prot_S-firma_F_contig10686.926.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10686.926.1
Unique Nameprot_S-firma_F_contig10686.926.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length172
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10686.926.1 vs. uniprot
Match: D8LHJ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHJ5_ECTSI)

HSP 1 Score: 248 bits (633), Expect = 7.770e-79
Identity = 114/147 (77.55%), Postives = 133/147 (90.48%), Query Frame = 0 
Query:    1 MAANVFLGGAPFQWEHVGIAYIYGFLYLAFDIVYYVFGSIFRY-DSKVIYFFLDWGGTPGRAVTITLFLLLVGLPLSHGVHVLMAAGRDRLRRMRPDWGWQGTDEEELERAMEVSGLRDAEVWAPLTGEGFDSEEEEMGGSSVLRDH 146
            MAANVF+GG+PF+WEH+GIAYIYGFLYL FDI+YY+FGS+F Y DS+VIYFFLDWGG PGR+VT++LFLL VGLPLSHG+HV +A GRD +RRMRP WGWQGTDEE+ ER ME+SGLRD +VWAPLTGEGFDSEEEEMGG+SV  D+
Sbjct:  194 MAANVFVGGSPFKWEHIGIAYIYGFLYLGFDILYYIFGSVFGYEDSRVIYFFLDWGGAPGRSVTVSLFLLSVGLPLSHGLHVAVAWGRDWVRRMRPGWGWQGTDEEDFERVMEMSGLRDTDVWAPLTGEGFDSEEEEMGGASVFHDY 340
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10686.926.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHJ5_ECTSI7.770e-7977.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12242UNCHARACTERIZEDcoord: 4..103
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 61..85
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 42..60
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..41
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 86..171
NoneNo IPR availableTMHMMTMhelixcoord: 61..83
NoneNo IPR availableTMHMMTMhelixcoord: 19..41
IPR039860Protein rolling stonePANTHERPTHR12242:SF1LD06593P-RELATEDcoord: 4..103

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10686contigS-firma_F_contig10686:1210..2446 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10686.926.1mRNA_S-firma_F_contig10686.926.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10686 121..4708 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10686.926.1 ID=prot_S-firma_F_contig10686.926.1|Name=mRNA_S-firma_F_contig10686.926.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=172bp
MAANVFLGGAPFQWEHVGIAYIYGFLYLAFDIVYYVFGSIFRYDSKVIYF
FLDWGGTPGRAVTITLFLLLVGLPLSHGVHVLMAAGRDRLRRMRPDWGWQ
GTDEEELERAMEVSGLRDAEVWAPLTGEGFDSEEEEMGGSSVLRDHGYVG
GSRSVSANGATKTGVSAAAVR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039860Rost