prot_S-firma_F_contig1113.1497.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig1113.1497.1
Unique Nameprot_S-firma_F_contig1113.1497.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length387
Homology
BLAST of mRNA_S-firma_F_contig1113.1497.1 vs. uniprot
Match: D7FJK5_ECTSI (UBX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJK5_ECTSI)

HSP 1 Score: 404 bits (1037), Expect = 6.150e-136
Identity = 236/387 (60.98%), Postives = 268/387 (69.25%), Query Frame = 0
Query:    2 IATRLQSEPDNPKYRNIRLLNKTFWERVGSVNGGIAFMSSLGFDLLGQGAGRGPCFQTRSGAPAEADLRQALNLLSARRTQLGESEKQAHQNAAENTAAPGSGFNPFATTFSRKSRTHLQERAEHGLAHLCRSQERQQQRFSKLEERNITILLPREHSQQHQETSGPXXXXXXXXXXXXXXXXXXEGRELELVAQLWRERMAHDDVERFETSAAKKLRLLRFAKVYPYVVLRVRLPGGVFLQGRFNPDETWETVYQVIGESLSMEAGYGTCDRRLCHNFELFMAPPVRVFPRD-TASLKESNVQAPACVLHLRWESENAQVKNWADKLEESMSQ-TMGSSVHPRVLYSSRYDVPEAISSKRPQDHHHAIQGAHAAGLESGSETETAE 386
            IA  L +EP+NPKYR IRLLNK  WERVGSV+GGI+FMS+LGFDL   G G GPCFQ R+GAP E D+RQAL+LLSAR     ES +     AAE      SGFNPF T FSRKSRT LQERAE GLAHL  SQ ++QQRFS LEER +TILLP    QQ  E S                    E RELELVAQLWRERM +D+VERFET AAKKLRLLR AK YPYV+ R+RLPGGV+LQ RFN  E+ ET+YQV G+ LSMEA     D +LCHNFELFMAPP RV PRD T SL++SN+ APACVLHLRW+S  A ++ WA   EE +S+ TM     PRV YSSR DVPEAISS+RPQ+   A +GA   G ES S  E  E
Sbjct:   51 IAENLFNEPENPKYRKIRLLNKVVWERVGSVDGGISFMSALGFDL-NPGTGDGPCFQARTGAPVETDVRQALDLLSARLLHQSESGRP----AAEAEPREASGFNPFTTAFSRKSRTRLQERAEQGLAHLSYSQAKRQQRFSTLEERLVTILLP----QQPHEASAEMEEQEQDGEQGEADA---EQRELELVAQLWRERMGNDEVERFETRAAKKLRLLRTAKSYPYVLCRIRLPGGVYLQARFNSKESLETIYQVFGQVLSMEA---EVDGQLCHNFELFMAPPTRVLPRDSTQSLEDSNILAPACVLHLRWKSGEAGLQTWAQNFEERLSRATMDGLALPRVPYSSRLDVPEAISSRRPQELPPAEEGADDDGSESESAEEAPE 422          
BLAST of mRNA_S-firma_F_contig1113.1497.1 vs. uniprot
Match: A0A835YNR5_9STRA (UBX domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNR5_9STRA)

HSP 1 Score: 117 bits (293), Expect = 7.930e-26
Identity = 127/388 (32.73%), Postives = 173/388 (44.59%), Query Frame = 0
Query:    6 LQSEPDNPKYRNIRLLNKTFWERVGSVNGGIAFMSSLGFDLLGQGAGRGPCFQTRSGAPAEADLRQALNLLSARRTQLGESEKQAHQN------------AAENTAAPGSGFNPFATTFSRKSRTHLQERAEHGLAHLCRSQERQQQRFSKLEERNITILLPR-------------------EHSQQHQETSGPXXXXXXXXXXXXXXXXXXEGRELELVAQLWRERMAHDDVERFETSAAKKLRLLRFAKVYPYVVLRVRLPGGVFLQGRFNPDE-TWETVYQVIGESLSMEAGYGTCDRRLCHNFELFMAPPVRVFPRDTASLKESNVQAPACVLHLRWESENAQVKNWADKLEESMSQTMGSSVH-PRVLYSSR---YDVPEAIS 357
            LQ +      ++IRL+N  FWE VGSV GGI  M +LGF+L  +G GRGP F  R  A     L  A  LL      LG+    +                A   A+  S FNP+A+ FSRK++T +Q+            +     RF K+E+RNIT+L P                      S+    +SG       XXXXXXXX           V Q  R   A    + F ++AA++L  LR A++  Y ++ VR P GV LQ R+N  E T   V  V+  SL  E       R L   F L    P R    D   L+E+ + A A V+HL+WE+   + K+ A  + E+MS      V   R L ++R   YDVP  I+
Sbjct:   22 LQQQNQESAAKSIRLMNSAFWESVGSVPGGIGLMMALGFELEDRGDGRGPAFVLRGDADRSL-LELAQALLQEELAALGKGSVSSSXXXXXXXXXXXXXIGAIAGASAQSDFNPYASAFSRKAKTRVQDXXXXXXXXXXXQRRAHLLRFDKMEDRNITVLQPLTGKPATGAAATSADANASLSSSEADAASSGDHSSEYDXXXXXXXXL---SAATASAVLQAIRSSRARQQTQPFASAAARRLHALRAARLRAYALVNVRFPDGVQLQARYNAQEDTVGHVVDVVRHSLRREV------RHL--PFRLSALGPTRALLPDQL-LQEAGMVAAANVVHLKWEA-GEEAKSSA-AMAETMSVLRAELVQGARCLAAARREQYDVPPPIT 394          
BLAST of mRNA_S-firma_F_contig1113.1497.1 vs. uniprot
Match: A0A485KPD5_9STRA (Aste57867_10017 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KPD5_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 5.670e-9
Identity = 88/320 (27.50%), Postives = 136/320 (42.50%), Query Frame = 0
Query:    2 IATRLQSEPDNPKYRNIRLLNKTFWERVGSVNGGIAFMSSLGFDLLGQGAGRGPCFQTRSGAPAEADLRQALNLLSARRTQLGESEKQAHQNAAENTAAPGSGFNPFATTFSRKSRTHLQERAEHGLAHLCRSQERQQQRFSKLEERNITILLPR---EHSQQHQETSGPXXXXXXXXXXXXXXXXXXEGRELELVAQLWRERMAHDDVER---FETSAAKKLRLLRFAKVYPYVVLRVRLPGGVFLQGRFNPDETWETVYQVIGESLSMEAGYGTCDRRLCHNFELFMAPPVRVFPRD-TASLKESNVQAPACVLHLRW 314
            I   L S PD  KYR+IR+ N  F E VG   GG+AF+ S+GF +           +T S       LR +L++L      LG    Q        TAAP   F+ F    +R      Q R            ++++Q    +   NI   +PR    H Q    +SG                      + +L+A   R R   D+ E+   F TSA ++L  ++   V+   VLR+R P  V LQ  F+P+ET   V +++ ESL+ +             F L++ PP +    + T++L + N+  PA +++L W
Sbjct:  264 IVCNLLSNPDEAKYRSIRVSNPKFTESVGKHIGGMAFLHSIGFAMDESKTHLVLANETTSA------LRLSLDVLHVEADDLGIDRMQ-RPVVVVPTAAPTE-FDAFKPVITR---VQAQPRGASITEIRLEDLKKKEQAILAV---NIPPRMPRIYFPHEQLPAFSSG-------------VPRGSGPSSDSQLLAHALRARQ--DEAEKNQSFRTSAMRELDEMQKKAVFQSTVLRIRFPDQVVLQATFHPNETIAAVVKLLHESLNDDVPA----------FYLYVTPPKQTLNLESTSTLTQLNL-VPAALVYLAW 543          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1113.1497.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FJK5_ECTSI6.150e-13660.98UBX domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YNR5_9STRA7.930e-2632.73UBX domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A485KPD5_9STRA5.670e-927.50Aste57867_10017 protein n=1 Tax=Aphanomyces stella... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001012UBX domainPFAMPF00789UBXcoord: 228..301
e-value: 1.9E-5
score: 24.7
IPR001012UBX domainPROSITEPS50033UBXcoord: 225..259
score: 9.086
NoneNo IPR availableGENE3D1.20.58.2190coord: 1..80
e-value: 4.5E-10
score: 41.0
NoneNo IPR availableGENE3D3.10.20.90coord: 221..312
e-value: 2.8E-7
score: 32.3
NoneNo IPR availablePANTHERPTHR23153UBX-RELATEDcoord: 8..320
IPR018997PUB domainPFAMPF09409PUBcoord: 6..49
e-value: 6.0E-11
score: 42.1
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 211..304
IPR036339PUB-like domain superfamilySUPERFAMILY143503PUG domain-likecoord: 2..79

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1113contigS-firma_F_contig1113:5968..8068 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1113.1497.1mRNA_S-firma_F_contig1113.1497.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig1113 5839..8280 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig1113.1497.1 ID=prot_S-firma_F_contig1113.1497.1|Name=mRNA_S-firma_F_contig1113.1497.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=387bp
MIATRLQSEPDNPKYRNIRLLNKTFWERVGSVNGGIAFMSSLGFDLLGQG
AGRGPCFQTRSGAPAEADLRQALNLLSARRTQLGESEKQAHQNAAENTAA
PGSGFNPFATTFSRKSRTHLQERAEHGLAHLCRSQERQQQRFSKLEERNI
TILLPREHSQQHQETSGPPDGGMVKPGEEEEEEEEEEGRELELVAQLWRE
RMAHDDVERFETSAAKKLRLLRFAKVYPYVVLRVRLPGGVFLQGRFNPDE
TWETVYQVIGESLSMEAGYGTCDRRLCHNFELFMAPPVRVFPRDTASLKE
SNVQAPACVLHLRWESENAQVKNWADKLEESMSQTMGSSVHPRVLYSSRY
DVPEAISSKRPQDHHHAIQGAHAAGLESGSETETAE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036339PUB-like_dom_sf
IPR029071Ubiquitin-like_domsf
IPR018997PUB_domain
IPR001012UBX_dom