prot_S-firma_F_contig1070.951.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig1070.951.1
Unique Nameprot_S-firma_F_contig1070.951.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length868
Homology
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BLAST of mRNA_S-firma_F_contig1070.951.1 vs. uniprot
Match: A0A6H5J6J5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J6J5_9PHAE)

HSP 1 Score: 295 bits (755), Expect = 1.090e-83
Identity = 228/349 (65.33%), Postives = 260/349 (74.50%), Query Frame = 0 
Query:   80 AKSSLGVIRRKAVADLDSKNFVQKVQCTRPMDWRRVLQYLETAEQASGAQPSTGGMTVYMYAACISRMGKARRWEEALDILGRMRARGHRPNAYCMXXXXXXXXXXXXXXXXXXXXEQRRKDLG-GKPADQQXXXXXXXXXXXXXXXXXXXXXXXXTKADGTTPHPYSYTXXXXXXXXXXXXXXXXXXXXXMRQIRLLSGGFIDAFCVKVTVVALAKSGRLKQALKIYVEMLAALPVK-DGDKYALGLETLREASLACGRKGDWKASLRLLDEMRAVAITPEGGCYETAMKCCVMNHXXXXXXXXXXXXXEVYGVQPGMGAYSLAINAATSVSKYPQAVKMLATMRQNG 426
            A   LGVI+R  +A L SKNFVQKVQC RP DWR VL+ L+ AE+AS AQPS   +T +MYA+CISRM KARRWEEALDIL RMRARG +PN+YC+   XXXXXXXXXXXXXXXXX  RR+DLG G P D+ XXXXXXXXXXXXXXXXXXXXXXX  K  G TPHP+   XXXXXXXXXXXXXXXXXXXXXMRQ R+ + GFID +CVK T+ ALAKSG+ KQALKIY+EML  LP   D  +  L L+ LR+AS ACGR GDWKASL+LLDEMRAVAITPE GCY+ AM+ CV N                YG+ P +  Y +AI+AA   S +P+A KML  MRQNG
Sbjct:   25 AARRLGVIKRANIAGLHSKNFVQKVQCMRPTDWRGVLRELQIAEEASDAQPSESRITTFMYASCISRMAKARRWEEALDILQRMRARGLQPNSYCVSSAXXXXXXXXXXXXXXXXXXXRREDLGEGSPVDEXXXXXXXXXXXXXXXXXXXXXXXXELKVGGKTPHPFXXXXXXXXXXXXXXXXXXXXXXXXMRQARVRTDGFIDVYCVKTTITALAKSGKWKQALKIYLEMLDVLPANSDSPEANLNLDALRDASFACGRAGDWKASLKLLDEMRAVAITPESGCYKAAMQSCVRNRQWERATCLIDEMTLTYGMVPDLETYQVAISAAGCASLWPKATKMLRQMRQNG 373
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1070.951.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J6J5_9PHAE1.090e-8365.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 185..205
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 610..848
coord: 512..669
coord: 136..311
coord: 293..520
coord: 476..611
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 573..606
e-value: 4.8E-6
score: 24.4
coord: 790..818
e-value: 0.0017
score: 16.4
coord: 138..172
e-value: 2.4E-7
score: 28.5
coord: 433..465
e-value: 1.5E-8
score: 32.3
coord: 503..536
e-value: 0.0013
score: 16.8
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 559..618
e-value: 2.1E-5
score: 24.5
coord: 488..549
e-value: 1.2E-7
score: 31.7
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 245..272
e-value: 0.0031
score: 17.6
coord: 176..196
e-value: 1.3
score: 9.4
coord: 215..239
e-value: 0.16
score: 12.3
coord: 139..167
e-value: 0.006
score: 16.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 243..277
score: 8.089
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 787..821
score: 8.44
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 136..170
score: 10.479
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 535..569
score: 10.183
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 570..600
score: 9.745
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 324..358
score: 7.289
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 282..312
score: 6.906
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 171..206
score: 8.276
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 606..641
score: 6.544
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 500..534
score: 10.633
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 642..672
score: 6.149
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 208..242
score: 8.835
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 679..716
score: 5.821
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 395..429
score: 7.541
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 359..389
score: 5.919
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 430..464
score: 12.726
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 752..786
score: 7.092
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 465..499
score: 8.758
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 717..751
score: 8.188
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 460..530
e-value: 7.5E-10
score: 40.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 205..283
e-value: 1.6E-12
score: 49.1
coord: 99..204
e-value: 1.0E-16
score: 62.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 676..864
e-value: 9.2E-24
score: 86.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 554..675
e-value: 9.1E-26
score: 93.1
coord: 284..459
e-value: 5.2E-29
score: 103.7
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 644..815
e-value: 1.6E-6
score: 27.7
coord: 292..459
e-value: 6.7E-8
score: 32.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1070contigS-firma_F_contig1070:12195..14798 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1070.951.1mRNA_S-firma_F_contig1070.951.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig1070 12166..15734 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig1070.951.1 ID=prot_S-firma_F_contig1070.951.1|Name=mRNA_S-firma_F_contig1070.951.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=868bp
MAFVAPPSARCEVSPWLPNLPRWRSAAGGTRTPFANRVGVPTAVPRRTPT
ATAATSTTTAATAMTAPTLLTPEGDWPTPAKSSLGVIRRKAVADLDSKNF
VQKVQCTRPMDWRRVLQYLETAEQASGAQPSTGGMTVYMYAACISRMGKA
RRWEEALDILGRMRARGHRPNAYCMSAAIKACGSANRWKEALEVLEQRRK
DLGGKPADQQCISAAIYACGSSGQTEKALELLEETKADGTTPHPYSYTAA
IAACGNSMMGDKAAQLFEEMRQIRLLSGGFIDAFCVKVTVVALAKSGRLK
QALKIYVEMLAALPVKDGDKYALGLETLREASLACGRKGDWKASLRLLDE
MRAVAITPEGGCYETAMKCCVMNHEWRRATSLMDEMREVYGVQPGMGAYS
LAINAATSVSKYPQAVKMLATMRQNGLQPDPKIYSAVITACGKAGKWEES
LRMLNDMREVGVEPNSFNYWAAMTACAVAGQWQRAVGLLGEMKRGGLDLD
TPTYNTAVLACVQSARASEASALLGEMRATGVKPNAETYRLVMQACGKMG
MCEQVRVHLDEMVEQGLAPNSLVYASVISCYGREKRWEEALEFLAEMAET
AAFKPNIYHYNAALAACNGSAQGEAAAKLLRGMKEASGVTPDGESYLHAI
SACAYGGQAELALGLLKEVKEGAGGGSPGSNLYSLALRACARSRDGSHWA
RANGVVEEARGSGVALNVRAFNHAIKAAASAGQAGEVAARLAEMRAAGMR
PDLNSYAWALPALSHEERWGETLELVEELKAAGLMRGPFSHSVVLQAHAA
AGRWEEACVVLEDMLATGTFLSAKSSATIAESMAGRDGSEKALELLERAP
AAAAAAAAAAASAAVAP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR033443PPR_long
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat