prot_S-firma_F_contig1034.484.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig1034.484.1
Unique Nameprot_S-firma_F_contig1034.484.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length70
Homology
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BLAST of mRNA_S-firma_F_contig1034.484.1 vs. uniprot
Match: D7FSF3_ECTSI (PsbP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSF3_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 1.360e-32
Identity = 56/68 (82.35%), Postives = 64/68 (94.12%), Query Frame = 0 
Query:    1 MVNSYTSKNSYVYDYIVNQQGRPEKHIKTIWILFPDQGQLATITAQCNESDYPTVGKSIDALIASVTK 68
            M+ SYT KNSYVYDYIV+Q+GRPEKHIKT+W+LFP+QGQLATITAQCNESDY  VGK+ID+LIASVTK
Sbjct:  161 MLESYTYKNSYVYDYIVDQEGRPEKHIKTMWVLFPEQGQLATITAQCNESDYAKVGKTIDSLIASVTK 228
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BLAST of mRNA_S-firma_F_contig1034.484.1 vs. uniprot
Match: A0A835ZDA3_9STRA (PsbP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDA3_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 3.010e-10
Identity = 26/60 (43.33%), Postives = 40/60 (66.67%), Query Frame = 0 
Query:    1 MVNSYTSKNSYVYDYIVNQQGRPEKHIKTIWILFPDQGQLATITAQCNESDYPTVGKSID 60
            M+N  +  + Y YDYI+ Q+GRPEKH+K++W +      L T+TAQC+E++YP     +D
Sbjct:   95 MLNVKSKNSMYYYDYIIAQEGRPEKHLKSVWSVVSGDA-LVTLTAQCDEANYPAYASQMD 153
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BLAST of mRNA_S-firma_F_contig1034.484.1 vs. uniprot
Match: A0A6V1S113_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S113_HETAK)

HSP 1 Score: 58.5 bits (140), Expect = 1.330e-8
Identity = 28/64 (43.75%), Postives = 41/64 (64.06%), Query Frame = 0 
Query:    4 SYTSKNSYVYDYIVNQQGRPEKHIKTIWILFPDQGQ--LATITAQCNESDYPTVGKSIDALIAS 65
            S + + +Y YDY V Q+GRPEK +KTI+ + PD+    L T TAQC+ +DY   G  + A+ +S
Sbjct:  161 SRSQRGTYFYDYTVKQEGRPEKRLKTIFAVVPDEFSPVLVTFTAQCDVADYEEYGTLLSAIASS 224
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1034.484.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FSF3_ECTSI1.360e-3282.35PsbP domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835ZDA3_9STRA3.010e-1043.33PsbP domain-containing protein (Fragment) n=1 Tax=... [more]
A0A6V1S113_HETAK1.330e-843.75Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1034contigS-firma_F_contig1034:13273..13758 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1034.484.1mRNA_S-firma_F_contig1034.484.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig1034 12429..15813 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig1034.484.1 ID=prot_S-firma_F_contig1034.484.1|Name=mRNA_S-firma_F_contig1034.484.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=70bp
MVNSYTSKNSYVYDYIVNQQGRPEKHIKTIWILFPDQGQLATITAQCNES
DYPTVGKSIDALIASVTKT*
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