prot_S-firma_F_contig1085.1138.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig1085.1138.1
Unique Nameprot_S-firma_F_contig1085.1138.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length914
Homology
BLAST of mRNA_S-firma_F_contig1085.1138.1 vs. uniprot
Match: A0A6H5KU24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU24_9PHAE)

HSP 1 Score: 454 bits (1169), Expect = 1.610e-137
Identity = 429/973 (44.09%), Postives = 501/973 (51.49%), Query Frame = 0
Query:    2 NLAGLVQKAGAASVESPTVVXXXXXXXXXXXXXXXCVCGGWRLSCAEQGSSAAGAATIIPR-GAGPVFPSVVPPRDRANNDRRSLPGDSTAAAGGRKSKAXXXXXXXXXXXXXXGANAVSRGGSGREFP------KDASEGGLGVRLPERARSETAGRSSDRGXXXXXXXXGIRTSADRALAKRLPSYQELVGYSRSDSGIV------APSTSKHRHDPSADSSVEMMNPMFNSGGGLEDGEGSEGG---------------------WADRMSDGAGGASGRRQRRNFDRYMLSRSPRKSA-GPG----SSSGFNGSGXXXXXXXXXXXXXXXXXXXXXVFXXXXXXXSGSGSVSMKSSIDAHLSSSGGRFYSNSEPAATIPEGQVANPNXXXXXXXXXXKSGSSEDDTLPGDTGAGVV-----------------APRPRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDASDQSAAANATRAPVLAPGAPTIDGHARRFGGKKFERSSSSFASTSFESGTTGGN-RKRRSDQARVMANWRRSTGSQGFAHSRSR-TMSRASSSGGEGGVVFGPPSGXXXXXXXXXXXXXXXXXXXXGKVRGMLFRRNSSDASGSFLSQGSGSVGSWASPTTRGPGPPPNLRYLRAARSRSQSSSQMDFEVPAGFGGFPAAAEGPDGRSVIVGDSSNLGSNWVPTQTARGGWPLDLPARSAMPRWWIKYTSRSG-DSSQ--------SDLAAGAPPDLVLAAAERAKAAEREAAAARVEAVFGDGNHLNERRFSNADGGSNIVDFRAFVRAGGSGTSSFDSRASESGRRSSASTVDEEGSDASVSAASSPGNGREKRNRGGDPDGADLP--GSGSGFSVGRTDGGGXXXXXXXXXXRWXXXXAGRK-PTVRSRSSSSAGSAATPLTSAELKKHLDFDFEDE-GELEEDPVSFVRVSERVSKINAKVVGKAGVR 903
            NL GL QK GAA   SP VV               C+CGGWRLSCAEQGSSAA AA IIPR  + P FPSVV P    ++    L   ST      + KA              G ++VSR G            + AS  G  + +   ARSE++                +  S    + +RLPS QELV YSRSDS         + +  K    PS DSS+ ++NPMF  G G ED   SE                         DR+               F RY+LS+SPR S  GPG    SS G  G                       VF        GSGS SM+SSIDAHL+++GGRFYSN++    IP    A+             SGSS    L GD   G+                  A  P R            XXXXXXXXXXXXXXXXXXXX     A  ++ A    RAPVLAPGAPTIDGH RRFG    E+S SSFASTSFES  +  + R+RRSDQARV+A+WR STGS GF+ SRSR TMSR SSSGG        P+                      + +  +FRR SS+A    +S  S    S A+    G G    L+ L    SRS  S Q+D ++  GFG FPAA EGPDG+  IVGDS  LG+NWV  Q ARGGWPLDLPA SAMPRWWI++ SRSG DSS         SD AAGAPPDLVLAA ERAKAAEREAAAARVEA+FGD NHLNERRFSNADGGSNI DFRAFVRA  SGTSSFDSR S  G R   S+V++E SD         G+  +  +        D    GSG G   G+  GGG                 GRK P+     SSS G A TPLTSAELK++L+FDFEDE G L  DPVSF+RVSERV+ INAKV G+  ++
Sbjct:  544 NLTGLAQKTGAADTGSPLVVVSAGIFISLMLALAVCLCGGWRLSCAEQGSSAAAAAAIIPRRDSRPAFPSVVGPSVGGDHHDGGLGSSSTRG----RQKAPPLRHA--------GPDSVSRSGXXXXXXXXXXDTESASVPGRDIFVTAAARSESS---------------AVPDSGRGQVTRRLPSLQELVRYSRSDSSXXXXXXXXSSAGMKLDRQPS-DSSICVVNPMFEDGSG-EDRVPSETAAXXXXXXXXXXXXXXXXXXXXXQDRLG-------------QFQRYLLSKSPRTSGTGPGFSRNSSRGERGGSGGPGTSR--------------VFDTCG----GSGSASMRSSIDAHLTAAGGRFYSNTD-GGGIPVPMAASSEARSQVGRKW--SGSSSSRQLHGDGNDGLSSFSAGDRGTADRRQGQHASAPCRVETVVTSSTVAAXXXXXXXXXXXXXXXXXXXXNKHPSAMSRARAP--PRAPVLAPGAPTIDGHIRRFGAPTMEQSPSSFASTSFESRASETSWRRRRSDQARVLASWRNSTGSTGFSGSRSRRTMSRVSSSGGVTPTNQQTPA------------------PVGNRGQEKMFRRKSSEALNGGVSFVSLQSNSSATSGGGGKGGSAELQRLWPEHSRSYPSGQIDLKMLQGFGDFPAATEGPDGQKPIVGDSRTLGTNWV-GQNARGGWPLDLPAGSAMPRWWIEHASRSGGDSSHGPGGGGEGSDFAAGAPPDLVLAAQERAKAAEREAAAARVEAMFGDENHLNERRFSNADGGSNIDDFRAFVRARASGTSSFDSRCSPEGGRDE-SSVEDEASDGGSXXXXXNGSYWDTGDDAASAFSLDQSDNGSGGGLRYGKMRGGG-----------------GRKLPSAIGSRSSSVGGAETPLTSAELKRYLNFDFEDEDGSLAGDPVSFIRVSERVNSINAKVWGRGSMQ 1414          
BLAST of mRNA_S-firma_F_contig1085.1138.1 vs. uniprot
Match: D7FRU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRU6_ECTSI)

HSP 1 Score: 323 bits (827), Expect = 2.200e-89
Identity = 254/453 (56.07%), Postives = 285/453 (62.91%), Query Frame = 0
Query:  462 RSSSSFASTSFESGTTGGNR-KRRSDQARVMANWRRSTGSQGFAHSRSR-TMSRASSSGGEGGVVFGPPSGXXXXXXXXXXXXXXXXXXXXGKVRGMLFRRNSSDASG---SFLSQGSGSVGSWASPTTRGPGPPPNLRYLRAARSRSQSSSQMDFEVPAGFGGFPAAAEGPDGRSVIVGDSSNLGSNWVPTQTARGGWPLDLPARSAMPRWWIKYTSRSGDSSQSDL-----------AAGAPPDLVLAAAERAKAAEREAAAARVEAVFGDGNHLNERRFSNADGGSNIVDFRAFVRAGGSGTSSFDSRASESGRRSSASTVDEEGSDASVSAASSPGNGREKRNRGGDPDGADLPGSGSGFSVGRTDGGGXXXXXXXXXXRWXXXXAGRK--PTVRSRSSSSAGSAATPLTSAELKKHLDFDFEDE-GELEEDPVSFVRVSERVSKINAK 895
            +S SSFASTSFESG +  +R +RRSDQARV+A+WR STGS GF+ SRSR TMSR SSSG  GGV                            + RG +FRR SS+A     SFLS  S S    A+    G G P  LR LR+ RSRS SS Q+D ++  G G FPAA EGPDG+  IVGDS  LG+NWV  Q ARGGWPLDLPA SAMPRWWI++ SRSG  S   L           AAGAPPDLVLAA ERAKAAEREAAAARVEA+FGD NHLNERRFSNADGGSNI DFRAFVRA  SGTSSFDSR    G R           +ASV               G   D  D   +GS FS  ++D    XXXXXXXXX  XXXX  RK    + SRSS   G A TPLTSAELK++L+FDFED+ G L  DPVSF+RVSERV+ INAK
Sbjct: 1372 QSPSSFASTSFESGASETSRSRRRSDQARVLASWRNSTGSTGFSGSRSRRTMSRVSSSG--GGVT---------------PTDQQTPAPVGNRGRGKMFRRKSSEALNGGVSFLSLQSNSS---ATSGGGGKGGPTELRRLRSERSRSYSSGQIDLKMLQGLGNFPAATEGPDGQKPIVGDSRTLGTNWV-GQNARGGWPLDLPASSAMPRWWIEHASRSGGDSSHSLGVGXXXXXXXXAAGAPPDLVLAAQERAKAAEREAAAARVEAMFGDENHLNERRFSNADGGSNIDDFRAFVRARASGTSSFDSRCPPEGGR----------DEASVGDXXXXXXXXXXXXNGAYWDTGDD--AGSTFSQDQSD---NXXXXXXXXXXXXXXXXXRKLPSAIGSRSSPVGGGAETPLTSAELKQYLNFDFEDDDGSLAGDPVSFIRVSERVNSINAK 1788          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1085.1138.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KU24_9PHAE1.610e-13744.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRU6_ECTSI2.200e-8956.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 693..713
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..44
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 45..913
NoneNo IPR availableTMHMMTMhelixcoord: 20..42

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1085contigS-firma_F_contig1085:289..3437 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1085.1138.1mRNA_S-firma_F_contig1085.1138.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig1085 268..5336 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig1085.1138.1 ID=prot_S-firma_F_contig1085.1138.1|Name=mRNA_S-firma_F_contig1085.1138.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=914bp
MNLAGLVQKAGAASVESPTVVILAAALICLLLLMVVCVCGGWRLSCAEQG
SSAAGAATIIPRGAGPVFPSVVPPRDRANNDRRSLPGDSTAAAGGRKSKA
PPRRMWSSDRHMMTGANAVSRGGSGREFPKDASEGGLGVRLPERARSETA
GRSSDRGGGSGGGGGGIRTSADRALAKRLPSYQELVGYSRSDSGIVAPST
SKHRHDPSADSSVEMMNPMFNSGGGLEDGEGSEGGWADRMSDGAGGASGR
RQRRNFDRYMLSRSPRKSAGPGSSSGFNGSGSGAGSAGGAGGGGGGVGER
AAVFSGVFSSVSGSGSVSMKSSIDAHLSSSGGRFYSNSEPAATIPEGQVA
NPNPADNIPPGRGKSGSSEDDTLPGDTGAGVVAPRPRRRTTELSSGSGSG
SSSSAKTATSAAAAAAAAAAAAALDASDQSAAANATRAPVLAPGAPTIDG
HARRFGGKKFERSSSSFASTSFESGTTGGNRKRRSDQARVMANWRRSTGS
QGFAHSRSRTMSRASSSGGEGGVVFGPPSGVGAGTGAGAGGGGGGGDDGG
GKVRGMLFRRNSSDASGSFLSQGSGSVGSWASPTTRGPGPPPNLRYLRAA
RSRSQSSSQMDFEVPAGFGGFPAAAEGPDGRSVIVGDSSNLGSNWVPTQT
ARGGWPLDLPARSAMPRWWIKYTSRSGDSSQSDLAAGAPPDLVLAAAERA
KAAEREAAAARVEAVFGDGNHLNERRFSNADGGSNIVDFRAFVRAGGSGT
SSFDSRASESGRRSSASTVDEEGSDASVSAASSPGNGREKRNRGGDPDGA
DLPGSGSGFSVGRTDGGGGSGGSGTGGRRWGSGGAGRKPTVRSRSSSSAG
SAATPLTSAELKKHLDFDFEDEGELEEDPVSFVRVSERVSKINAKVVGKA
GVRHSSPMPWPAP*
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