prot_S-firma_F_contig110.1329.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig110.1329.1
Unique Nameprot_S-firma_F_contig110.1329.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length316
Homology
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BLAST of mRNA_S-firma_F_contig110.1329.1 vs. uniprot
Match: A0A6H5JB60_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB60_9PHAE)

HSP 1 Score: 289 bits (740), Expect = 2.790e-88
Identity = 181/321 (56.39%), Postives = 197/321 (61.37%), Query Frame = 0 
Query:    1 MFCGVVDGTRVSAVQLFDLRSTAGAVRKLRAAARQRQPIHSICHTADDLLLCATMGGVWAWGGGTKGAGDGGGSG----EELA-ERLQIQAGPCCSLSGATSXXXXXXXXSGSVSGVARQGRFLVSTRGSSASHAVFGLAAPLAASXXXXXXXXXXXXXXXXXXXXXXXXXGCPEGPRHRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------QQLWSKRWTRFPGVMKGHQSQQTLSRSLLWAPSPGAGLLIAGGDERTNQPWIWTASSGGVCSRLASHRSPVLDVASLQDGSSGKGLFAAVSQGEMNVYQT 310
            MFCGVVDGTR SAVQLFDLRSTAGAVRKLRAAA QRQPIHSICHTADD+L CATMGGVWAWGGGTK   +GGGS     EELA E+LQIQAG CCSLS +          + S S    Q  FLVSTRGSSASHAVF LA+  A+S                            EG R  G                                        ++ W+ RWTR P V +GHQSQ TLSRSLLW PSPG GLLIAGGDERT QPW+W A +G VC+RLASHRSPVLD A LQD SSGKGL +AVSQ E+ VYQT
Sbjct:  474 MFCGVVDGTRTSAVQLFDLRSTAGAVRKLRAAASQRQPIHSICHTADDVLCCATMGGVWAWGGGTK---EGGGSEAWDPEELAAEKLQIQAGACCSLSQSHGT-------AASSSSDVDQQPFLVSTRGSSASHAVFRLASASASSRQAATAAGVRENPTAESHKDQEVAV---EGRRDAGGYVAMEEDQSERFECEHATERQPSSFGFGSSLARLSAMVARRSWADRWTRSPRVAQGHQSQHTLSRSLLWDPSPGDGLLIAGGDERTKQPWMWDALTGDVCNRLASHRSPVLDFACLQDYSSGKGLLSAVSQSEIKVYQT 781
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BLAST of mRNA_S-firma_F_contig110.1329.1 vs. uniprot
Match: D8LKW0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW0_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 3.100e-59
Identity = 139/268 (51.87%), Postives = 150/268 (55.97%), Query Frame = 0 
Query:    1 MFCGVVDGTRVSAVQLFDLRSTAGAVRKLRAAARQRQPIHSICHTADDLLLCATMGGVWAWGGGTK--GAGDGGGSGEELAERLQIQAGPCCSLSGATSXXXXXXXXSGSVSGVARQGRFLVSTRGSSASHAVFGLAAPLAASXXXXXXXXXXXXXXXXXXXXXXXXXGCPEGPRHRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ-------QLWSKRWTRFPGVMKGHQSQQTLSRSLLWAPSPGAGLLIAGGDERTNQ 259
            MFCGVVDGTR SAVQLFDLRSTAGAVRKLRAAA QRQPIHSICHTADD+L CATMGGVWAWGGGTK  G  +     E+ AE+LQIQAG CCSLS +          + S S V +Q  FLVSTRGSSASH VF LA   A S                            EG R  G                                  +       + W+ RWTR P V +GHQSQ TLSRSLLW PSPG GLLIAGGDERT Q
Sbjct:  399 MFCGVVDGTRTSAVQLFDLRSTAGAVRKLRAAASQRQPIHSICHTADDVLCCATMGGVWAWGGGTKEGGVSEAWDREEQAAEKLQIQAGACCSLSQSHGTA------AASSSDVDQQ-PFLVSTRGSSASHTVFRLAPASACSRQAAAAAGVGENPTAESHKDQEVAV---EGQRDAGGNVAMEEDQSEEKFECEHAVERQPSSLGFDTSLARLSAVVARRSWADRWTRSPRVAQGHQSQHTLSRSLLWDPSPGDGLLIAGGDERTKQ 656
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig110.1329.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JB60_9PHAE2.790e-8856.39RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LKW0_ECTSI3.100e-5951.87RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR16047:SF7E3 UBIQUITIN-PROTEIN LIGASE RFWD3coord: 10..309
IPR037381E3 ubiquitin-protein ligase RFWD3PANTHERPTHR16047RFWD3 PROTEINcoord: 10..309

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig110contigS-firma_F_contig110:1005..3724 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig110.1329.1mRNA_S-firma_F_contig110.1329.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig110 369..4383 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig110.1329.1 ID=prot_S-firma_F_contig110.1329.1|Name=mRNA_S-firma_F_contig110.1329.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=316bp
MFCGVVDGTRVSAVQLFDLRSTAGAVRKLRAAARQRQPIHSICHTADDLL
LCATMGGVWAWGGGTKGAGDGGGSGEELAERLQIQAGPCCSLSGATSSSS
SSSGGSGSVSGVARQGRFLVSTRGSSASHAVFGLAAPLAASAAAAAARGE
GGAGGGGEEEGIVGGGGCPEGPRHRGGRHEAGAQEGSLQQDWRQQQAGRG
APGGGAAAGGQQLWSKRWTRFPGVMKGHQSQQTLSRSLLWAPSPGAGLLI
AGGDERTNQPWIWTASSGGVCSRLASHRSPVLDVASLQDGSSGKGLFAAV
SQGEMNVYQTLVLDT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037381RFWD3