 +
1697105106.3604314-CDS-S-firma_M_contig879:15885..159871697105106.3604314-CDS-S-firma_M_contig879:15885..15987Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig879 15886..15987 +
1622828695.714909-CDS-S-firma_M_contig879:16309..163341622828695.714909-CDS-S-firma_M_contig879:16309..16334Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig879 16310..16334 +
1697105106.3697398-CDS-S-firma_M_contig879:16309..163341697105106.3697398-CDS-S-firma_M_contig879:16309..16334Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig879 16310..16334 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig879.19655.1prot_S-firma_M_contig879.19655.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig879 13023..16334 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig879.19655.1

>prot_S-firma_M_contig879.19655.1 ID=prot_S-firma_M_contig879.19655.1|Name=mRNA_S-firma_M_contig879.19655.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=154bp
MVIKTEVCAFSDTRIYPGHGVRMIRRDGQPITLFSAKCKSLLKQRKKPAK
LTWTQAWRRLNKKIKVEEVTRRRTRKTTKLNRAIVGASLEEIKKKRSQKP
EVRSAQREAAAKEVKARKAANKAAKGSSAAMKAKPMASKQKGGSTMSRAG
AKR*
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mRNA from alignment at S-firma_M_contig879:13009..21007+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig879.19655.1 ID=mRNA_S-firma_M_contig879.19655.1|Name=mRNA_S-firma_M_contig879.19655.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=7999bp|location=Sequence derived from alignment at S-firma_M_contig879:13009..21007+ (Sphaerotrichia firma Sfir_13m male)
CGCCCTGAGCTACCATGGTCATCAAGACGGAGGTGTGCGCGTTCTCGGAC
ACCCGCATCTACCCCGGTCATGGTGTGCGTATGATCCGGAGGGATGGACA
GGTGAGCGCAAGAACCGTCCATGCCAAGGCTGAGAACTCACCTCACCCAC
GAGCCTTACAATTTTCGGCACGGGGCTTGGTCCAAGCTTTGGTGCAGAGC
ACAGGCGGGGAGAGACAGGAGGCAGGCTATCTCGATTGCTCTATCCGATG
TATAGCAATGCGGTCACCTCTGACTCTACGTTGTGGAAAAAACAAAGCTC
TCAGCCGATGTGGTTGCGTTACATCTCATTGGTTTGCCCCCCCCCCCCCA
CCCCGCAGCAGCTCACTGCTGTGGCGACAGAGAACAGCTGCAGGTGCCGA
AGTTGGGTGGCCCGTCTCATCCGCAATCATCCGCATCTGCACGAAAGTTT
CTTTGAATGTCCACTACCTCGCACGGACATAGCCTCTTACCTCCACGCTT
GTATCATTCATCTCTCTCCCTCTGTGTCGGTGTGTTCCGGATGGTCTGTT
GCAGCCCATCACCCTCTTCTCGGCCAAGTGTAAGAGCTTGCTCAAGCAGA
GGAAGAAGCCGGCCAAGCTCACTTGGACCCAGGTAAGGACGCAGGAGACA
CGAACGTGCCCGCGTGTTCAGTGGTCACCTCGCAGAACGACATCAAAACC
CGCCCAAGTTGGCGAGCGGAGAGAGAGATCAACCCTCCGAGATACCGCCG
TCGTATATTGAAACTTGCACACTGCTGCTGTAGGTAAGAGCTGTGTAGCC
AAGTCAAGACGTTGTTGCCTGTCGTCGTTACGGGATGCGTGCCCGCTAGT
CGCACGCACATGTAATGCCCCTAGAGACCGTACGTAGGCATTTTGAGGGA
GACGGAGTGATCTCTGGCCGAGAAACAAACACACATGTCACCATCGTTAG
CTATGCTCGAACGGCGGAGCCAAGCAGTTTTGGGCGTGTCACATACCTCC
TGAAGGTTGGCGGCGAAGACAGCAATTAGGGCTGCAACCAAACCGCAGAG
GGTGTACGCTCGTGAGCCCTTCCTCCTCTGTCATTTCATCGTGTCTACAT
GTATGTACAATGATAGTCTACAGCTAGCAGCAGTGTTGCTGTGTACGTTT
GAAACAACAGTTTCTGCGAGCTTGTTTGATGTCTACAAGAGTATCTCACG
TGTACCGTCTCGTCTCCGTTGGTTCGACTGCTGTTGTGCGCTGTGCGCGT
GCTATTCGCGCGTGTGCCCTTCTCTCTGTCTTTTTTCTGGATTTTTTTCA
GGCATGGAGGCGCCTGAACAAGAAGATCAAGGTCGAGGAGGTCACCCGCC
GTCGGTGAGTTGTCATCTTGACTGCCTCGCACTTGCACGTACTGTACCAC
GAGTATTAGTCTTTGAACGACGAGTAGCGACACACAGCCCCTAAATGACC
AGTTCCTCAACTGGCTACGCACCTAGTCGGGGCCTGCAGAACCTGGAAAC
ACGCGTCTCACAGACACAGAATAGCGGGCGGTGGCTTCGTGTGTGTGCTG
CCTCTGCCGCGAACTGCTACGCCCTCGTTGTGTTTTGGTTTCTCGCGCTC
CGGAACGGGATTGCCGCCGCCTGCGCGCCGGCGGTTCTACCATGTAAAGT
GACCGCGCGTACACCCCTTTTTTCGTTTTTTCTCTCTTTCGTTTGTTGCC
GCCTCGACACGGAAATGAAACGATGAAACTCAACCAAACAACAGCACCCG
CAAGACCACCAAGCTGAACCGCGCGATCGTGGGTGCTTCGCTGGAGGAGA
TCAAGAAGAAGCGCAGCCAGAAGCCGGAGGTCCGCAGCGCGCAGCGCGAG
GCGGCCGCCAAGTGAGTCTAGTGGTACATGCATGCGCATTTCACTCTTGC
CTTTGGGGTCTGTTTCGTGCAGGCGAGTGCCTTTGCCTGCGGTAAGGGTC
TTGTCGAGGGCGCACGGCGTTGTGTGGGGTGGTTTGTGTGTTGTGTCTCG
TGTGAGGGTGTCATGAGTGGGTTGGGGTGGTGGGTGTGGCATCGGTGTCT
GGCCGCTCAAGCATTTGAGGACCTTCGAACCTGAAATGAGAATGAGGACC
GGAGGATCACATGAGCGGTGAGGAGGAACAGTCAGTGGATAGGTGGCTTG
TTCCACGCTCGGAGTAACGTCGACAAAGGCAGAGCCTCAGGTCGCCTTGG
TGCGTCAACGTCAGTGGTTCTTTTGCGCTTCTCTGCGGGACTGGTGCGCG
AGTATGGGCACTCACGCGCGCGGCGCGTGCAGGATGGTTGGCCGGCATTG
TCGACATCGCTTAGGCTGCCTGACCTTGAGTCGAATGAGCACCTGGACGT
GTCGACGTGCTGGAGCAGCGAGGCACGGCGTGGCTTGCCGTAGCTGGCGG
TTCGTCCATGCACGCCTGTCGTGTTTATCCGCGCCCATGCCGTGTGATGT
TGGGGGTTGTTTTATCGCTGTGCTCTCCCTGCACTTTGAATCTAAAGTAC
TCAACTCTGTTACGAAGAGTGCCCCGGATGGGATGGGATGGCTCGATACC
TGGTCTTCGTGCCACATGTTTGAGGGAAGCTCGTGTGCCTGTACATGGGG
CTGGTGGATAGTGCGTGTCTCATCTGTGTATTACCTTTTGTGCTGATTTT
TGTGCCACGCCCAAATGACACTCAACAAGACCTAGACCCGCCGCGAAGAC
ATGGCCTCAAATGTCGCTCTTGTGTGTGTTTTTAGTTTTTAATGTTTTTC
TACAATCGTCAGCCGTATAGGTCGGTCCTGTGAATAAATCGTTCCAGGGG
GACTGTGGTATGTGTACACACTAACCCTCCCCGTCCTGCGTTTGTGTTTT
TGTGCTGTTTTTGCTTGGGGCACGCAGGGAGGTGAAGGCACGCAAAGCCG
CCAACAAGGCCGCCAAGGGCTCCTCCGCCGCCATGAAGGCGAAGCCCATG
GCTTCCAAGCAGAAGGGCGGCAGCACCATGTACGTCGCCTCGCTCGCTAG
CTCAGCAAACCCGCTATTGATAGTCTGAAAAGGGGTTCGGTCGGCTATGT
AGCTTTGGATTTGGGAGAAGGCGACGCGCGCCGGTAGATGCCGAGCGTAC
ATGCTTGTGTGTCTTCTTGCCGTGTGTTGTTGTGGCGGGTTCCAGTTTTG
TCGCTGTTAGTGCCGTGGGTCGGTCGTGTCGCGAGGTCCCAAGTTTCCAG
CTTTGCCCTCAACATGACGATGTTATCTTGTTTTCGCTCCCCCCCTCCGC
CCCTCGATTCCCATCTTGCATTCTACGCCTGTCCAATCCTCTACCGCGTA
GGAGCCGCGCGGGAGCCAAGCGCTAAGTGGTTCCCCACTCCGACGATGAC
AAGCGACGGCTGCCTCGAGGCCAAGATTTCGCAGGAGTCCTTTGCCCCCC
GCGTCCGCATCGACGTTTTGTGTGGTCATGAGGCTTGACGTTTGAGTCAG
TCAAAGCGATTGAACGGTTTTTCCTGCTGCTGTGCGTCTTGTCGATCGTG
TGATGCCACTGCTGTTCTGCTGTTGCGGGCTGGTGTGGGGGTAGGCGCGG
CAAGCGTTTATTTTGTCGCGGCACGGCGCGCGGCTACCCAGCTAAAGCTA
GCTGCACATGGGCCTCGGTTGGTGTTTTTGGCGTTTTTTTGGTGCTCTCA
CGGACCGTTGTTCGTTGCTGCTGCCGCTGCTGCGGCTGCTGTGAAGGAGG
CGCCCGGTGGGCGGGGGCAAAGGGTTAATGAAAAAAAAGAAAGAAAAAAT
ACACACGCGTTGGCGTCGTTTTGCACACGACATTGCTGTCGCGGTTTTGG
CTCCCAGAGCTACTACGTGCATGATGAGGGCTCACTTCGGGTCGGACCGT
CGAATGTGCTTGGCCCAGGAGACGTTTTTGCGCTGCAGGTATCTCCTGCG
CCGACCCTATCCCTAGGGTGGTGACATGACGCTTCCCTGCATGCCATGAC
AGAGTGTCCATCGCGTGACGGATTTTCAACACCCGATATCACTGCTTGCG
ATAGGCTTAAGGGGCGTGGCTGCCACTTGGCTATGCGGGGCTAAGCGGCA
TCGATGGGAAGACACAAACAAACGCGTATAGGAACCTCACATTACACGCG
CTTTCGCATCAAGGAGTTTGTTCTCGAATTGGTGGTGACCTCTTTCGGCC
GGCTGCTGGGGGAAAAGACAGCAGCTTCAAGCCTGCACTCTGAACCCCCA
ATGGCAGGCAGGATTACCAGTGAGCGCGAAAAGTCTCTTGACGGAAAAAG
CGATTCAAGTGGGACCAACTTCGGGGAAACGACCTAGATCGAGACCTCCT
TCAAGAACTACAACATGACTACACAAACCAAATATGAAGTACGGCGTTCA
CGCGGGGGGTGCGCATTCAACAATCTTTTCTCTCGGGCGCTATGTGGCGT
TTTCTGGCACCGTTGCTGCGGCGCGCATATTCCCCTGAAAACGATTAAGC
CATGAGCCGATTTGGTGCACCATGCCCGTAAGCGCATCCTTCGGGCGCAC
GGTTGAGAGAAGGTGCAGTAATCGCCTCCCGTTTTATCCTTTATCACGGG
AATTTGTCCACGCCCATCCGCCACCCCCTGATCGGAAACCACGCCTGGGT
CCATGCAGACACACACACACACACCGACTTGGACGGACACATACATACGC
ACCCCTCCTCCGAGAGGTGGGCGCGGCTTGCAAATGTTTGTTTTCTCGCC
GGGGTGACTAGAAAATTATGAAAAACAAAACACACATCTAGACTATACAT
ATCCAGAACGCGTCCGCACTTAATTACGCGGCACTTAATTACGCGGAAAA
ATCCAGCGTCAACATTCCCAGACTACAACAACTAGTAGTCTACTACACGA
AAAACCTACATGGTACCTGGTTGTAAACCACCGAAGAAATACGAAGTAGA
ACCACAGCCTCGCAAAAAAAAGAGGAGGTTAAAAAGACGTCCATAACGGG
CGCGTTCTGTATACATGTATCTGAGTTCGCCAAAAGCAACGCTTGTCAAG
ACCGCGAAGCCCAAGCACCGTCACCTTAGCGTTTACTCTGTCCCGGCATG
GTGTGGATGCCTCAACTTTTCTAGGATAATTACATGGATGTACGTTACGG
AGTACCCGTACTTTTGGGGGGGGATATACTTACGATACGGTGGGGAATCA
TCGGAAAACAAAGGAGCGAAAAAACACGTGATCGTCCAAGCCAAGCCAAC
GTAGAGATACAGAGAAACAGTATGGTAGCGATGCTGTCGAGCGCCATGCG
TGTTTCACCGCTCCAACTCAAGTTCCAGGCGGTACGTCTTTATCTCCATA
GGGCCGAGAGTGACGGTCCAATCGTCATCGTCACCACTCGCAAGGGGGAC
TTCCCCTTCGCCTTCACCACCACCGACGCCACTGCTGCTTTCTCCGGCAT
CGGCAGCAGTGTCACCAGCCGTTGCCGTCCACTTTAGTCGTTGCGCCCGA
GCAGCAAGAGAACCGCCCCCCGTGAGAGCGATCTCTTCGGCGTCCTTGAG
GGAGTACCCAGCAACGATCTGGGAAAGGTCCACCCACGCCGGCAGGGATA
ACGAGTCGTCTTCTCCCTTGGCGTACCGGTGAGCCAGCCGAACCTGCGTT
TCGGGCGGTGGGGCGGGCAACAGGAAGAACACGGCTGTCACGGGGGGCAC
GAAAACAGCACCACGCGACGGTGCAGTTAAAAAGCTCGTGGAGAAGGAAT
CCTGTAAGCTACGCGCAGGCTTGTTGGCACAGAGGCCCTTGGTTTGTTTC
GCACGGCTGTCGCTCCCTCTCGTGGTGGTACCGTACTTCGGAAGGCAAGG
GGGGGGGGGGGCGGGGGGGGGGGGCACTCATCCAACATACATCGGTATAT
ACGGAAAATAAACAACACGAGCATACCGCTTTCTTCTCACCAGGAGCGTA
AGCTTGTCGCTCCTCTCGCTTGCAGGCCGGACGACCTGGGAGAGTTCCTC
CCAGGGACCCTTGCCGCCGCGCCGGCCCTCTCCGTCAACAAGCTGCATCA
GTGTCATCAACCCCACGTTGGCGGGAAGGGCCTTGACGAGACCTCCCGCT
GCCAAGCCTCCACCACTCGGGAGAGCGGGTTCCTCCGTCTCGAGGGCGTT
GCCTGAACCGCGCTCCCCTCCGGAAACGGGCGGGCGAGCCTCGTCCTCGT
CCGCATCACCTGCTGCTCCTGGTCTTTCCTCTTCGCCGAACGCCACGAGG
AACGGAGTAAACACCTGACGAATCAGGAAAGCCAGGAGGGCGAAAAAACA
CGGCGATCGAAATACATCGCAACACAGCAAGCAAGCAAGCAGGATGTGAG
TCTCGGTCACGGGGCCTGTCTGCGCTTCTTTGAGCGACCGAGAAGAGATG
TGTGCGTACGTGTGCCTACATGTAGCGTCGTCCACCAGAAACATCCGCCC
GTGGAGCAAAACGAGGCGCGCACGCGGACCCACTCGTGAAAAAAAAAACT
CTCAAGCGCCGAAAGAGGCCACGGAACATGCCATCCAACAGCGCGGCAGC
GGCCACTGAAGCGCCTTATTACTTCCGTGAATAAGTCAAGCGTCGACAAT
ACATCCAATAACTACACCTCTTTCTTGGAAGGATGTGTACATTTCTAAGC
CGGTCGGTCTCGCGGAGCTCGTACCAAGGGCCTCAAGGGTCGAGTTTGAT
CGTACCTCGTCCATGAGAGAGCGGACGGCCTTCATCCCGTCCTCCTTCTT
CGATATGACGAGGTAGTGCGTCCCGCGGAACACAAGCCCGTTTCCCTGCC
GCTCCCAGTCCGGGTAATGGCTCATGCCTTCCACGGGGTGTAAGAAAGAC
AAAAAAAAACAGAGACATAAAATATTACGCGCCGGGTGTTCCACAGCGTA
AATTAGCGGAAACTTGACAAAACAGAAATCGTCTCCTGCAGTAGAGCGCA
CCCGGGGCGACATAACGAAAGGTTTCCGGCAGAGGCGCAAAAAATGAACC
GGAACAAACGTCACGCACCCAGCAGTAGCATATCAATAGCTTGAGGGATT
TTGGTTTTGCTTGTTACCGAGTTGGTTCTGCGTCGAAGTTTGCCAAGGGG
CGCACAAGAAACAGCGCAATAGAAATCCGACACACCTTTAGGCGTACAAC
GAAAAAAGGTGTTCACTGCTGAAATCTCGCGGCTCAAAAAAACGCCAGCT
GCGGAGATTTTCAGGTGGTTTGAAAGCCGAGAGCACGGAGCGCGCCGGCA
ATCACTGCCAACCAAAGGCACTACAACGCATCGCGATGTTCATGTTCCAA
CCAAACCACGAGGAGCCGCTCTCGCTGCCGAACAACAAGCACCCTCCCCA
ACTACAAGCTAGATACAAGCAAAGCGCTTTCACGAAAAAAAAACACGGTA
GAAAAACGCGTTCAACTGCTTCTGCTTCTGCTTCTGCTGCTGCTGCTTCT
GCTTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTACGCATGTATGTGGG
CGAGGTTTTCACCGCCGGTAGTCTCGTTGAGCGCCTCGCCGACGCCCCTC
TGGTCCTCCGTCAGAATCCGTCGGTGCGTCATCAGCTCCAGCTCCCCGTC
GGCGAGGGAAGCGCACCCCTGGGCTCGGTCCGTCAGCACTGACAGCTGAT
TGGTTGGTTGGTTTTTCACGACATGGTTGCCGGCGGTGGCGAAAGGGAAG
AGCGCTTCATTCGTGTGGGTAGCGTGGGTGGGGGGGGGGGCGGCGGTGAG
AGCACAAGCAGCCCTCGGCTCGCATCTACGTGGGAAATCAGGATAGGCAG
AACTTGCAGATAGACATCGACGGAAATGTGCATCCGCCCCCAAACCAAGC
GCACGCTCTGGACGACACCCCCACCACCCCTGCACCTCCCCGGCGCCAAC
ACAAAAAAAGCTGCGCAAGACCTAAGTCCGCACCCACACCTGCATCCCAC
CACAGTCGCTTTCGCCACCACCGCCGCCCTCGTCCCTCACAAAGGCGGCC
GCCGTGACCGGGTAGTAGTTCCCCGACACGGGCTGGGTGACGTTGAGGT
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Coding sequence (CDS) from alignment at S-firma_M_contig879:13009..21007+

>mRNA_S-firma_M_contig879.19655.1 ID=mRNA_S-firma_M_contig879.19655.1|Name=mRNA_S-firma_M_contig879.19655.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=924bp|location=Sequence derived from alignment at S-firma_M_contig879:13009..21007+ (Sphaerotrichia firma Sfir_13m male)
ATGGTCATCAAGACGGAGGTGTGCGCGTTCTCGGACACCCGCATCTACCC
CGGTCATGGTGTGCGTATGATCCGGAGGGATGGACAGATGGTCATCAAGA
CGGAGGTGTGCGCGTTCTCGGACACCCGCATCTACCCCGGTCATGGTGTG
CGTATGATCCGGAGGGATGGACAGCCCATCACCCTCTTCTCGGCCAAGTG
TAAGAGCTTGCTCAAGCAGAGGAAGAAGCCGGCCAAGCTCACTTGGACCC
AGCCCATCACCCTCTTCTCGGCCAAGTGTAAGAGCTTGCTCAAGCAGAGG
AAGAAGCCGGCCAAGCTCACTTGGACCCAGGCATGGAGGCGCCTGAACAA
GAAGATCAAGGTCGAGGAGGTCACCCGCCGTCGGCATGGAGGCGCCTGAA
CAAGAAGATCAAGGTCGAGGAGGTCACCCGCCGTCGCACCCGCAAGACCA
CCAAGCTGAACCGCGCGATCGTGGGTGCTTCGCTGGAGGAGATCAAGAAG
AAGCGCAGCCAGAAGCCGGAGGTCCGCAGCGCGCAGCGCGAGGCGGCCGC
CAACACCCGCAAGACCACCAAGCTGAACCGCGCGATCGTGGGTGCTTCGC
TGGAGGAGATCAAGAAGAAGCGCAGCCAGAAGCCGGAGGTCCGCAGCGCG
CAGCGCGAGGCGGCCGCCAAGGAGGTGAAGGCACGCAAAGCCGCCAACAA
GGCCGCCAAGGGCTCCTCCGCCGCCATGAAGGCGAAGCCCATGGCTTCCA
AGCAGAAGGGCGGCAGCACCATGGAGGTGAAGGCACGCAAAGCCGCCAAC
AAGGCCGCCAAGGGCTCCTCCGCCGCCATGAAGGCGAAGCCCATGGCTTC
CAAGCAGAAGGGCGGCAGCACCATGAGCCGCGCGGGAGCCAAGCGCTAAG
AGCCGCGCGGGAGCCAAGCGCTAA
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