prot_S-firma_F_contig10349.495.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10349.495.1
Unique Nameprot_S-firma_F_contig10349.495.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length620
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10349.495.1 vs. uniprot
Match: D8LI54_ECTSI (USP domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI54_ECTSI)

HSP 1 Score: 360 bits (924), Expect = 2.550e-105
Identity = 285/579 (49.22%), Postives = 314/579 (54.23%), Query Frame = 0 
Query:   26 CCLLKFPEVDAETGPVGSSAC-AATAPPSAECSPSLGPLXXXXXXXXXXXXXXXXXXXXXXVASALLLSLRSVGAAAAEEXXXXXXXXXXXXXXXXXXXXXXTPTPSGCGSRSAADGQHATTAVEQETAALGYSSSXXXXXXXXXXXXXXXXXXXLPGGALRLDAADAAPTPTVPPPGAAVGSEDATPTAHARVDRAATTAAXXXXALSAKAETEVLTSTYVEVVPPESRWGEQFTVAVYRNSCVGDIRRAVWAEMHRRGLGPKRSCPPVASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRVSGSIRHPLEAEAEEEAGWTPAALRLRERQVKLPATIIRDVSGVVTRLRSQLHGAPWLLAAQVLPGEEDLGRPPCAAGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------QWWNRWEWRLTEKYEAWVSPSETVANARRRLAEGAGVDPANLLANKCAPNARLRLFDLRG---ESDDVSGTSSSSSRTQQSGTWGSSFSSVNKCHWEDLDAARGDQPVGTAAISEGHLLLLQDASQPLKQLTAAAEASMIG 581
            C  LKFPEVDAE GPV  + C   TAPPSA+CSP+LGP+                      VAS LLL+LR VGAA                            TP+  G    A  +  TT  ++E  A     S                       A               P  AAVG+  A+P     V  AA    XXXX   AKAETE LTSTYVEVVPPESRWGEQF VAV+R+S VGDIRRAVW EM RRGLGP+      A+                                      S  HPLE       GWTP ALRLRER VKLPATI+RD  G VTRLRS+   APWLL AQVLP EEDLGRP    G G   XXXXXXXX          XXXXXXXXXX                    QWWNRWEWRLTEKYEAWVSP+ETVA+ARRRLAE AGV+PANLLAN+CAPNARLRLFDLRG   E  D SG S +  + Q SGTWG SFS  NKCHW DL+A+RGDQPVG +AISEG L+LLQD+SQPLKQL  A EAS+ G
Sbjct: 1402 CRSLKFPEVDAEIGPV--AICDTTTAPPSADCSPTLGPVGEGRGVVGEGDNRPTV------VASDLLLTLRGVGAATG---GGDSSGGSEAPTASVSSSETGQTTPTNRGIALLASEECKTTPTDREAVAPFAPPSPPRSSSAV---------------AXXXXXXXXXXXXXAHPGSAAVGT-GASP--EGGVAWAAAXXXXXXXXQDAKAETEALTSTYVEVVPPESRWGEQFNVAVHRDSTVGDIRRAVWTEMRRRGLGPRGFSAVGAAADVGNEEEKDDRLPTPGAV-------------------STGHPLEE------GWTPGALRLRERHVKLPATIVRDADGKVTRLRSRPRDAPWLLVAQVLPREEDLGRPVFPQGGGGGGXXXXXXXXGDSGHGSAETXXXXXXXXXXGGADAARDDCPPQDARVIVVQWWNRWEWRLTEKYEAWVSPTETVASARRRLAEQAGVNPANLLANRCAPNARLRLFDLRGTASERGDGSGGSPAPEK-QSSGTWGGSFSH-NKCHWSDLEASRGDQPVGGSAISEGSLVLLQDSSQPLKQLAPATEASIAG 1924
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10349.495.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LI54_ECTSI2.550e-10549.22USP domain-containing protein (Fragment) n=2 Tax=E... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10349contigS-firma_F_contig10349:2339..4516 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10349.495.1mRNA_S-firma_F_contig10349.495.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10349 2339..4516 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10349.495.1 ID=prot_S-firma_F_contig10349.495.1|Name=mRNA_S-firma_F_contig10349.495.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=620bp
VGRALKLTADGAAETAGASAAAAAGCCLLKFPEVDAETGPVGSSACAATA
PPSAECSPSLGPLGGRGGGCGGGSGGSDGDDGSAGVASALLLSLRSVGAA
AAEEEGSGGSEAPTASVSSSSEAEQTTPTPSGCGSRSAADGQHATTAVEQ
ETAALGYSSSAPASSPSSTTAAAAAAAAALPGGALRLDAADAAPTPTVPP
PGAAVGSEDATPTAHARVDRAATTAAAAAAALSAKAETEVLTSTYVEVVP
PESRWGEQFTVAVYRNSCVGDIRRAVWAEMHRRGLGPKRSCPPVASGGGG
GTKEKEDERRPPPPPSSPPAAGEEKEEEERRVSGSIRHPLEAEAEEEAGW
TPAALRLRERQVKLPATIIRDVSGVVTRLRSQLHGAPWLLAAQVLPGEED
LGRPPCAAGDGGDGAGGGGEAGAGGAAACLVPPPPQDAIVIVVQWWNRWE
WRLTEKYEAWVSPSETVANARRRLAEGAGVDPANLLANKCAPNARLRLFD
LRGESDDVSGTSSSSSRTQQSGTWGSSFSSVNKCHWEDLDAARGDQPVGT
AAISEGHLLLLQDASQPLKQLTAAAEASMIGGDGGGGCAAGGAATTAEAC
SLADVGSWYAGGASGSPKSP
back to top