prot_S-firma_F_contig10888.1179.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10888.1179.1
Unique Nameprot_S-firma_F_contig10888.1179.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length192
Homology
BLAST of mRNA_S-firma_F_contig10888.1179.1 vs. uniprot
Match: D7G0Q8_ECTSI (Hypothetical UPF0043 protein slr0305 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0Q8_ECTSI)

HSP 1 Score: 251 bits (641), Expect = 2.620e-78
Identity = 137/191 (71.73%), Postives = 152/191 (79.58%), Query Frame = 0
Query:    1 MVDGEGGVGGDLALVGTFFVVVLVGTFASQVASRTWEELNAEAQRSVPGGE----PPAEGSDPSAAPELK---DGLDWLELWGVERSSLPEWFTSWKAKDAAVRNKILGVVRQEWAYMQDREALVEERGGEALADESKSGLPPPGPPLLDESGRFFDLGAYVSESTVFPFVLIESFWKYSDPKSAASEVGV 184
            MVDGE GVGGDLALVGTFFVVVLVGTFASQVASRTWEELNAEA++S+P       PP  G  PSA+ E     DGL+WL+LWG+ERSSLP+WFT+WKAKD AVR+KI GVV+QE  YM+ REA   E    A     +SGLPPPGPPLLDESGRFFDLGAYVSESTVFPFVLIESFW+YS+PK A  E GV
Sbjct:  315 MVDGEAGVGGDLALVGTFFVVVLVGTFASQVASRTWEELNAEAEKSMPTAAETNTPP--GGVPSASQEGGGGGDGLEWLDLWGIERSSLPDWFTTWKAKDNAVRSKIRGVVKQEREYMEGREAAEGEGVDGAELPPKESGLPPPGPPLLDESGRFFDLGAYVSESTVFPFVLIESFWEYSNPKLARGEEGV 503          
BLAST of mRNA_S-firma_F_contig10888.1179.1 vs. uniprot
Match: A0A836CC84_9STRA (Hypothetical UPF0043 protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC84_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.830e-15
Identity = 62/168 (36.90%), Postives = 81/168 (48.21%), Query Frame = 0
Query:   11 DLALVGTFFVVVLVGTFASQVASRTWEELNAEAQRSVPGGEPPAEGSDPSAAPELKDGLDWLELWGVERSSLPEWFTSWKAKDAAVRNKILGVVRQEWAYMQDREALVEERGGEALADESKSGLPPPGPPLLDESGRFFDLGAYVSESTVFPFVLIESFWKYSDPKSA 178
            D  L+GTF V VL+GT AS++A RTW+EL+AEA  S  GG+      D +AAP     L W E+ G+ R  LP     W  K +A    I GVV++EW      E L   R G                  L  +G   D+G Y++ES  F   L  +  +YSDP  A
Sbjct:  263 DAVLLGTFAVAVLIGTLASELAGRTWDELSAEASSSG-GGD-----GDAAAAP-----LRWNEMMGIARDELPPPVRQWDDKTSAAEGLIWGVVQEEW------ERLQRNRSGXXXXXXXXXXXXXX---XLTAAGGV-DMGVYIAESWAFNGALFRALGEYSDPAKA 409          
BLAST of mRNA_S-firma_F_contig10888.1179.1 vs. uniprot
Match: A0A7S2UW30_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UW30_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.950e-7
Identity = 52/166 (31.33%), Postives = 75/166 (45.18%), Query Frame = 0
Query:   11 DLALVGTFFVVVLVGTFASQVASRTWEELNAE--AQRSVPGGEPPAEGSDPSAAPELKDGLDWLELWGVERSSLPEWFTSWKAKDAAVRNKILGVVRQEW------AYMQDREALVEERGGEALADES-KSGLPPPGPPLLDESGRFFDLGAYVSESTVFPFVLIE 167
            D  L+ TF   +LVGT A+QVA++TW+EL +E  A+++   GE                 L W E+WG++ SSLP     W     A   +I     +EW      A     +A  EE+  + +  ES    L PP     +E    F     + ES+VF F LI+
Sbjct:  147 DTILLLTFTATILVGTLATQVATKTWDELQSETKAEQAGEAGE-----------------LTWQEMWGIKSSSLPGGEDFWDETVGAAWQRIQFAADEEWDKVLSEAKTPKDQAAPEEQNKDGIMQESIDESLIPPRFSKNNEGKMTFKES--LVESSVFTFALID 293          
BLAST of mRNA_S-firma_F_contig10888.1179.1 vs. uniprot
Match: W7TKV8_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKV8_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.150e-6
Identity = 46/134 (34.33%), Postives = 59/134 (44.03%), Query Frame = 0
Query:    4 GEGGVGGDLA----LVGTFFVVVLVGTFASQVASRTWEELNAEAQRSVPGGEPPAEGSDPSAAPELKDG-----LDWLELWGVERSSLPEWFTSWKAKDAAVRNKILGVVRQEWAYMQDREALVEERGGEALAD 128
            GEGG G D+A    L GTFF++VLVG  A Q+A R ++E   EA  +VP                LK+G      DW  + GVER     W   W   + AV +        EW  + +  A  EE  GE   D
Sbjct:  125 GEGGGGVDIAQTVILSGTFFLLVLVGALAGQIAGRAFDEAKQEALMTVP----------------LKEGETEAQWDWWTMMGVERPKGNVWTEEWGRLETAVED--------EWKKLMEDLAAQEEETGERQRD 234          
BLAST of mRNA_S-firma_F_contig10888.1179.1 vs. uniprot
Match: A0A4D9CWB6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWB6_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.320e-6
Identity = 47/138 (34.06%), Postives = 60/138 (43.48%), Query Frame = 0
Query:    4 GEGGVGGDLA----LVGTFFVVVLVGTFASQVASRTWEELNAEAQRSVPGGEPPAEGSDPSAAPELKDG-----LDWLELWGVERSSLPEWFTSWKAKDAAVRNKILGVVRQEWAYMQDREALVEERGGEALADESKS 132
            GEGG G D+A    L GTFF++VLVG  A Q+A R ++E   EA  +VP                LK+G      DW  + GVER     W   W   + AV +        EW  + +  A  EE  GE   D   S
Sbjct:  227 GEGGGGVDIAQTVILSGTFFLLVLVGALAGQIAGRAFDEAKHEALTTVP----------------LKEGETEAQWDWWTMMGVERPKGNVWTEEWGRLETAVED--------EWKKLMEDLATQEEETGERQRDRISS 340          
BLAST of mRNA_S-firma_F_contig10888.1179.1 vs. uniprot
Match: A0A7S0UHY6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UHY6_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.240e-6
Identity = 53/182 (29.12%), Postives = 80/182 (43.96%), Query Frame = 0
Query:    1 MVDGEGGVGG--DLALVGTFFVVVLVGTFASQVASRTWEELNAEAQRSVPGGEPPAEGSDPSAAPELKDGLDWLELWGVERSSLPEWFTSWK--AKDAAVRNKILGVVRQE---WAYMQDREALVEERGGEALADESKSGLPPPGPPLLDESGRFFDLGAYVSESTVFPFVLIESFWKYSDP 175
            +VDG    GG  D  L+G   + VL+G FASQ+AS TW+ +  E +      E  A+  +  A  + +D     E++G+E   LP+W   ++   +DA VR   L V   +   W   +       +     L +     L  P  P L E  +  D GA   +  V   +L   F KY+DP
Sbjct:  143 LVDGTANDGGMQDYLLIGVLGLSVLIGVFASQLASETWDAVQREEEA-----EQKAKKLEEGATEKKEDEGITKEIFGIE---LPQWLVGFQYALQDADVRMNELVVKEFDAKVWNMTEGSTMFGYDPSKSNLPESRNPALLDPNSPELTEKYQGVDFGATTCDGLVLSPILFTYFLKYADP 316          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10888.1179.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G0Q8_ECTSI2.620e-7871.73Hypothetical UPF0043 protein slr0305 n=2 Tax=Ectoc... [more]
A0A836CC84_9STRA1.830e-1536.90Hypothetical UPF0043 protein n=1 Tax=Tribonema min... [more]
A0A7S2UW30_9STRA3.950e-731.33Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7TKV8_9STRA1.150e-634.33Uncharacterized protein n=2 Tax=Nannochloropsis ga... [more]
A0A4D9CWB6_9STRA1.320e-634.06Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S0UHY6_9STRA3.240e-629.12Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 33..191
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..32
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10888contigS-firma_F_contig10888:3015..4109 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10888.1179.1mRNA_S-firma_F_contig10888.1179.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10888 295..4577 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10888.1179.1 ID=prot_S-firma_F_contig10888.1179.1|Name=mRNA_S-firma_F_contig10888.1179.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=192bp
MVDGEGGVGGDLALVGTFFVVVLVGTFASQVASRTWEELNAEAQRSVPGG
EPPAEGSDPSAAPELKDGLDWLELWGVERSSLPEWFTSWKAKDAAVRNKI
LGVVRQEWAYMQDREALVEERGGEALADESKSGLPPPGPPLLDESGRFFD
LGAYVSESTVFPFVLIESFWKYSDPKSAASEVGVGEEGAVV*
back to top