prot_S-firma_F_contig10498.691.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10498.691.1
Unique Nameprot_S-firma_F_contig10498.691.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length324
Homology
BLAST of mRNA_S-firma_F_contig10498.691.1 vs. uniprot
Match: A0A6H5JAQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAQ4_9PHAE)

HSP 1 Score: 360 bits (923), Expect = 5.710e-121
Identity = 185/289 (64.01%), Postives = 226/289 (78.20%), Query Frame = 0
Query:   34 NCCVKPYSYFNCEGSGHMASPGKLYTCVDTSDLKGCMSCLRDEDYSDDTCSTCCAIEEDSECNNLESEWEFYASTLFFICLCCCFTALCGFTEIRRKKKGISFAEAWSVPQGMPILQTWPRRSVSASDVNQAAGEGQQQWAALADGEDDPKKYPVAGLVDDSGMAYGFVSSLPQSILTSVATSLGQSGPVAPPSPQEPELTVWIARDDVGALGTVESSRPQQDGGASGRSS---------------GSGAGRA-GGRQHRAVVIGNDLEEPLVVAGVT--PARGTPALG 304
            NCC+ P+SYF+C G+GH+ASPGKLYTC+D S++  CMSCLR+ DYSD +C TCC+IE + +C  ++SEW+FYASTLFFICLCCCFTALCG TE+RRKKKGISFA+AWSVPQ MPIL+TWPRRS S+SD++QA GE   QWAAL+D E+D K+YPVAGLVDDSGMA+GFV++LPQ++L+SVATSL Q+G  +PPSPQEPELTVWI+RD+ GA  +  + R    GG SG S+                SGA RA GGRQ RAVV+GNDLEEPL++ GV   P RG  A G
Sbjct:   28 NCCITPFSYFDCTGTGHLASPGKLYTCIDVSEVSSCMSCLRNADYSDVSCDTCCSIE-NLDCTKVDSEWDFYASTLFFICLCCCFTALCGLTEVRRKKKGISFAQAWSVPQAMPILRTWPRRSASSSDMSQAGGEVGTQWAALSDDEEDLKRYPVAGLVDDSGMAFGFVTTLPQTLLSSVATSLRQAGSPSPPSPQEPELTVWISRDNEGASASAPAHRGI--GGGSGASAVTGVEANSSEESSRGSSGATRAAGGRQQRAVVVGNDLEEPLMLDGVGTGPGRGGGAAG 313          
BLAST of mRNA_S-firma_F_contig10498.691.1 vs. uniprot
Match: A0A6H5L5L4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L4_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 5.000e-9
Identity = 47/144 (32.64%), Postives = 71/144 (49.31%), Query Frame = 0
Query:   34 NCCVKPYSYFNCEGSGHMASPGKLYTC--VDTSDLKGCMSCLRDEDYSDDTCSTCCAIEEDSECNNLESEWEFYASTLFFICLCCCFTALCGFTEIRRKKKGISFAEAWSVPQGMPILQTWPRRSVSASDVNQAAGEGQQQWAA 175
            NCC  P +   C  SG +   G+ Y C  V++   + C+SC+     S   C+ CC    ++EC+ LE  W    +TL    +    + +    E RRK+KGIS A AWS+PQGMP+L+       + +D++ A       W A
Sbjct:   66 NCCSGPDAEIECVESG-VDYLGERYYCMHVESPQTRACVSCIPSRSSST-KCAYCCGTP-NAECD-LEWSWGAVLATLSVSAVFATCSGILALAEKRRKRKGISLARAWSIPQGMPVLRA------TVTDLSDAVRGRASIWRA 199          
BLAST of mRNA_S-firma_F_contig10498.691.1 vs. uniprot
Match: D7FJE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJE0_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 2.130e-6
Identity = 37/115 (32.17%), Postives = 59/115 (51.30%), Query Frame = 0
Query:   61 VDTSDLKGCMSCLRDEDYSDDTCSTCCAIEEDSECNNLESEWEFYASTLFFICLCCCFTALCGFTEIRRKKKGISFAEAWSVPQGMPILQTWPRRSVSASDVNQAAGEGQQQWAA 175
            V++   + C+SC+     S   C+ CC    ++EC+ LE  W    +TL    +    + +    E RRK+KGIS A AWS+PQGMP+L+       + +D++ A       W+A
Sbjct:    3 VESPQTRACVSCIPSRSSST-KCAYCCGTP-NAECD-LEWSWGAVLATLSVSAVFATCSGILALAEKRRKRKGISLARAWSIPQGMPVLRA------TVTDLSDAVRGRASIWSA 108          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10498.691.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JAQ4_9PHAE5.710e-12164.01Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5L5L4_9PHAE5.000e-932.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJE0_ECTSI2.130e-632.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 125..323
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 104..124
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 31..103
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 13..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 25..30
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..30
score: 0.887
NoneNo IPR availableTMHMMTMhelixcoord: 102..124
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10498contigS-firma_F_contig10498:371..3452 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10498.691.1mRNA_S-firma_F_contig10498.691.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10498 171..4494 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10498.691.1 ID=prot_S-firma_F_contig10498.691.1|Name=mRNA_S-firma_F_contig10498.691.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=324bp
MKIVDKWSGGRMALAFVLAVLALASAPSAAEDINCCVKPYSYFNCEGSGH
MASPGKLYTCVDTSDLKGCMSCLRDEDYSDDTCSTCCAIEEDSECNNLES
EWEFYASTLFFICLCCCFTALCGFTEIRRKKKGISFAEAWSVPQGMPILQ
TWPRRSVSASDVNQAAGEGQQQWAALADGEDDPKKYPVAGLVDDSGMAYG
FVSSLPQSILTSVATSLGQSGPVAPPSPQEPELTVWIARDDVGALGTVES
SRPQQDGGASGRSSGSGAGRAGGRQHRAVVIGNDLEEPLVVAGVTPARGT
PALGRTRSTSSSSTPGPSGQISH*
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