prot_S-firma_F_contig10516.724.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10516.724.1
Unique Nameprot_S-firma_F_contig10516.724.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length230
Homology
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BLAST of mRNA_S-firma_F_contig10516.724.1 vs. uniprot
Match: A0A6H5LEH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEH4_9PHAE)

HSP 1 Score: 263 bits (673), Expect = 4.580e-83
Identity = 139/231 (60.17%), Postives = 164/231 (71.00%), Query Frame = 0 
Query:    5 GGGRGGEGEGGVVWTGSAKGSLPLTGVTFQGESEEVFATVGCDPRAQLLVWDARADASRPALT-ALGSLDGSDAPYLCVASQPFTPQMFACGVSTGELLLWDVRARETVNKLQVGDSKGCTGGGTWGVAFHPRRPRHLFSCSGTGLLTKWLLPA-GQGXXXXXXXXXXXXXXXXXXXXXNWDG----RNLHALASRSALVGVCYDEAADCLSSVSKHGHVVVAQGVAGLRL 229
            GG  GG   GG+VWTG  KG++PL+GVTFQGESEEVFATVGC+PR QLLVWDAR D SRP +  ALG + GS+APYLCVASQPF P++FACGVSTGE+++WDVR    +++LQ  D     GG +WGV FHPR PRHLFSCSGTG+LTKW +P  GQ                       W+     R+L+ L SRS LVGVCYDE AD +++VSKHGHVVVA GVAGLRL
Sbjct:  233 GGSAGGGVGGGLVWTGRTKGAMPLSGVTFQGESEEVFATVGCNPRGQLLVWDARTDGSRPVVRGALGCIRGSEAPYLCVASQPFAPEVFACGVSTGEVIVWDVRTGVPLHELQAQDETSAAGG-SWGVTFHPRSPRHLFSCSGTGVLTKWYMPPEGQAHEPAAVDGGEWGGG-------GWESLRGARHLYELPSRSGLVGVCYDETADTIAAVSKHGHVVVAHGVAGLRL 455
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10516.724.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LEH4_9PHAE4.580e-8360.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 11..166
e-value: 6.2E-16
score: 60.7
IPR037628Nucleoporin Nup43PANTHERPTHR22652NUCLEOPORIN NUP43coord: 18..154
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 24..158

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10516contigS-firma_F_contig10516:1433..3327 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10516.724.1mRNA_S-firma_F_contig10516.724.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10516 713..4485 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10516.724.1 ID=prot_S-firma_F_contig10516.724.1|Name=mRNA_S-firma_F_contig10516.724.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=230bp
MTSRGGGRGGEGEGGVVWTGSAKGSLPLTGVTFQGESEEVFATVGCDPRA
QLLVWDARADASRPALTALGSLDGSDAPYLCVASQPFTPQMFACGVSTGE
LLLWDVRARETVNKLQVGDSKGCTGGGTWGVAFHPRRPRHLFSCSGTGLL
TKWLLPAGQGQAAAAAAPRFGFGGGGGGGGGNWDGRNLHALASRSALVGV
CYDEAADCLSSVSKHGHVVVAQGVAGLRL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR037628Nup43
IPR015943WD40/YVTN_repeat-like_dom_sf