mRNA_S-firma_F_contig1113.1498.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1113.1498.1
Unique NamemRNA_S-firma_F_contig1113.1498.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig1113.1498.1 vs. uniprot
Match: D7FJK6_ECTSI (Ribonucleoside-triphosphate reductase (thioredoxin) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJK6_ECTSI)

HSP 1 Score: 1090 bits (2818), Expect = 0.000e+0
Identity = 529/615 (86.02%), Postives = 568/615 (92.36%), Query Frame = 2 
Query:  368 GDDAALDELVATRNMRVGGLGTSNHEEMESDKMATPRAMAFRLCSHFINSEGRASKPRFGFNGLGELVYQRTYARYLGEETNDKEQWYQTVERVVNGTFSMQKEWMLSRGMPWNEDEAQSTAQEMYRRMFAMKFLPPGRGLWAMGSKLTTERRLYAALNNCAFVSTQDLAKDPTAPFCFLMDASMLGVGVGFDTKGAGTINILAPGSAEGLKGPSGLKFVVDDSREGWRDALKVLLEAYFFGHAAPEFDVSQLRPAGAPIRGFGGVSQGSAPLMELMASIKATLDPLIGKPLSVTAIVDIMNKVGVCVVAGNVRRTAEIAFGDPGSEEYIDLKNYDKNPNRSAFGWASNNSVLAKLGMDYTKVCERIHRNGEPGFAWLENMRRYGRMGDEKNDRDIKAMGGNPCLEQTLESFEMCCLVETFPDKHKSLEDYLTTLRFAFMYAKTVTLGGTHWEQTNEILFRNRRIGCSMSGLAQFVAARGLGTLQEWCEEGYNAVAQIDEDLSAHFGIPTSIKTTSIKPSGTVSLLAGATPGMHYPESRFYIRRVRLSTDADVLGPLRDAGYRLEPAAENPEGTVVVEVPVDAGEGVRTARDLSMWEQLSFAAFLQRYWADNQAS 2212
            G D    +  A RN R+GGLGTSN  E +S   A      F+LCS F++ EGR SKP+FGFNGLGELVYQRTYARYLGE+T+D+EQWYQT+ERVVNGTFSMQKEWMLSRGM W+E EAQSTAQEMYRRMFA KFLPPGRGLWAMGSKLTTERRLYAALNNCAFVST+DLA DPTAPFCFLMDASMLGVGVGFDTKGAGTI+++APGSAEG +GPS L  VVDDSREGWRDA K+LLEAYFFGH  P  DVS LRPAGAPIRGFGGVSQGSAPL+ELMAS+KATLDPLIGKPLSVTAIVD+MNKVGVCVVAGNVRRTAEIAFGDPGS+EYIDLKNYDKNP+R++FGWASNNSVLA LGMDYTKVCERI +NGEPGFAWLENMR YGRMGDEKNDRD KAMGGNPCLEQTLESFEMCCLVETFPDKH+SLED+LTTLRFA +YAKTVTLGGTHW++TNEILFRNRRIGCSMSGLAQFVAARGLGTLQEWCEEGY AV++IDEDLS  FGIPTSIKTTSIKPSGTVSLLAGATPGMHYPESRFYIRRVR+++DADVLGPLR+AGYRLEPAAENPEGT+VVEVPVDAGEGVRTA+DLSMWEQLSFAAFLQRYWADNQ S
Sbjct:    5 GSDEPSHDTAAARNSRIGGLGTSNDAEAKSSNTA------FQLCSQFVDREGRGSKPQFGFNGLGELVYQRTYARYLGEDTDDREQWYQTIERVVNGTFSMQKEWMLSRGMRWDEQEAQSTAQEMYRRMFAFKFLPPGRGLWAMGSKLTTERRLYAALNNCAFVSTRDLASDPTAPFCFLMDASMLGVGVGFDTKGAGTIDVVAPGSAEGREGPSELNIVVDDSREGWRDAFKLLLEAYFFGHQVPVLDVSNLRPAGAPIRGFGGVSQGSAPLVELMASVKATLDPLIGKPLSVTAIVDLMNKVGVCVVAGNVRRTAEIAFGDPGSDEYIDLKNYDKNPDRASFGWASNNSVLAPLGMDYTKVCERIQQNGEPGFAWLENMRTYGRMGDEKNDRDSKAMGGNPCLEQTLESFEMCCLVETFPDKHESLEDFLTTLRFAMLYAKTVTLGGTHWDKTNEILFRNRRIGCSMSGLAQFVAARGLGTLQEWCEEGYEAVSRIDEDLSTQFGIPTSIKTTSIKPSGTVSLLAGATPGMHYPESRFYIRRVRMASDADVLGPLREAGYRLEPAAENPEGTMVVEVPVDAGEGVRTAQDLSMWEQLSFAAFLQRYWADNQVS 613
[Close]
BLAST of mRNA_S-firma_F_contig1113.1498.1 vs. uniprot
Match: A0A835YMD1_9STRA (Ribonucleoside-triphosphate reductase (thioredoxin) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMD1_9STRA)

HSP 1 Score: 831 bits (2147), Expect = 7.660e-289
Identity = 403/575 (70.09%), Postives = 476/575 (82.78%), Query Frame = 2 
Query:  533 KPRFGFNGLGELVYQRTYARYLGEETNDKEQWYQTVERVVNGTFSMQKEWMLSRGMPWNEDEAQSTAQEMYRRMFAMKFLPPGRGLWAMGSKLTTERRLYAALNNCAFVSTQDLAKDPTAPFCFLMDASMLGVGVGFDTKGAGTINILAPGSAEGLKGPSGLKFVVDDSREGWRDALKVLLEAYFFGHAAPEFDVSQLRPAGAPIRGFGGVSQGSAPLMELMASIKATLDPLIGKPLSVTAIVDIMNKVGVCVVAGNVRRTAEIAFGDPGSEEYIDLKNYDKNPNRSAFGWASNNSVLAKLGMDYTKVCERIHRNGEPGFAWLENMRRYGRMGDEKNDRDIKAMGGNPCLEQTLESFEMCCLVETFPDKHKSLEDYLTTLRFAFMYAKTVTLGGTHWEQTNEILFRNRRIGCSMSGLAQFVAARGLGTLQEWCEEGYNAVAQIDEDLSAHFGIPTSIKTTSIKPSGTVSLLAGATPGMHYPESRFYIRRVRLSTDADVLGPLRDAGYRLEPAAENPEGTVVVEVPVDAGEGVRTARDLSMWEQLSFAAFLQRYWADNQASMLRRIAVKLKSWSLP 2257
            +P FGFNGLGELVY+RTY+RY+ E+++ KE+WYQTV+RVVNGTFSMQKEW L+ G+PW+ED AQ+ AQ+MY R+F MKFLPPGRGLWAMGSKLTTERRL+AALNNCAFVST ++A+DPT PFCFLMDASMLGVGVGFDTKGAG + +  PGS    + PS    V+ DSREGW ++L+VLL AYF G   P FD S +RPAG+PIRGFGGVSQG APL+EL   +  TL+PL G+ L+VTAIVD+MNK+G CVVAGNVRRTAEIAFGDP S EYI+LK+YD NP+R+++GW SNNSV+A LGMDYT VC+R+  NGEPGFAWL+NMR Y RM D  + +D +A GGNPCLEQTLES+EMCCLVETFP++H+SLED+  TLR AF YAKTVTLG THW QTN I+ RNRRIGCSMSGLAQFVAARGLG L+ WCE GY AV   D  LS  FG+  SIKTTSIKPSGTVSLLAGATPGMHYPE+RFY+RRVR++ ++++L PLR AG  +EP A NP GTVVVE+PVDAGEGVRT+R+L++WEQLSFAAFLQRYWADNQ S       + ++  LP
Sbjct:   35 RPPFGFNGLGELVYRRTYSRYVNEDSDVKEEWYQTVQRVVNGTFSMQKEWTLTGGLPWSEDAAQAEAQDMYTRIFNMKFLPPGRGLWAMGSKLTTERRLFAALNNCAFVSTANMAEDPTGPFCFLMDASMLGVGVGFDTKGAGAVGVHKPGSKLQHQHPS--THVIADSREGWVESLRVLLNAYFTGAPLPTFDSSLVRPAGSPIRGFGGVSQGPAPLLELHRDVMETLEPLAGRDLTVTAIVDVMNKIGKCVVAGNVRRTAEIAFGDPDSAEYINLKDYDVNPHRASYGWTSNNSVMATLGMDYTDVCKRVAANGEPGFAWLDNMRAYSRMDDAPDHKDARARGGNPCLEQTLESYEMCCLVETFPNRHESLEDFEATLRCAFAYAKTVTLGVTHWPQTNVIMARNRRIGCSMSGLAQFVAARGLGALRAWCEHGYAAVQAADSALSTRFGVHRSIKTTSIKPSGTVSLLAGATPGMHYPEARFYVRRVRVAAESELLAPLRAAGLPVEPCAMNP-GTVVVEIPVDAGEGVRTSRELTLWEQLSFAAFLQRYWADNQVSCTVTFDPETEAAQLP 606
[Close]
BLAST of mRNA_S-firma_F_contig1113.1498.1 vs. uniprot
Match: A0A835ZHW0_9STRA (Ribonucleoside-triphosphate reductase (thioredoxin) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHW0_9STRA)

HSP 1 Score: 790 bits (2039), Expect = 6.010e-272
Identity = 388/595 (65.21%), Postives = 466/595 (78.32%), Query Frame = 2 
Query:  476 RAMAFRLCSHFINSEGRASKPRFGFNGLGELVYQRTYARYLGEETNDKEQWYQTVERVVNGTFSMQKEWMLSRGMPWNEDEAQSTAQEMYRRMFAMKFLPPGRGLWAMGSKLTTERRLYAALNNCAFVSTQDLAKDPTAPFCFLMDASMLGVGVGFDTKGAGTINILAPGSA-EGLKGPSGLKFVVDDSREGWRDALKVLLEAYFFGHAAPEFDVSQLRPAGAPIRGFGGVSQGSAPLMELMASIKATLDPLIGKPLSVTAIVDIMNKVGVCVVAGNVRRTAEIAFGDPGSEEYIDLKNYDKNPNRSAFGWASNNSVLAKLGMDYTKVCERIHRNGEPGFAWLENMRRYGRMGDEKNDRDIKAMGGNPCLEQTLESFEMCCLVETFPDKHKSLEDYLTTLRFAFMYAKTVTLGGTHWEQTNEILFRNRRIGCSMSGLAQFVAARGLGTLQEWCEEGYNAVAQIDEDLSAHFGIPTSIKTTSIKPSGTVSLLAGATPGMHYPESRFYIRRVRLSTDADVLGPLRDAGYRLEPAAENPEGTVVVEVPVDAGEGVRTARDLSMWEQLSFAAFLQRYWADNQASMLRRIAVKLKSWSLP 2257
            + +AF L   F+    +A+ P FGFNGLGE VY+RTY+RYL    + +E W+QTV+RVVNGTFSMQKEW+++    W+E  AQ  AQEMY R+F MKFLPPGRGLWAMG+ LTT+RRLYAALNNCAFVST D+  DPTAPFCFLMDA MLGVGVGFDTKGA T++++APGSA     GP+ +  V D SREGW ++L+++L A+F     P FD + +RPAGAPIRGFGGVSQG+APL+ L A +  TL PL+G+ L+VTAIVDIMNK+G CV+AGNVRRTAEIAFGDP  EEY++LK+YD NP+R++FGW SNNSV+  LGMDYT VC+R+  NGEPGFAWL+NMRR+GRMG+  +D+D  A GGNPCLEQTLES+EMCCLVETFP +H +LED+  TLR AF YAKTVTLG  HW +T   L RNRRIGCSMSGLAQF AARGL TL+ WC+ GY  +   D  LS+  G+P SIKTTSIKPSGTVSLLAGATPGMHYPE+RFY+RRVR++ D  +L  LR AG R+EP A +P  T VVE  VDAGEGVRTAR+L +WEQLSFAAFLQR+WADNQ S       + ++  LP
Sbjct:   31 KELAFALEPSFVAKWSKATPP-FGFNGLGEFVYRRTYSRYLHGGDDAREVWFQTVQRVVNGTFSMQKEWLITEHRCWDEAAAQRDAQEMYERIFNMKFLPPGRGLWAMGTALTTQRRLYAALNNCAFVSTADMQDDPTAPFCFLMDACMLGVGVGFDTKGARTVDVVAPGSACPEHTGPAAVHAVAD-SREGWVESLRIVLSAFFRSTPLPSFDFAGVRPAGAPIRGFGGVSQGAAPLITLHADVIETLRPLVGRSLTVTAIVDIMNKIGKCVIAGNVRRTAEIAFGDPDDEEYVNLKDYDANPHRASFGWTSNNSVMCPLGMDYTAVCKRVAANGEPGFAWLDNMRRFGRMGNPADDKDAAASGGNPCLEQTLESYEMCCLVETFPHRHDTLEDFEATLRCAFAYAKTVTLGAPHWPRTAAALLRNRRIGCSMSGLAQFAAARGLPTLRAWCDRGYATIQTTDAALSSRLGVPRSIKTTSIKPSGTVSLLAGATPGMHYPEARFYVRRVRVAADCALLPALRAAGLRVEPCALSPATTAVVEFAVDAGEGVRTARELPLWEQLSFAAFLQRHWADNQVSCTVTFDPETEAAQLP 623
[Close]
BLAST of mRNA_S-firma_F_contig1113.1498.1 vs. uniprot
Match: W7T512_9STRA (Ribonucleoside-triphosphate reductase (thioredoxin) n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T512_9STRA)

HSP 1 Score: 791 bits (2044), Expect = 5.920e-271
Identity = 379/576 (65.80%), Postives = 458/576 (79.51%), Query Frame = 2 
Query:  488 FRLCSHFINSEGRASKPRFGFNGLGELVYQRTYARYLGEETNDKEQWYQTVERVVNGTFSMQKEWMLSRGMPWNEDEAQSTAQEMYRRMFAMKFLPPGRGLWAMGSKLTTERRLYAALNNCAFVSTQDLAKDPTAPFCFLMDASMLGVGVGFDTKGAGTINILAPGSAEGLKGPSGLK-FVVDDSREGWRDALKVLLEAYFFGHAAPEFDVSQLRPAGAPIRGFGGVSQGSAPLMELMASIKATLDPLIGKPLSVTAIVDIMNKVGVCVVAGNVRRTAEIAFGDPGSEEYIDLKNYDKNPNRSAFGWASNNSVLAKLGMDYTKVCERIHRNGEPGFAWLENMRRYGRMGDEKNDRDIKAMGGNPCLEQTLESFEMCCLVETFPDKHKSLEDYLTTLRFAFMYAKTVTLGGTHWEQTNEILFRNRRIGCSMSGLAQFVAARGLGTLQEWCEEGYNAVAQIDEDLSAHFGIPTSIKTTSIKPSGTVSLLAGATPGMHYPESRFYIRRVRLSTDADVLGPLRDAGYRLEPAAENPEGTVVVEVPVDAGEGVRTARDLSMWEQLSFAAFLQRYWADNQAS 2212
            FRL   F+  +     P FGFNGLGELVY+RTY+R +  +   +E+W++TV RVVNGTFSMQKEW+L + + W+E+ AQ  AQEMYRR+F MKFLPPGRGLWAMG+ LT +RRLYAALNNC FVSTQD+A DP+APF FLMDASMLGVGVGFDT GAG + +  P      + P   K FV+ DSREGW +++K L++AYF     P FD S +RPAG+PI+GFGGVSQG   L  L   I+  LDP++G+P+SVTAIVD+MN +G CVVAGNVRRTAEIAFG P  EEY+DLKNY+KNP+R+A+GW SNNSV A +GMDY  VCER+ RNGEPGFAWLENMR YGRMG   + RD +AMGGNPCLEQTLESFE+CCLVETFPDKH SLED+L TL+FAF+YAKTVTLG THW +TN ++ RNRRIGCSMSGLAQFV  +G+G L  WCEEGY  + + D+  S    IP S+KTTSIKPSGTVSLLAGATPGMH+PESRFY+RRVRL+ ++++L PL + GY +EPAA +PE T VVE+PVD GEGVRT +++ +WEQ++FAAFLQR+WADNQ S
Sbjct:  208 FRLDPSFVQ-QWEDEDPPFGFNGLGELVYRRTYSR-MKADGEHRERWFETVGRVVNGTFSMQKEWLLRQSLEWDEERAQGLAQEMYRRIFEMKFLPPGRGLWAMGTTLTEDRRLYAALNNCGFVSTQDMANDPSAPFAFLMDASMLGVGVGFDTLGAGRVTVWGPN-----RRPEARKTFVIPDSREGWVESVKYLIDAYFLNLPLPAFDYSSIRPAGSPIKGFGGVSQGGEILEALHGDIQGVLDPIVGEPVSVTAIVDMMNLIGKCVVAGNVRRTAEIAFGAPEDEEYVDLKNYEKNPHRAAYGWTSNNSVFASVGMDYENVCERVQRNGEPGFAWLENMRAYGRMGSPPDWRDARAMGGNPCLEQTLESFELCCLVETFPDKHDSLEDFLATLQFAFLYAKTVTLGPTHWAKTNAVMLRNRRIGCSMSGLAQFVTRKGMGELHRWCEEGYQTLQEADQRYSEWLSIPRSVKTTSIKPSGTVSLLAGATPGMHFPESRFYLRRVRLAKNSELLPPLLEVGYVVEPAAGDPERTCVVEIPVDVGEGVRTLKEVGLWEQVAFAAFLQRHWADNQVS 776
[Close]
BLAST of mRNA_S-firma_F_contig1113.1498.1 vs. uniprot
Match: A0A067BT24_SAPPC (Ribonucleoside-triphosphate reductase (thioredoxin) n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BT24_SAPPC)

HSP 1 Score: 755 bits (1949), Expect = 1.040e-259
Identity = 375/584 (64.21%), Postives = 446/584 (76.37%), Query Frame = 2 
Query:  467 ATPRAMAFRLCSHFINSEGRASKPRFGFNGLGELVYQRTYARYLGEETNDKEQWYQTVERVVNGTFSMQKEWMLSRGMPWNEDEAQSTAQEMYRRMFAMKFLPPGRGLWAMGSKLTTERRLYAALNNCAFVSTQDLAKDPTA--PFCFLMDASMLGVGVGFDTKGAGTINILAPGSAEGLKGPSGLKFVVDDSREGWRDALKVLLEAYFFGHAAPEFDVSQLRPAGAPIRGFGGVSQGSAPLMELMASIKATLDPLIGKPLSVTAIVDIMNKVGVCVVAGNVRRTAEIAFGDPGSEEYIDLKNYDKNPNRSAFGWASNNSVLAKLGMDYTKVCERIHRNGEPGFAWLENMRRYGRMGDEKNDRDIKAMGGNPCLEQTLESFEMCCLVETFPDKHKSLEDYLTTLRFAFMYAKTVTLGGTHWEQTNEILFRNRRIGCSMSGLAQFVAARGLGTLQEWCEEGYNAVAQIDEDLSAHFGIPTSIKTTSIKPSGTVSLLAGATPGMHYPESRFYIRRVRLSTDADVLGPLRDAGYRLEPAAENPEGTVVVEVPVDAGEGVRTARDLSMWEQLSFAAFLQRYWADNQAS 2212
            ATP    FRL   F+ +  R   P FGFNGLGELVY RTY+R   + T  KEQWY+TV RVVNGT+SMQK W L R + W+E  A ++A EMY+R+F M+FLPPGRGLWAMGS +T ER L+AALNNCAFVST+D+A  P+   PFCFLMDA+MLGVGVGFDTKGAGTI +  P  A      S   FVV DSREGW  ++++LLE+YF    AP FD S +RPAGAPIRGFGGVS G A L  L   +++TLDPL+G  L+V AIVD+MN +GVCVV+GNVRRTAEIAFGDP   EYI LK+Y  +P+R+A+GW SNNSV A LGMDY  +C  I +NGEPGFAWL+NM+RYGRM D  ND+D++A GGNPCLEQTLES+E+CCLVETFP KH SL+D+  TLR+A++YAKTVTLG THW  TN ++ RNRRIGCSMSG+AQF++ RGL  LQ WC EGY A+   D+  S    IP SIKTTSIKPSGTVSLLAGATPGMHYPESRFY+RRVRL   + ++  L+ AGY +EPAAE P+ TVVV  P+D GE +RT  ++S WEQLS AAFLQRYWADNQ S
Sbjct:    8 ATPD-FKFRLSDKFV-ATFREVPPPFGFNGLGELVYMRTYSREKDDGT--KEQWYETVARVVNGTYSMQKRWFLERNLGWDEARAYASACEMYKRIFKMQFLPPGRGLWAMGSPITEERGLFAALNNCAFVSTEDMATRPSPADPFCFLMDAAMLGVGVGFDTKGAGTIRVHRPQPA------SSEPFVVPDSREGWVASVRLLLESYFLKRPAPAFDYSLIRPAGAPIRGFGGVSSGPASLQALHGYLQSTLDPLVGHALTVRAIVDVMNHIGVCVVSGNVRRTAEIAFGDPLDAEYIALKDYTAHPDRAAYGWTSNNSVFASLGMDYAPICHHIVQNGEPGFAWLDNMQRYGRMIDPPNDKDVRAKGGNPCLEQTLESYELCCLVETFPAKHASLDDFKKTLRYAYLYAKTVTLGQTHWPATNRVMLRNRRIGCSMSGVAQFLSHRGLHELQTWCNEGYEAIQAYDKQFSDALAIPRSIKTTSIKPSGTVSLLAGATPGMHYPESRFYVRRVRLDASSPLVPALQAAGYHVEPAAEAPKTTVVVSFPIDVGENIRTLSEVSAWEQLSLAAFLQRYWADNQVS 581
[Close]
BLAST of mRNA_S-firma_F_contig1113.1498.1 vs. uniprot
Match: A0A6H5KM58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM58_9PHAE)

HSP 1 Score: 752 bits (1941), Expect = 3.870e-259
Identity = 397/571 (69.53%), Postives = 429/571 (75.13%), Query Frame = 2 
Query:  740 MYRRMFAMKFLPPGRGLWAMGSKLTTERRLYAALNNCAFVSTQD----------LAKDPTAPFCFLMDASMLGVGVGFDTKGAGTINILAPGSAEGLK-----GPSGLKFVVDDSREGWRDALKVLLEAYFFGHAAPEFDVSQLRPAGAPIRGFGGVSQGSAPLMELMASIKATLDPLIGKPLSVTAIVDIMNKVGVCVVAGNVRRTAEIAFGDPGSEEYIDLKNYDKNPNRSAFGWASNNSVLAKLGMDYTKV------------------------------------CERIHRNGEPGFAWLENMRRYGRMGDEKNDRDIKAMGGNPCLEQTLESFEMCCLVETFPDKHKSLEDYLTTLRFAFMYAKTVTLGGTHWEQTNEILFRNRRIGCSMSGLAQFVAARGLGTLQEWCEEGYNAVAQIDEDLSAHFGIPTSIKTTSIKPSGTVSLLAGATPGMHYPESRFYIRRVRLSTDADVLGPLRDAGYRLEPAAENPEGTVVVEVPVDAGEGVRTARDLSMWEQLSFAAFLQRYWADNQASMLRRIAVKLKSWSLP*VFPGHVG--CFHR 2293
            MYRRMFA KFLPPGRGLWAMGSKLTTERRLYAALNNCAFVST+D          LA DPTAPFCFLMDASMLGVGVGFDTKGAGTI+++APGSAEG +     GPS LK VVDDSREGWRDA K+LLEAYFFGH  P  DVS LRP GAPIRGFGGVSQGSAPL+ELMAS+KATLDPLIGKPLSVTAIVD+MNKVGVCVVAGNVRRTAEIAFGDPGS+EYIDLKNYDKNP+R++FGWASNNSVLA LGMDYTKV                                    CERI +NGEPGFAWLENMR YGRMGDEKNDRD KAMGGNPCLEQTLESFEMCCLVETFPDKH+SLED+LTTLRFA +YAKTVTLGGTHW++TNEILFRNRRIGC + G    +  RG                    D+S                            GMHYPESRFYIRRVR+++DADVLGPLR+AGYRLEPAAENPEGT+VVEVPVDAGE VRTA+DLSMWEQLSFAAFLQRYWADNQAS L   A+ L++W    +F  H    C  R
Sbjct:    1 MYRRMFAFKFLPPGRGLWAMGSKLTTERRLYAALNNCAFVSTRDALRCRHTPADLASDPTAPFCFLMDASMLGVGVGFDTKGAGTIDVVAPGSAEGREVGAQAGPSELKIVVDDSREGWRDAFKLLLEAYFFGHQVPVLDVSNLRPVGAPIRGFGGVSQGSAPLVELMASVKATLDPLIGKPLSVTAIVDLMNKVGVCVVAGNVRRTAEIAFGDPGSDEYIDLKNYDKNPDRASFGWASNNSVLAPLGMDYTKVHNGTQLSRLFYSSFSISNGCNRGVARVLMDVSNAKVCERIQKNGEPGFAWLENMRAYGRMGDEKNDRDSKAMGGNPCLEQTLESFEMCCLVETFPDKHESLEDFLTTLRFAMLYAKTVTLGGTHWDKTNEILFRNRRIGCRLRGSP--LDHRG--------------------DMSR--------------------------TGMHYPESRFYIRRVRMASDADVLGPLREAGYRLEPAAENPEGTMVVEVPVDAGEAVRTAQDLSMWEQLSFAAFLQRYWADNQASFLCFGALTLRTW----IFTSHASTLCIQR 519
[Close]
BLAST of mRNA_S-firma_F_contig1113.1498.1 vs. uniprot
Match: A0A662XT11_9STRA (Ribonucleoside-triphosphate reductase (thioredoxin) n=4 Tax=Peronosporaceae TaxID=4777 RepID=A0A662XT11_9STRA)

HSP 1 Score: 752 bits (1941), Expect = 9.340e-258
Identity = 367/582 (63.06%), Postives = 443/582 (76.12%), Query Frame = 2 
Query:  473 PRAMAFRLCSHFINSEGRASKPRFGFNGLGELVYQRTYARYLGEETNDKEQWYQTVERVVNGTFSMQKEWMLSRGMPWNEDEAQSTAQEMYRRMFAMKFLPPGRGLWAMGSKLTTERRLYAALNNCAFVSTQDLAK--DPTAPFCFLMDASMLGVGVGFDTKGAGTINILAPGSAEGLKGPSGLKFVVDDSREGWRDALKVLLEAYFFGHAAPEFDVSQLRPAGAPIRGFGGVSQGSAPLMELMASIKATLDPLIGKPLSVTAIVDIMNKVGVCVVAGNVRRTAEIAFGDPGSEEYIDLKNYDKNPNRSAFGWASNNSVLAKLGMDYTKVCERIHRNGEPGFAWLENMRRYGRMGDEKNDRDIKAMGGNPCLEQTLESFEMCCLVETFPDKHKSLEDYLTTLRFAFMYAKTVTLGGTHWEQTNEILFRNRRIGCSMSGLAQFVAARGLGTLQEWCEEGYNAVAQIDEDLSAHFGIPTSIKTTSIKPSGTVSLLAGATPGMHYPESRFYIRRVRLSTDADVLGPLRDAGYRLEPAAENPEGTVVVEVPVDAGEGVRTARDLSMWEQLSFAAFLQRYWADNQAS 2212
            P    FRL S F+    + + P FGFNGLGELVY RTY+R   + T  KE+W++TVERVVNGTF+MQK+W+   G PWNE E   TA+EMY R+F MKF PPGRGLWAMGS +T ER LYAALNNCAFVST D+ +   P  PFCFLM+A+MLGVGVGFDTKGAG + +      +G        F V DSREGW D++K+LLEA+F     P+FD S +RPAG PI+GFGG+S G+  L  L  +I + L PL GKPL+   IVDIMN++GVCVV+GNVRRTAEIAFGD   EEY+DLKNY+KNP+R+A+GW SNNS+ A +GMDY  + ERI RNGEPGFAWL+NMR+YGRM   K+DRD  A GGNPCLEQTLES+EMCCLVETFP  H SLED+  TL++A+MYAKTVTLG T W +TN ++ RNRRIGCSMSG+AQF++ RGL   Q WC+ GY+ + ++D  +SA F IP SIKTTSIKPSGTVSLLAGATPGMHYPESRFYIRR+RL   +D+L  L+ AGY +EPA E PE T+VV +PVD G+GVRT  ++S WEQ++ A FLQRYWADNQ S
Sbjct:   58 PGYKQFRLDSRFVAGFAQITPP-FGFNGLGELVYMRTYSRVKADGT--KERWFETVERVVNGTFNMQKKWLQQLGQPWNEQEMTHTAEEMYTRIFYMKFTPPGRGLWAMGSPITEERGLYAALNNCAFVSTADILELDTPAEPFCFLMEAAMLGVGVGFDTKGAGKLLV------QGCDESQTTVFAVPDSREGWVDSVKMLLEAHFLHQPMPKFDYSLIRPAGVPIKGFGGISSGAGSLTALHDAIHSILTPLAGKPLTSRGIVDIMNQMGVCVVSGNVRRTAEIAFGDYADEEYVDLKNYEKNPDRAAYGWTSNNSIFADVGMDYKPIAERIVRNGEPGFAWLDNMRQYGRMNGIKDDRDRNACGGNPCLEQTLESYEMCCLVETFPYNHDSLEDFQETLKYAYMYAKTVTLGQTQWPRTNLVMQRNRRIGCSMSGIAQFISNRGLNEFQRWCDTGYDKIQEVDAQISARFAIPRSIKTTSIKPSGTVSLLAGATPGMHYPESRFYIRRMRLDKHSDLLPALQHAGYEIEPAYEAPESTLVVSIPVDIGKGVRTLSNVSAWEQMALACFLQRYWADNQVS 630
[Close]
BLAST of mRNA_S-firma_F_contig1113.1498.1 vs. uniprot
Match: A0A0G4J8Q7_PLABS (Ribonucleoside-triphosphate reductase (thioredoxin) n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J8Q7_PLABS)

HSP 1 Score: 749 bits (1935), Expect = 2.610e-257
Identity = 380/669 (56.80%), Postives = 475/669 (71.00%), Query Frame = 2 
Query:  479 AMAFRLCSHFINSEGRASKPRFGFNGLGELVYQRTYARYLGEETNDKEQWYQTVERVVNGTFSMQKEWMLSRGMPWNEDEAQSTAQEMYRRMFAMKFLPPGRGLWAMGSKLTTERRLYAALNNCAFVSTQDLAKDPTAPFCFLMDASMLGVGVGFDTKGAGTINILAPGSAEGLKGPSGLK-FVVDDSREGWRDALKVLLEAYFFGHAAPEFDVSQLRPAGAPIRGFGGVSQGSAPLMELMASIKATLDPLIGKPLSVTAIVDIMNKVGVCVVAGNVRRTAEIAFGDPGSEEYIDLKNYDKNPNRSAFGWASNNSVLAKLGMDYTKVCERIHRNGEPGFAWLENMRRYGRMGDEKNDRDIKAMGGNPCLEQTLESFEMCCLVETFPDKHKSLEDYLTTLRFAFMYAKTVTLGGTHWEQTNEILFRNRRIGCSMSGLAQFVAARGLGTLQEWCEEGYNAVAQIDEDLSAHFGIPTSIKTTSIKPSGTVSLLAGATPGMHYPESRFYIRRVRLSTDADVLGPLRDAGYRLEPAAENPEGTVVVEVPVDAGEGVRTARDLSMWEQLSFAAFLQRYWADNQASMLRRIAVKLKSWSLP*VFPGHVGCFHRSPRR*AGY*SLGNPPRSCGVLFSQTPPFG*GVELGWWRNKWGAMYDSVTTSHTEY*ARLLVTD 2482
            A  F L + F+N     + P FGFNGLGELVY+RTY+R   + T D E+W++TVERVVNGTFSMQK W+   G+ W+ D AQ +AQ+MY R++++KF+PPGRGLWAMGS LT ER L+AALNNCAFVST+DL +DP  PF FLMDASMLGVGVGFDTKG G I +      +G+   + ++ + V DSREGW DA++V+L++ F       +DVSQ+RPAGAPIRGFGG + G  PL+ L+ SI+ATL  L G+P++VTAI D+MN +G CVV+GNVRRTAEIAFGDP  +EY+DLK+Y+KNP+R   GW SNNSV A++GMDY +VC R+ RNGEPGFAWL+NMR YGRM D  NDRD +A GGNPCLEQTLESFE+CCLVETFP +H SL+D+L TL+ A +YAKTVTLG T W ++N ++ RNRRIGCSMSG+AQF+  RGL  L +WC+ GY AV   DE +S    +P SIK+T IKPSGTVSLLAGATPGMHYPESRFYIRRVRL++ +D+L P+R AGY +EP A  P+ T VVE+PVD G G+RT RD+S+WEQL  AAFLQ YWADNQ S       + +        P           R  G   L   PR+    ++Q P     ++ G +R +  A+    T   T    R  V D
Sbjct:   31 AAPFALDAGFVNQYADRAAP-FGFNGLGELVYRRTYSR--AKPTGDNEEWFETVERVVNGTFSMQKRWIDQSGLLWDADRAQRSAQDMYDRIWSLKFVPPGRGLWAMGSPLTEERGLFAALNNCAFVSTRDLDRDPIRPFTFLMDASMLGVGVGFDTKGVGKIVV------KGIDYSAPVQHYSVADSREGWVDAVRVMLQSCFSAGPPIRYDVSQVRPAGAPIRGFGGTASGPGPLLSLLESIEATLRALTGRPITVTAITDLMNLIGKCVVSGNVRRTAEIAFGDPDLDEYLDLKDYEKNPSREGHGWTSNNSVFARVGMDYERVCSRVARNGEPGFAWLDNMRAYGRMSDPANDRDRRAEGGNPCLEQTLESFELCCLVETFPARHASLDDFLRTLKAALLYAKTVTLGATRWPESNRVMLRNRRIGCSMSGIAQFITQRGLHALHDWCQAGYAAVQLCDERVSEWLAVPRSIKSTCIKPSGTVSLLAGATPGMHYPESRFYIRRVRLASTSDLLEPVRRAGYPVEPCATTPD-TAVVEIPVDVGAGIRTLRDVSLWEQLELAAFLQAYWADNQVSATVSFDAEREG-------PHLAPALQYFQYRLKGVSFLPRAPRASAPAYAQMPYEE--IDEGEYRRRLAAIQPGFTLRRTNRHRRDFVAD 680
[Close]
BLAST of mRNA_S-firma_F_contig1113.1498.1 vs. uniprot
Match: A0A8J5M3B0_9STRA (Ribonucleoside-triphosphate reductase (thioredoxin) n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5M3B0_9STRA)

HSP 1 Score: 748 bits (1932), Expect = 9.810e-257
Identity = 368/582 (63.23%), Postives = 443/582 (76.12%), Query Frame = 2 
Query:  473 PRAMAFRLCSHFINSEGRASKPRFGFNGLGELVYQRTYARYLGEETNDKEQWYQTVERVVNGTFSMQKEWMLSRGMPWNEDEAQSTAQEMYRRMFAMKFLPPGRGLWAMGSKLTTERRLYAALNNCAFVSTQDLA--KDPTAPFCFLMDASMLGVGVGFDTKGAGTINILAPGSAEGLKGPSGLKFVVDDSREGWRDALKVLLEAYFFGHAAPEFDVSQLRPAGAPIRGFGGVSQGSAPLMELMASIKATLDPLIGKPLSVTAIVDIMNKVGVCVVAGNVRRTAEIAFGDPGSEEYIDLKNYDKNPNRSAFGWASNNSVLAKLGMDYTKVCERIHRNGEPGFAWLENMRRYGRMGDEKNDRDIKAMGGNPCLEQTLESFEMCCLVETFPDKHKSLEDYLTTLRFAFMYAKTVTLGGTHWEQTNEILFRNRRIGCSMSGLAQFVAARGLGTLQEWCEEGYNAVAQIDEDLSAHFGIPTSIKTTSIKPSGTVSLLAGATPGMHYPESRFYIRRVRLSTDADVLGPLRDAGYRLEPAAENPEGTVVVEVPVDAGEGVRTARDLSMWEQLSFAAFLQRYWADNQAS 2212
            P    F L   F+ S    + P FGFNGLGELVY RTY+R   + T  KE+W++T+ERV+NGTF+MQK+W    G PWNE+E    +QEMY R+F MKF PPGRGLWAMGS +T +R LYAALNNCAFVST D+   K P+ PFCFLM+A+MLGVGVGFDTKGAG + +      +G        +V+ DSREGW +++K+LLEA+F    A +FD SQ+R AG PI+GFGG+S G+  L  L  +I++ L PL GKPL+   IVDIMN++GVCVV+GNVRRTAEIAFGD   EEYIDLKNY+KNP+R+AFGW SNNS+ A +GMDY  + ERI RNGEPGFAWLENMR +GRM   K+D D  A GGNPCLEQTLES+EMCCLVETFP  H SLED+L TL+FA+MYAKTVTLG T W +TNE++ RNRRIGCSMSG+AQF++ RGL   Q WCE GY+ V ++D+ LSA F IP SIKTTSIKPSGTVSLLAGATPGMHYPESRFYIRR+RL   +D+L  L+ A Y +EPA E+P  T+VV +PVD GEGVRT  D+S WEQ + AAFLQR+WADNQ S
Sbjct:   36 PDYKPFTLDKAFVASFENQTPP-FGFNGLGELVYMRTYSRVKADGT--KERWFETIERVINGTFNMQKKWSQQLGQPWNEEEINHISQEMYTRVFQMKFTPPGRGLWAMGSPITEDRGLYAALNNCAFVSTADILELKTPSEPFCFLMEAAMLGVGVGFDTKGAGKLLV------QGCDETKTNVYVIPDSREGWVESVKMLLEAHFLHQPALKFDYSQIRAAGEPIKGFGGISSGAGSLTALHVAIESILKPLAGKPLTARGIVDIMNQMGVCVVSGNVRRTAEIAFGDYNDEEYIDLKNYEKNPDRAAFGWTSNNSIFADIGMDYKPIAERIVRNGEPGFAWLENMRNFGRMNGIKDDCDRNASGGNPCLEQTLESYEMCCLVETFPYNHDSLEDFLETLKFAYMYAKTVTLGQTRWPRTNEVMRRNRRIGCSMSGIAQFISNRGLNDFQRWCEAGYDRVQEVDKQLSARFAIPRSIKTTSIKPSGTVSLLAGATPGMHYPESRFYIRRMRLDNHSDLLPALQRAEYAIEPAHESPNTTLVVSIPVDVGEGVRTLSDVSAWEQFALAAFLQRHWADNQVS 608
[Close]
BLAST of mRNA_S-firma_F_contig1113.1498.1 vs. uniprot
Match: A0A7S4IGV8_9EUKA (Ribonucleoside-triphosphate reductase (thioredoxin) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IGV8_9EUKA)

HSP 1 Score: 741 bits (1912), Expect = 1.040e-253
Identity = 362/575 (62.96%), Postives = 449/575 (78.09%), Query Frame = 2 
Query:  488 FRLCSHFINSEGRASKPRFGFNGLGELVYQRTYARYLGEETNDKEQWYQTVERVVNGTFSMQKEWMLSRGMPWNEDEAQSTAQEMYRRMFAMKFLPPGRGLWAMGSKLTTERRLYAALNNCAFVSTQDLAKDPTAPFCFLMDASMLGVGVGFDTKGAGTINILAPGSAEGLKGPSGLKFVVDDSREGWRDALKVLLEAYFFGHAAPEFDVSQLRPAGAPIRGFGGVSQGSAPLMELMASIKATLDPLIGKPLSVTAIVDIMNKVGVCVVAGNVRRTAEIAFGDPGSEEYIDLKNYDKNPNRSAFGWASNNSVLAKLGMDYTKVCERIHRNGEPGFAWLENMRRYGRMGDEKNDRDIKAMGGNPCLEQTLESFEMCCLVETFPDKHKSLEDYLTTLRFAFMYAKTVTLGGTHWEQTNEILFRNRRIGCSMSGLAQFVAARGLGTLQEWCEEGYNAVAQIDEDLSAHFGIPTSIKTTSIKPSGTVSLLAGATPGMHYPESRFYIRRVRLSTDADVLGPLRDAGYRLEPAAENPEGTVVVEVPVDAGEGVRTARDLSMWEQLSFAAFLQRYWADNQAS 2212
            F L   FI    R  KP FGFNGLGE+VY+RTY+R   + TN  EQWY+TV RVVNGTF+MQK WM S  +PW++++ ++ A++MY R+F MKFLPPGRGLWAMGS LT E+ LYAALNNCAFVST+++A  P+ PF FLMDASMLGVGVGFDT GAG++++    + E    PS   F + DSREGW D+LK LL +YF+G+   EFD S +R AG PIRGFGGVS G   L +L   ++  L+   G  L+VT+IVDIMN +G CVVAGN+RRTAEIAFGD   EEYI+LKNY+KNP R ++GW SNNSV AK+GMDYT+VCE    NGEPGFAWLENMR+Y RM     + D +A GGNPCLEQTLESFEMCCLVETFP++H++LEDY+ +LR AF+YAKTVTLG THW +TN+++ RNRRIG SMSG+AQF+A+RG  TL+EWCE GY+A+ + D + S  F +PTSIKTTSIKPSGTVSLLAGATPG+HYP SR+Y+RRVRL+ D++++ PLR AGY LEPA  + + T+VV  PVDAG+G+R  +++SMWEQL+ AAFLQR+WADNQ S
Sbjct:   49 FALSKSFIRKY-RNQKPSFGFNGLGEMVYKRTYSRLKKDGTN--EQWYETVARVVNGTFNMQKRWMESHQLPWDQNKHKALAEDMYERIFQMKFLPPGRGLWAMGSALTEEKHLYAALNNCAFVSTENIADHPSKPFTFLMDASMLGVGVGFDTVGAGSVDVKGVSAGE----PS--FFQIPDSREGWVDSLKHLLNSYFYGYRPVEFDYSLIRLAGEPIRGFGGVSSGPGCLKDLHKDVRQVLEKNSGSALTVTSIVDIMNLIGRCVVAGNLRRTAEIAFGDAEDEEYINLKNYEKNPQRMSYGWTSNNSVFAKVGMDYTRVCELASTNGEPGFAWLENMRKYDRMNGVVTNTDHRAKGGNPCLEQTLESFEMCCLVETFPNQHETLEDYIASLRCAFLYAKTVTLGRTHWPETNQVMLRNRRIGTSMSGIAQFIASRGQETLREWCESGYDALQEFDTEFSDLFTVPTSIKTTSIKPSGTVSLLAGATPGVHYPISRYYLRRVRLAIDSELVEPLRQAGYPLEPAFGSEKTTLVVSFPVDAGKGLRKVKEVSMWEQLALAAFLQRHWADNQVS 614
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1113.1498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJK6_ECTSI0.000e+086.02Ribonucleoside-triphosphate reductase (thioredoxin... [more]
A0A835YMD1_9STRA7.660e-28970.09Ribonucleoside-triphosphate reductase (thioredoxin... [more]
A0A835ZHW0_9STRA6.010e-27265.21Ribonucleoside-triphosphate reductase (thioredoxin... [more]
W7T512_9STRA5.920e-27165.80Ribonucleoside-triphosphate reductase (thioredoxin... [more]
A0A067BT24_SAPPC1.040e-25964.21Ribonucleoside-triphosphate reductase (thioredoxin... [more]
A0A6H5KM58_9PHAE3.870e-25969.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A662XT11_9STRA9.340e-25863.06Ribonucleoside-triphosphate reductase (thioredoxin... [more]
A0A0G4J8Q7_PLABS2.610e-25756.80Ribonucleoside-triphosphate reductase (thioredoxin... [more]
A0A8J5M3B0_9STRA9.810e-25763.23Ribonucleoside-triphosphate reductase (thioredoxin... [more]
A0A7S4IGV8_9EUKA1.040e-25362.96Ribonucleoside-triphosphate reductase (thioredoxin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1113contigS-firma_F_contig1113:10582..23564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FJK6
PFAMsRibonuc_red_lgC
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0003824,GO:0004748,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009141,GO:0009142,GO:0009987,GO:0016491,GO:0016725,GO:0016728,GO:0018130,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0055086,GO:0055114,GO:0061731,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901576
Evalue0.0
EggNOG OGsCOG1372@1|root,2QRRC@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-04_006460.1
Descriptionreductase
COG categoryL
Hectar predicted targeting categorymitochondrion
Exons14
Model size3260
Cds size2208
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1113.1498.1prot_S-firma_F_contig1113.1498.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1113 10634..22564 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815662.8477428-UTR-S-firma_F_contig1113:10581..106331622815662.8477428-UTR-S-firma_F_contig1113:10581..10633Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1113 10582..10633 +
1696949487.058209-UTR-S-firma_F_contig1113:10581..106331696949487.058209-UTR-S-firma_F_contig1113:10581..10633Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1113 10582..10633 +
1622815663.021403-UTR-S-firma_F_contig1113:22564..235641622815663.021403-UTR-S-firma_F_contig1113:22564..23564Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1113 22565..23564 +
1696949487.2116706-UTR-S-firma_F_contig1113:22564..235641696949487.2116706-UTR-S-firma_F_contig1113:22564..23564Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1113 22565..23564 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815662.8592286-CDS-S-firma_F_contig1113:10633..109321622815662.8592286-CDS-S-firma_F_contig1113:10633..10932Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1113 10634..10932 +
1696949487.0693665-CDS-S-firma_F_contig1113:10633..109321696949487.0693665-CDS-S-firma_F_contig1113:10633..10932Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1113 10634..10932 +
1622815662.8704724-CDS-S-firma_F_contig1113:12362..126381622815662.8704724-CDS-S-firma_F_contig1113:12362..12638Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1113 12363..12638 +
1696949487.0777915-CDS-S-firma_F_contig1113:12362..126381696949487.0777915-CDS-S-firma_F_contig1113:12362..12638Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1113 12363..12638 +
1622815662.8799865-CDS-S-firma_F_contig1113:13383..134741622815662.8799865-CDS-S-firma_F_contig1113:13383..13474Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1113 13384..13474 +
1696949487.0885158-CDS-S-firma_F_contig1113:13383..134741696949487.0885158-CDS-S-firma_F_contig1113:13383..13474Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1113 13384..13474 +
1622815662.8893063-CDS-S-firma_F_contig1113:13967..141181622815662.8893063-CDS-S-firma_F_contig1113:13967..14118Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1113 13968..14118 +
1696949487.097371-CDS-S-firma_F_contig1113:13967..141181696949487.097371-CDS-S-firma_F_contig1113:13967..14118Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1113 13968..14118 +
1622815662.900429-CDS-S-firma_F_contig1113:14434..145681622815662.900429-CDS-S-firma_F_contig1113:14434..14568Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1113 14435..14568 +
1696949487.1059408-CDS-S-firma_F_contig1113:14434..145681696949487.1059408-CDS-S-firma_F_contig1113:14434..14568Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1113 14435..14568 +
1622815662.9109516-CDS-S-firma_F_contig1113:14778..149031622815662.9109516-CDS-S-firma_F_contig1113:14778..14903Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1113 14779..14903 +
1696949487.1145005-CDS-S-firma_F_contig1113:14778..149031696949487.1145005-CDS-S-firma_F_contig1113:14778..14903Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1113 14779..14903 +
1622815662.9254994-CDS-S-firma_F_contig1113:15239..153871622815662.9254994-CDS-S-firma_F_contig1113:15239..15387Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1113 15240..15387 +
1696949487.1229775-CDS-S-firma_F_contig1113:15239..153871696949487.1229775-CDS-S-firma_F_contig1113:15239..15387Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1113 15240..15387 +
1622815662.9369829-CDS-S-firma_F_contig1113:20036..202131622815662.9369829-CDS-S-firma_F_contig1113:20036..20213Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1113 20037..20213 +
1696949487.1310616-CDS-S-firma_F_contig1113:20036..202131696949487.1310616-CDS-S-firma_F_contig1113:20036..20213Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1113 20037..20213 +
1622815662.9501913-CDS-S-firma_F_contig1113:20367..205881622815662.9501913-CDS-S-firma_F_contig1113:20367..20588Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1113 20368..20588 +
1696949487.1395767-CDS-S-firma_F_contig1113:20367..205881696949487.1395767-CDS-S-firma_F_contig1113:20367..20588Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1113 20368..20588 +
1622815662.9617143-CDS-S-firma_F_contig1113:20855..209511622815662.9617143-CDS-S-firma_F_contig1113:20855..20951Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1113 20856..20951 +
1696949487.1502755-CDS-S-firma_F_contig1113:20855..209511696949487.1502755-CDS-S-firma_F_contig1113:20855..20951Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1113 20856..20951 +
1622815662.9720893-CDS-S-firma_F_contig1113:21163..212701622815662.9720893-CDS-S-firma_F_contig1113:21163..21270Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1113 21164..21270 +
1696949487.1599123-CDS-S-firma_F_contig1113:21163..212701696949487.1599123-CDS-S-firma_F_contig1113:21163..21270Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1113 21164..21270 +
1622815662.988626-CDS-S-firma_F_contig1113:21753..218371622815662.988626-CDS-S-firma_F_contig1113:21753..21837Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1113 21754..21837 +
1696949487.1702826-CDS-S-firma_F_contig1113:21753..218371696949487.1702826-CDS-S-firma_F_contig1113:21753..21837Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1113 21754..21837 +
1622815663.0022378-CDS-S-firma_F_contig1113:22108..222021622815663.0022378-CDS-S-firma_F_contig1113:22108..22202Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1113 22109..22202 +
1696949487.185834-CDS-S-firma_F_contig1113:22108..222021696949487.185834-CDS-S-firma_F_contig1113:22108..22202Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1113 22109..22202 +
1622815663.01158-CDS-S-firma_F_contig1113:22359..225641622815663.01158-CDS-S-firma_F_contig1113:22359..22564Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1113 22360..22564 +
1696949487.197412-CDS-S-firma_F_contig1113:22359..225641696949487.197412-CDS-S-firma_F_contig1113:22359..22564Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1113 22360..22564 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1113.1498.1

>prot_S-firma_F_contig1113.1498.1 ID=prot_S-firma_F_contig1113.1498.1|Name=mRNA_S-firma_F_contig1113.1498.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=736bp
MLSSTCFSQVHHSPRAFVQAVRLVRRKSVLCGGEHQTTAVTPRSCRSGSI
TWREVIDHRREGRCLWTSTTRTHRFGVAEHRCLSQDSRQVEQQSSSPLQS
PILRVGDDAALDELVATRNMRVGGLGTSNHEEMESDKMATPRAMAFRLCS
HFINSEGRASKPRFGFNGLGELVYQRTYARYLGEETNDKEQWYQTVERVV
NGTFSMQKEWMLSRGMPWNEDEAQSTAQEMYRRMFAMKFLPPGRGLWAMG
SKLTTERRLYAALNNCAFVSTQDLAKDPTAPFCFLMDASMLGVGVGFDTK
GAGTINILAPGSAEGLKGPSGLKFVVDDSREGWRDALKVLLEAYFFGHAA
PEFDVSQLRPAGAPIRGFGGVSQGSAPLMELMASIKATLDPLIGKPLSVT
AIVDIMNKVGVCVVAGNVRRTAEIAFGDPGSEEYIDLKNYDKNPNRSAFG
WASNNSVLAKLGMDYTKVCERIHRNGEPGFAWLENMRRYGRMGDEKNDRD
IKAMGGNPCLEQTLESFEMCCLVETFPDKHKSLEDYLTTLRFAFMYAKTV
TLGGTHWEQTNEILFRNRRIGCSMSGLAQFVAARGLGTLQEWCEEGYNAV
AQIDEDLSAHFGIPTSIKTTSIKPSGTVSLLAGATPGMHYPESRFYIRRV
RLSTDADVLGPLRDAGYRLEPAAENPEGTVVVEVPVDAGEGVRTARDLSM
WEQLSFAAFLQRYWADNQASMLRRIAVKLKSWSLP*
back to top

mRNA from alignment at S-firma_F_contig1113:10582..23564+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1113.1498.1 ID=mRNA_S-firma_F_contig1113.1498.1|Name=mRNA_S-firma_F_contig1113.1498.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=12983bp|location=Sequence derived from alignment at S-firma_F_contig1113:10582..23564+ (Sphaerotrichia firma ET2_F female)
GCCAACAGCTCACGCCTCACGCCGCGACACGTTTGCCTCTCTCTCTGGCG
AAATGCTGTCTTCTACTTGCTTCAGCCAAGTACACCATTCGCCCCGTGCC
TTCGTGCAGGCTGTGAGATTGGTTCGTCGGAAATCTGTCCTCTGTGGTGG
AGAACATCAGACAACAGCAGTCACCCCCCGGTCCTGCCGCAGCGGGAGCA
TCACATGGAGAGAAGTGATCGATCACCGCAGAGAGGGTCGCTGTTTGTGG
ACCTCGACCACCAGGACCCATCGTTTCGGCGTTGCCGAGCACCGCTGTCT
TTCGCAAGACTCCCGTCAAGTGGAACAACAATCTTCCTCTCCGCTCCAAA
GGTGGAGATACTGCCGGTGCAGTGCTGTGACTGCTTCCCCGAATGCAGTA
CACCCAGACACTTTTTGTACTCGTTCACCCACCCAACACTCGACGAAAAA
ACCATGTTAACCTGCGAAAAACAATTCCACGCACACCCCAAGTGGCACCC
CGCGATTTTTCTCTCAATTCATTAATAATGGTGGTTGTGGGTTCGCCACT
TAGATCTAGACTGCTGTCGTCCCTCTGGATACTTCACTTTGCAGTGTATT
CAGAGGCTTCAGAGGCTACACGTTGCAGCATATTTTTATATTTTTTCTGT
CCATCTGAACCAACCGGGGTCACACAGAAGGAGCGACCAGTGGGGCTTTT
TTCTTCTCTTTATATTTCCTTAGTGCCCCACCTTCCTCCTGCGGTGCTTG
CCTTCATTTTTATCGCAAGAAAGGTTCAGCCGTCCCTTGTCGACAGTGAA
GTCGAATTTTGTTTACTCACGAAGCTTTTCAGCTTTTTGCCGCTTTCCAC
TACCACAGAAGAAAGTGAGAAAAAAAACGCTCTCGCCGAGATCCGAACCC
GTGACCTGGTTGCTAGAAGGTTGCGTGGATATGTACGAACTAGACACCAC
TGCGGCGGTTAGTAATAAGTGAAGAGAGTCTAGCCCGTGTGTTGCGCAGC
ACGTGTTTTGACATTCCCCCCCAAGTTCCAGCCGACAACGTTATGACGGC
AGTCCTATCAACGCTCGGTGTGCTCTTGATGCTGATCCCCGAACGCATCG
CCGTTGCGCAAGGATAGAGACAGTCCGCGTACACAGCGAACCTCAACCCC
ATGACGTGCGGTCACTATACTGCGCTGGTTTGCCGTGGAGGTACTCTGTA
GCTCGTCGCTCGTCGCTTGTTTGTCTTCGCTGATGATGTTAATGAAAAAA
TGCCACCGAACTGCACCTGTCTACTTGTGCTAAATAGAGCTTGTCTACGT
ACACCAGCAGTGTGCCCCTCCCCGAAACCGTCTACTCCTCCCATCAAGTT
GCTCCTATCACGCAGCCCATGGAGAACTGCCATATTTTGCACAAGGTGCT
TCGAAGGAAGCCCGGATAACCGTAGATGCGCACAGAATGTAGAGCGCGTA
GGACGCTCTTTCAGCAGGTTTAATTAACAGCGTATATCTCGTAGTCTCAC
TTTTTCATGTACGATATCACCACAAACCCTTTGAATTTCCCAGCACGCAC
ACCCTGCATAGGTGGCAACACCTGCCATATGATTTGAGCGTTAAAAAAAT
GCTGCAAAATGCAATGGAAGTGCTAGTTGTGTGTTCTCTGGTATCTTCCA
TGTACGGTCGTTGGGCATTGGGATTTGCCAAGGTTCTCTCTGACTTTCTG
ATCATGCGGACACATCTCTGCCTCTCTCTTCTCCCTCCGCCTCTGCCTTG
TATGTTTCGCCAAACACGACGGACTCAGCAGCCCGATATTGCGTGTTGGC
GATGATGCTGCACTTGACGAGCTGGTAGCGACCCGAAATATGCGAGTAGG
CGGGCTAGGCACATCGAATCACGAAGAAATGGAGTCGGACAAGATGGCCA
CACCGCGAGCGATGGCTTTTCGACTGTGCTCGCATTTCATCAACTCAGAA
GGGCGTGCCAGCAAGCCTCGATTCGGGTTCAACGGTCTAGGAGAGCTCGT
ATACCAGCGTACGTACGCACGGTATCTGGGGGAAGAGACGAACGACAAAG
AGCAATGGTGAGGGTAGATAACCATGGCGTCGCTTTACTGAAAAGGAGCC
ACTTTGATCAGGTAGGGAAGGGGTTGGATACAGGTTTGGTAGATGGCATT
ACACGCCTGATGCGTCATGACGGCCCCGAGTTGGAAAGAAACCAGCTGTT
CGACGACTTTGACACCCCTGATCAATGTTCGCAGGAGAGGGTCCACCCCC
CCCTTCCTGTGTGCCGGGATCGTGTAGCTAGTCGTAGTGGAGGATGGAGG
CCAGTGGGGCAGAAGACGAATATGCCAATAAATGGGAAAAGAAAGAGAAA
AATGTTCCTTGTCTATTTGGTGCAGCATCTCCATTCGAGAAACTATCCCG
TTGCGTTGCCCAACACGAATGGGACTTACTTGACGAGTCTCGTGCCAGCC
GATTTCACCCCCCGAGGACACACTCTCTCAATTTCAACCGCTTTGGAAGG
AAGTACCCGTTGTTACTACATATTTACGCATTTCACCTAAGACACTGCGC
TGACGACGCCATACGGGCCAACGTCTGCATTGGGAAATATTCTTCTCAAG
AGGCCGATATGTTTGTGGTTGGACGCTTCCCGGTTGGACGGTGTGCCATG
GTGATGAAGTGTTTGTTGTTTGGATTCAATAGTTGCCTCGCCCACCTCAA
TCCGCATGCAAACTCGAGCATTTGATGCCATGGTCAACGTGAAAGTGTGG
CTCTTGAGTTCATTCGACGATGATGACCATACTCTTCCAACGTCGTGCGC
AGGTACCAAACGGTTGAGCGGGTGGTCAACGGAACCTTCAGCATGCAAAA
AGAGTGGATGCTGTCTCGGGGTATGCCTTGGAATGAGGATGAGGTTGGTG
CACCCTGTAGCTTGTGGTAGCTTGTGGCATGACTGCCGTGTGTGGAAATA
TGAGCCATCCATCCGAGTCAGAGGCGCATTTTCGTCTCGATCGTTCGGTA
GTTGTCTTGACAACTTATGCGCACGTTGTACCTTGGCTGAACGGTGGTAT
TGAGAATACAAGCAGGAGCTTTTCACTCGCTGAGTTACAGCGAACAGTGC
CGAGTTCCCATTTGTGTGTCTCTCCAAAACCTAGGAAAACCGACCACAGC
AGGATGTGTTCGTGGCCTTGGTACTGGATGTGAAAAAGCTTTGCGCTAGT
TTACTCAAGCACCTTGCGGTGTACCACTACAATACTGTTTGCTTTTCGGT
GATGAAGCCAAGAGGTGGCTCCTAATATTTGAAACCCCCAACAGCCAGAA
ACGTACAAGTCGAAGGTTTGGGCCGTTGAGGCGTCATCACCGAATTCGAA
TTAGTCTTGTTGGCTGTTCTACCTTGGGCATCACAGGCACAGAGTACGGC
GCAGGAGATGTACCGCCGGATGTTCGCCATGAAGTTTCTCCCTCCCGGCC
GGGGTCTGTGGGCGATGGGCTCCAAGTTGACCACGGAAAGGCGGCTCTAC
GCGGCACTCAACAATTGCGCCTTCGTCAGCACCCAAGGTGGTGTTCGCTT
TTTCGCGCCCACATGTGTTATCGAGAAACGAAACGGTTTTGGTGGAGGTC
GGGGGAGATGTTGAAGGGCAGTGTATGCTTGGTACAAGCCCCCGCCGCTC
TTGTAAACTGAAACTACACTGCCTGCGGCGGCAAGAAAACGAGAACCAGA
GATGCATGCGCTGCGACCTTTCAAAACTCTCAATTGGTCAATTCGGGTAA
TCGGAATATTGATTTTCTCATGCACCAATGTGCGCATGCGTGTGTCTCAA
CCCATACGCTCAACGCTACCAAACCTCCACTTCGCGGACCCCCTATCCCG
CAGATCTTGCCAAGGACCCGACGGCTCCTTTCTGCTTTCTGATGGACGCG
TCCATGCTCGGAGTAGGGGTCGGTTTCGACACGAAAGGGGCGGGTACCAT
CAACATATTGGCGCCCGGCAGTGCGGAAGGTCTAAAGGTGGGGAGACGTA
GAGGGTTGTCTTGCACAAGAAAAGGGGGTAGAAAAATGATGCAATAATAT
ATAATATATCTTCAAGGCTATCTCTGTCTTTGTCGTACATGTACCAAGTG
TGATGCGCTATTTGTTTGTTTCGTGCTACCTTTGAAGGAATGTGGCGCAA
CCGATTTGGAACGCTTTCGCTTCATTCCGGTTTTGTTTAATGTTCAGGGG
CCGAGCGGATTGAAATTTGTGGTGGACGACTCTCGGGAGGGATGGCGAGA
CGCATTGAAGGTCCTCCTCGAGGCCTACTTCTTCGGCCATGCAGCACCCG
AGTTTGATGTGTCTCAGCTGAGGTGATCAAGGTGGCAGGGGTTTCCCTCG
CCATCCGCACAGCCACAGCGTTGTCTTAGAAAATTGCCGACCTATTCCAA
ACGGTTGCAGCACGTTTCTGGCAGAATTAGAAACGTCGTTGACACTGTGC
TCACCCCGGCTCATTCGCTAGTTGTCTTCCCTCGGCGCGGTTTTGATTTT
CAACCAACAGAGCCGTTGCAAAGGTTTACCTGAGTGAAGTCGACCCAAAG
GTTGCCTCAATTTGTGCAACACAAACCAATGGACCCACCGGCTGGGGTGC
AAACACTGCTTTCCTGGAAGCACTGAACCCCATGCTGCCGTACCTGTTAA
TGTTGCAGACCTGCCGGAGCACCAATCCGTGGATTCGGAGGAGTCAGTCA
AGGTAGCGCCCCGCTGATGGAGCTGATGGCAAGCATCAAGGCCACCCTGG
ATCCGTTGATTGGGAAACCCCTGTCGGTCACTGCCATCGTGGACATCATG
AACAAGGTGTGCCAGCGCAGTCCGTTTATTTGAAATCGTCGAGAGCCTTT
GCTCTCGAGACCGGAGCGAATATTTCCTCGGGTCTTGAGGTTGGATTGGT
ACGCGAACTTGTGGGGGGGGGTGTAGAAAAAGCTACCCAAGAGATGGCGA
GGTGATGCGGGTATAGTAGTCGTAGGAGCGTTCACTTAGCGGCAAGCTAG
CACCAGCAATCAACGTAACCAACTGGATGGACAAGGTTTTTGGCGCTACG
CGCCCCCGCTTCATTGGAATCGATTCCAAGGCAAAGACAATTTTCGAGTG
GAGAGATACAGAATAGGCTGGCTGCTACGCTGTGTAGAGTGTGTAGCCGC
AGAGAAGGAGCCAACGGAAAAAAAATCGGAAATGCTGCTCATCTGCTCGT
CAGGCGCGCACAAAAGAAAATAACAAAATGCTAACCTGTCCGGCGTCGAA
AGGTTTTGGGCGCTTCGCGCCCGCGTTTCATCGGAAGCGCTTCCAACGCA
TTGTTAGAGCGTAGGCGGGAGTGCTGCTGTTGCCAAGGGGACGCTTCAAG
CTGCACAAAATACATTACAAACGGGAAACTATCGGAATTTGCGCAAGAGC
GGGGGCGCCTCAGGAAGGACCTAGTTTCCACCCACGCCAAAAAGACTTTG
TTGAGACGCGAGCCAGCGCCAACCGAGTGCGCGCAGAGGATAGACAGAGA
GATTGGAGGGATACAAAAAGAAACCGTGGAGATTGGAACAGTGACGATGG
CCAGAACAAAGTGAACAACCGCCTGAGAAACGCCACACGCACACACACAA
TGTACGACAGAGATACTACTTCCTCTGTATCATAACTCTATGCCGTTATG
GGCGCTCTGTCGTTGGGTACTTATAAGTTGACGTTTAGCTTTTGGTTGGG
TGCGTTAGAAAGGCAAAACACATACAAAGCCGACTAAAAACAAACCAATA
AATCTAAGACCATGATATACACTAAAACTAGGTTAAAGTATGCCCATGTT
GGCCTTATTCGAGAATATTTTTGAGCCCTCTCCTGAGAATTTTTATGAGA
ATTCTTGTGATAATTCGTGATAACGACCCCAAACCTACCCCACACACACT
TCAAATGCAATGGACACGACCTCGAGTACGCCTCCACCTCGCCGCAAGGG
CGGCGAGCTTTCAGTGGGCCGCCGCATTGCAATTGCAGTGGAGGTTGCGC
TGGGTATTCCCCCGACTTAGACACTGTTTTTGCCCCGCAAGTGTCTTGGT
TTTAGTGCAGGCCCCTCAAGTGTCTTGGCTTTAATGTGAAACCAAAATGA
TCTTAGTTTTATTGTGAGGTCACTATATACTGCTCTGAGCATGGGGGGAC
GCGGCATGGATCGTTGAGTAGAGAGGGGAGGGGGTTTGGTTCGGGCCCTA
CTGTTGTTTTTTGCCCCGCAAGTGTCCTTGTTTTTGTGTGGGACTCCAAG
TGTCATGGTTTTAGTGTGGAACCCCCAAAAGTGTCTTGATTTGAGTGTGG
GGGTCACTATTATACTGGTTTTAGTATGGGGGACGCGTTATGGATGGCTG
AGTAGGGGGGGGGGTTAACTTTAGGGGATAATTTTTGTTTATTTAAAAAA
TGGGCGAAGCGAGTTTTTTTTCGCTAAAACACTTTCGTATGGACCCCCAA
AAAATCTCGCCCCTCCGCTCACATACACGAAGCCCCAGAGTTTGGGGGAG
GCAAAAAATTTTAGTTTTCCGTGTTCGTTCGTTCGTTCGCGCCGATCTTT
TCGCCGCCGTTTCCGCTATAGACCACCAATTTGAAAACTGGAGGGTTTGC
TGGAAAGATAATATGCCCCACTCCTCAGTGGACGTGTCGGTTTAGAGTTT
CGTGTCAAGTTCGCCGAGTTATCTGGATGCAGGTGGTTTATTTATCTTTG
AGGTGCCGGCGTTTGGCAAGTGCGCGACGTCCAAACGCCAAACAACCGCG
GCAGAGGACACCCTTTAAGTTAGGGGAGTCGTGTGCAGCCTTTTTTTTTG
CAATGTATACACATGTCGCCGAGGTTGGGCGAGTTTCGTGCTCGTGTGTT
CAGAACTCCGCCAGCACACACACGAACAAAAAAAAAAGACGGCGCAGCGA
GTTTCTGCTCTGCTGTGTGTCGTTTGTGAACTAATCGCCCGGTAGGTACT
TGTAGGGTTAGGGCTAGGATATTCTCTGTGCTGGTTAGATCTAAGCGAAG
TCACGTAGTCTGGGTCGCCCGAGATATATCTACATATACCTACATACAGC
AACACAGCAAGCACGGCAGAGCGGAGCAGCACCTGAGCAAAAAAAAAAAA
CGCGGGCCGGGGCTCCGCGGTTTAACAACTAGACTATGTACGTCCTGCAC
TACTGTTGTGTCGCTCCACCCTCTCTCGGAGTTCTCGAAAGGGCACTGAG
TGCCCTGGAGAGTTTCTTCCAGCCGAAATTCCGAAAATGAGTGAGTCGTC
TCACACGGAAGGCCAGAACCACGCACTTTCTTGATTTAAGCGACTTTGAC
GGCAACGACCACCCCAGTGCGCATCATAGATGACTCTTGGCGCCTCCACA
AAGTTTCAGCTTCATCCGTTGCCGCCTCGTTGTGTTTGGGACGGGTGGTC
AGCGATGGGTTGGAGGGCGCGCGGGCGCGCGTGGTATTGACCCGAAGATA
AACGTGTGGCTTGTGGCTTATCGCTGATGAAAACAAACACTGAAGGGCCC
CTGGCCAGAACCCCATGGTGTCTTTCTGTATGATGGGTTGCGTGCTGCTG
TGTTCGTGACGTTTGCCGGGGACAAAGGGTGAGGGGCTCCGACAACCCAT
AAACGTGACAGTCTCGCGAACTTTCCTCGATCTTTCGGATAATCACCCGC
CTATCGCCCTGCAGGCTTTAAACGCCGCAACACGCCAGCACAACAAAACT
GAACCTCAACGGATAGTAGGCGTAGCTCTACTCTGTGACAGTCAGGATTT
CCCACCGGCAATAGCGATGAGGCGCTATGATTTGATGTTCGCTGGGGACA
AAGGGTTGAGCGGCTCGATGCAAGCCACAACGAAGTGACACTCTCGCGTT
TTTTCTTCGATCTTTCCGATATCTGCTCCGCCGGCTTTTCGCGCACAAAA
GCTAGCACGCCGCAACACGCACGAGGACACCAACCCTCAACCCCGACGGG
GAGTATGCGTATTGTCTACGCTTCGCTCGTGCTACTCGTTGCGTCTTCCA
TGGAACGTAATAGACAAAACCGCGGCGGCCGCGGTCAACGTGCTGGTGGT
GTTGCGTCATGGCAAAGGAGTCCGTTTGTCGCAACTTCTACCGCAAACGT
GGGCCTGCCTTCGCTGCATGGAGATCGACACTAACGTGTATACGTGGTTT
TAGGTGCATATTATTTCATGATCCGTCAATGGGTTTTGCGCCAAGTTGGA
TTTCCCCTTTGCGAATTCAATGCATTCTTCAAAAAACATTCGGGCGTCTT
CACATAGCATGCGTCCGTCACTTGCACGTGCTACGGCGAGTGCCGCAGCC
ATCTCTAACCTCCGTCGCGCCGAAATATATCTTGCGCGTGTACCACACTC
GCGTGTGGCGGTGTCTGTGGCGTCCATCACGCCACCTTTTTGTCCTCCAC
AGATTTGCCCTTCTTTCGCCAAGCAATTGAGCCAAAAAAACAAAACTCCT
TTCGAGAACAGCACGCCGCATGCAGCGAGTGTGCCGTGCCCCACAATTGG
GACCTATCCTCTCTGAGTTTTGGGTTCGACTACGTGTTGTCGTTGTGTAC
GGAGAAAGAAGACATAGTGATGTTACGCTTTGGGTTGGGTTGGGTTGGAG
ACTACTGCAGGTCTTTTTTTCGGAAAAAACTATCAGCCACTGCTTTCTTG
TAAGGGGGAGGGTCAGACTTTGTGCCCCACCCACCCCCCTCCATGGAAGG
GGCGAAATATGGCCGATTTTGGGCCAACTCAATGTTTTCCGGCCGTTCAG
CCGCATGGCTCAAGCACCAGCCAAAAACAAATAAATGGGTTTCTTGCTCG
ATAAACGCCGGAGAATACAGATCGTACACATTCAGGTGGCGCAAAAACAT
AACGGCACAGACTTGTGATACACAGGAAGGATGAGATCAACAGATATGTG
ATGTGAGATTTCGGCGACATGTGAGATTGTGCACAGCATCCCGGTATATG
AGATGAGATGCTGAGTGTCATCAACAGGATAAAGAGAGGGTAGGCAGACA
CGCAGGAGAGGGTTGCAGCAGCCGAGGAGGCGTAATGGGAGAGACAGAGA
CAGAGACAATCAACGGGACGCGGTGTCACAGCTAAAAAAGTCAGATTTCA
GCGGAAATGCGGCTCTGTCAGGCTCTTAGAAGATTTAATGCTGCTCTCTC
AGGCAAGACAACGGAGCGATTCTAGCGGAAAGACAAATCGTAAGGCTACA
TAGGTTTTATCGACAGGCAGACGGTAATGGTTCGATCCTGCTAGAACTGC
CGCCGAATGGTTGTGGTTTCACTTGGCTCTCTACGTAGTCCAACATATTC
TTGGGGGCCCGTGGGCACTAAAAAAAGGACACACTTTGACGCCGCTAAAC
AAAACTCAGAAAAGTTGCCCGTGGGGTACCAACATCGATATTGCAGCACA
TGCACCTTCCGAAAGATGACGCGTATTCTCGTGTTAACCGGCACTGCATT
CCCAGGTAGGAGTATGTGTGGTGGCTGGAAATGTGCGAAGAACGGCAGAA
ATTGCGTTCGGCGACCCAGGGAGCGAAGAGTACATCGACCTCAAGAATTA
CGACAAGAATCCCAACAGGAGCGCTTTCGGGTGGGCGAGCAATAACTCTG
TACTAGCGAAGCTAGGCATGGACTACACCAAGGTACGATTTTGGATGGGA
CGAAGTACCTTCCCGAGATGTAGTACACTATCGTGTTGAGGACAATATAT
TTACCGCCAAGGCTTTCATTTACGGTATGGATTTGTGAAGACATGGACAA
CCATCATCCCCCTGACATGTTCCACGCGCTTCACAGGTGTGTGAGCGCAT
ACACCGAAACGGGGAACCAGGATTCGCGTGGCTGGAAAACATGCGAAGGT
ATGGTCGCATGGGGGACGAGAAGAACGACCGCGACATCAAGGCGATGGGT
GGGAACCCTTGTCTGGAGCAGACACTGGAGAGTTTTGAGATGTGCTGCCT
CGTGGAAACGTTTCCGGACAAGCACAAGTCCCTCGAGGACTATCTCACCA
CTCTAAGGTCAGACGAGATGTTTCCGGCTATGTCACGACGAACGTTGCAA
TCAACGGTTGCACTTCTGCTGAAAACGCTCCTTCGATCGAATGCTGACAT
GTGGCGTCCCGTTCCATTCTGTTCGAAATCTTTGGACAAAGTCTGATGTG
GACGCTGTTGTGTAGTCGCTGGGTGGTAAACGTGTCCTTACTAGGAATCG
TGCTTGAGATCCACGGCTTGGCCTTGCAGAAAGCTGGCGACAAGCGAACC
ACCTCTCTGTGTGTGCTTGTCCAGGTTCGCCTTCATGTACGCGAAGACTG
TGACATTGGGAGGCACTCACTGGGAGCAAACGAACGAGATTTTGTTCAGG
AATCGCCGAATTGGATGCAGGTACGCCTTCGTCGATCCCTCCCGCAACGC
ATGCGTTCGTGGTTCGTTCGTCTACCGTACGTCGGTCCTTTGAGCGTTGT
TCCTGTCCGGATCATATATTTTTCCGCAGCCGTATGGCCTCAATGCTGCG
CTGCTTCCTAGCACGGGGTAGAATCGTCCAGCTGGTCTAAATAGCTGCGT
TTCGACTCACCCGTTCGCACCCACTTTGACAGCATGAGCGGGCTGGCTCA
ATTTGTCGCGGCGAGGGGTCTAGGAACTTTACAGGAATGGTGCGAAGAGG
GCTACAACGCTGTCGCTCAAATTGACGAGGATCTGTCAGGCAAGATTCGT
CGGTTCATGCATCACTCTGTGAAGTAAAGACAAAATACTCCTCATACGCG
TACTTTCCCAAATCCGTTATTTTGCGAGACTACGGTATGGTAAGCCCGTT
GCTCTTGCTTGATCAAGTATGGCAACTTCCCCAGAACTTGCGCATGCCGC
GTTGGGTTTTCTTTTTATGCGGTGGCCGGTCATCACACCGCCAGCAAGAA
GCACATCATGACGGTAGATGCAGCGTGTTTGAATACCTTTTGACGTCCCT
TTGAGCGTTCGCCCGAATACCATGATGTGCGTTTGATTTCGATCGATTGC
TACAGCAGTAGGGGGAAACTGGAAGTTGGTGTGCCTAATCATTTGTCAGG
TGTACCTGTCAATCTGGCTCTCGGGGGCGTTAACGTCATGAACGTTGTTC
ACGCTGACATGAATCCAAGGAAAGCACTCACATTTTTGTAAACTCCTTCA
TTTTTGGGTGCGCACCTCACAGCCCATTTTGGCATCCCAACATCCATCAA
GACCACCTCTATCAAACCGAGCGGAACGGTATCTCTTCTTGCTGGGGCTA
CCCCAGGTACGCAACGAGTAGGCAGACGCACGATTTCACCAGCAGACCAG
CTTCATCGATCAACCAACCCACTTCGTGTCGACCGAGCAAATGTGGGGAG
GGGCATGTTTGCTGCGCTGAACCCTGTTAAGCGTTGCTGTTATTGTGCTT
CCCATGAGTTCCATTTAGAACGTACACATACATGCGAGAAGCGAAAACGG
TGCTTTGTCCGCGCGTTGCCGGCGTTGCCTAGATACTGATCACGTTGCTT
CGTTTTTCTGTCGGGGTTTTTATTCAGGCATGCACTATCCCGAGTCGAGG
TTCTACATACGGCGCGTAAGATTGTCTACAGATGCTGACGTGCTTGGACC
ATTGCGAGACGCGGGTTACAGGTTTGGTCCGACTGCTTGACTCTGCCTCC
CTGGTATGTACGTTACCGCGGTCCCCCCTCGCTTGACAAGCAGCAACCGA
CAAGCATCACGTTGTGAGTTTCCTCTTTGAACCGCATACGACAGCATGCC
CCTCTCGTCGGCGTCACGTACGTCTCAGGCTGGAGCCTGCAGCTGAAAAT
CCAGAGGGCACAGTGGTAGTTGAAGTCCCGGTCGACGCGGGGGAAGGCGT
TCGGACCGCAAGAGACCTGAGCATGTGGGAGCAGCTTAGCTTTGCTGCTT
TCTTGCAGCGATATTGGGCTGACAACCAGGCAAGCATGCTCCGTCGCATT
GCTGTGAAACTGAAAAGTTGGTCACTACCATGAGTGTTCCCTGGACATGT
AGGCTGCTTTCATCGGTCACCCAGACGTTGAGCGGGCTATTGAAGTTTGG
GAAACCCCCCTCGGTCATGCGGTGTGCTGTTCTCTCAGACCCCCCCTTTT
GGTTGAGGTGTTGAGCTTGGGTGGTGGCGAAATAAATGGGGAGCTATGTA
CGACTCGGTTACAACATCACACACGGAATACTAGGCTAGACTACTAGTGA
CCGACTTCAATAGTACCACCGTAAACAAACAACGAAAAACCTAGTAACTG
ACTCCAGTGGTATTCGGCGGCACATTTCTGGGCAAGTCGGGTCATGCGCT
GTCTGTCATGAAAGTGCATGACCTGACCCAGTAAATGTGAAGGCCCCCCA
GTGGTCGGATCTACAACCCAGCCGACGTCTTGAGTCGTGAGTAGGAATGG
TGGATGTGTTTGTAGATTAAGTACCCTGTTTTGCAGCCAATCCAACATGT
GGTACCAACTAACTGCTGGGGGAGGCCGGGCCAGCGTTTGCTCATCAAAT
ATGAGCGTGGGTCAGAAGGTTACTGACCCAGCCACTTCCGCCCGAGATTC
GGAATTATCGGCATGCCCATGCCCGTGCAGAGTGCAGAGCCGCAAGGTAC
ATACCACCCTCAGTGCAAGACAAGTGTTGACGCAATCCGATATGTTCTAC
AAGCTGATCCCTCGGAAATAAAACAAATAGACGCATGCCATACACACGTG
TGCGCTTCTGGGCATCACACCGTAGCATAGTCACTGCACCCACATCATTC
GCAGGGAGAGATCGGCGTGTTGAGGGGGGAGTTGTACAGAGGAGGGATGT
ACATGTGCGTGCGCGCAAAGATCCAAGAAAATATTCAGGAACACATTTAT
TTATAAAATAGTGAAGTCTGTCCGCCCAGTCCAACTTCTAGTGTAGACCG
ACGAGACGACACGCCGTAGCCTATGTGTCAAGTACAAACCCAGACTTCCT
CTCTGCGTATGATGTGGGGTCAGCGAATGTGCC
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig1113:10582..23564+

>mRNA_S-firma_F_contig1113.1498.1 ID=mRNA_S-firma_F_contig1113.1498.1|Name=mRNA_S-firma_F_contig1113.1498.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=4416bp|location=Sequence derived from alignment at S-firma_F_contig1113:10582..23564+ (Sphaerotrichia firma ET2_F female)
ATGCTGTCTTCTACTTGCTTCAGCCAAGTACACCATTCGCCCCGTGCCTT
CGTGCAGGCTGTGAGATTGGTTCGTCGGAAATCTGTCCTCTGTGGTGGAG
AACATCAGACAACAGCAGTCACCCCCCGGTCCTGCCGCAGCGGGAGCATC
ACATGGAGAGAAGTGATCGATCACCGCAGAGAGGGTCGCTGTTTGTGGAC
CTCGACCACCAGGACCCATCGTTTCGGCGTTGCCGAGCACCGCTGTCTTT
CGCAAGACTCCCGTCAAGTGGAACAACAATCTTCCTCTCCGCTCCAAAGA
TGCTGTCTTCTACTTGCTTCAGCCAAGTACACCATTCGCCCCGTGCCTTC
GTGCAGGCTGTGAGATTGGTTCGTCGGAAATCTGTCCTCTGTGGTGGAGA
ACATCAGACAACAGCAGTCACCCCCCGGTCCTGCCGCAGCGGGAGCATCA
CATGGAGAGAAGTGATCGATCACCGCAGAGAGGGTCGCTGTTTGTGGACC
TCGACCACCAGGACCCATCGTTTCGGCGTTGCCGAGCACCGCTGTCTTTC
GCAAGACTCCCGTCAAGTGGAACAACAATCTTCCTCTCCGCTCCAAAGCC
CGATATTGCGTGTTGGCGATGATGCTGCACTTGACGAGCTGGTAGCGACC
CGAAATATGCGAGTAGGCGGGCTAGGCACATCGAATCACGAAGAAATGGA
GTCGGACAAGATGGCCACACCGCGAGCGATGGCTTTTCGACTGTGCTCGC
ATTTCATCAACTCAGAAGGGCGTGCCAGCAAGCCTCGATTCGGGTTCAAC
GGTCTAGGAGAGCTCGTATACCAGCGTACGTACGCACGGTATCTGGGGGA
AGAGACGAACGACAAAGAGCAATGCCCGATATTGCGTGTTGGCGATGATG
CTGCACTTGACGAGCTGGTAGCGACCCGAAATATGCGAGTAGGCGGGCTA
GGCACATCGAATCACGAAGAAATGGAGTCGGACAAGATGGCCACACCGCG
AGCGATGGCTTTTCGACTGTGCTCGCATTTCATCAACTCAGAAGGGCGTG
CCAGCAAGCCTCGATTCGGGTTCAACGGTCTAGGAGAGCTCGTATACCAG
CGTACGTACGCACGGTATCTGGGGGAAGAGACGAACGACAAAGAGCAATG
GTACCAAACGGTTGAGCGGGTGGTCAACGGAACCTTCAGCATGCAAAAAG
AGTGGATGCTGTCTCGGGGTATGCCTTGGAATGAGGATGAGGTACCAAAC
GGTTGAGCGGGTGGTCAACGGAACCTTCAGCATGCAAAAAGAGTGGATGC
TGTCTCGGGGTATGCCTTGGAATGAGGATGAGGCACAGAGTACGGCGCAG
GAGATGTACCGCCGGATGTTCGCCATGAAGTTTCTCCCTCCCGGCCGGGG
TCTGTGGGCGATGGGCTCCAAGTTGACCACGGAAAGGCGGCTCTACGCGG
CACTCAACAATTGCGCCTTCGTCAGCACCCAAGGCACAGAGTACGGCGCA
GGAGATGTACCGCCGGATGTTCGCCATGAAGTTTCTCCCTCCCGGCCGGG
GTCTGTGGGCGATGGGCTCCAAGTTGACCACGGAAAGGCGGCTCTACGCG
GCACTCAACAATTGCGCCTTCGTCAGCACCCAAGATCTTGCCAAGGACCC
GACGGCTCCTTTCTGCTTTCTGATGGACGCGTCCATGCTCGGAGTAGGGG
TCGGTTTCGACACGAAAGGGGCGGGTACCATCAACATATTGGCGCCCGGC
AGTGCGGAAGGTCTAAAGATCTTGCCAAGGACCCGACGGCTCCTTTCTGC
TTTCTGATGGACGCGTCCATGCTCGGAGTAGGGGTCGGTTTCGACACGAA
AGGGGCGGGTACCATCAACATATTGGCGCCCGGCAGTGCGGAAGGTCTAA
AGGGGCCGAGCGGATTGAAATTTGTGGTGGACGACTCTCGGGAGGGATGG
CGAGACGCATTGAAGGTCCTCCTCGAGGCCTACTTCTTCGGCCATGCAGC
ACCCGAGTTTGATGTGTCTCAGCTGAGGGGCCGAGCGGATTGAAATTTGT
GGTGGACGACTCTCGGGAGGGATGGCGAGACGCATTGAAGGTCCTCCTCG
AGGCCTACTTCTTCGGCCATGCAGCACCCGAGTTTGATGTGTCTCAGCTG
AGACCTGCCGGAGCACCAATCCGTGGATTCGGAGGAGTCAGTCAAGGTAG
CGCCCCGCTGATGGAGCTGATGGCAAGCATCAAGGCCACCCTGGATCCGT
TGATTGGGAAACCCCTGTCGGTCACTGCCATCGTGGACATCATGAACAAG
ACCTGCCGGAGCACCAATCCGTGGATTCGGAGGAGTCAGTCAAGGTAGCG
CCCCGCTGATGGAGCTGATGGCAAGCATCAAGGCCACCCTGGATCCGTTG
ATTGGGAAACCCCTGTCGGTCACTGCCATCGTGGACATCATGAACAAGGT
AGGAGTATGTGTGGTGGCTGGAAATGTGCGAAGAACGGCAGAAATTGCGT
TCGGCGACCCAGGGAGCGAAGAGTACATCGACCTCAAGAATTACGACAAG
AATCCCAACAGGAGCGCTTTCGGGTGGGCGAGCAATAACTCTGTACTAGC
GAAGCTAGGCATGGACTACACCAAGGTAGGAGTATGTGTGGTGGCTGGAA
ATGTGCGAAGAACGGCAGAAATTGCGTTCGGCGACCCAGGGAGCGAAGAG
TACATCGACCTCAAGAATTACGACAAGAATCCCAACAGGAGCGCTTTCGG
GTGGGCGAGCAATAACTCTGTACTAGCGAAGCTAGGCATGGACTACACCA
AGGTGTGTGAGCGCATACACCGAAACGGGGAACCAGGATTCGCGTGGCTG
GAAAACATGCGAAGGTATGGTCGCATGGGGGACGAGAAGAACGACCGCGA
CATCAAGGCGATGGGTGGGAACCCTTGTCTGGAGCAGACACTGGAGAGTT
TTGAGATGTGCTGCCTCGTGGAAACGTTTCCGGACAAGCACAAGTCCCTC
GAGGACTATCTCACCACTCTAAGGTGTGTGAGCGCATACACCGAAACGGG
GAACCAGGATTCGCGTGGCTGGAAAACATGCGAAGGTATGGTCGCATGGG
GGACGAGAAGAACGACCGCGACATCAAGGCGATGGGTGGGAACCCTTGTC
TGGAGCAGACACTGGAGAGTTTTGAGATGTGCTGCCTCGTGGAAACGTTT
CCGGACAAGCACAAGTCCCTCGAGGACTATCTCACCACTCTAAGGTTCGC
CTTCATGTACGCGAAGACTGTGACATTGGGAGGCACTCACTGGGAGCAAA
CGAACGAGATTTTGTTCAGGAATCGCCGAATTGGATGCAGGTTCGCCTTC
ATGTACGCGAAGACTGTGACATTGGGAGGCACTCACTGGGAGCAAACGAA
CGAGATTTTGTTCAGGAATCGCCGAATTGGATGCAGCATGAGCGGGCTGG
CTCAATTTGTCGCGGCGAGGGGTCTAGGAACTTTACAGGAATGGTGCGAA
GAGGGCTACAACGCTGTCGCTCAAATTGACGAGGATCTGTCAGCATGAGC
GGGCTGGCTCAATTTGTCGCGGCGAGGGGTCTAGGAACTTTACAGGAATG
GTGCGAAGAGGGCTACAACGCTGTCGCTCAAATTGACGAGGATCTGTCAG
CCCATTTTGGCATCCCAACATCCATCAAGACCACCTCTATCAAACCGAGC
GGAACGGTATCTCTTCTTGCTGGGGCTACCCCAGCCCATTTTGGCATCCC
AACATCCATCAAGACCACCTCTATCAAACCGAGCGGAACGGTATCTCTTC
TTGCTGGGGCTACCCCAGGCATGCACTATCCCGAGTCGAGGTTCTACATA
CGGCGCGTAAGATTGTCTACAGATGCTGACGTGCTTGGACCATTGCGAGA
CGCGGGTTACAGGCATGCACTATCCCGAGTCGAGGTTCTACATACGGCGC
GTAAGATTGTCTACAGATGCTGACGTGCTTGGACCATTGCGAGACGCGGG
TTACAGGCTGGAGCCTGCAGCTGAAAATCCAGAGGGCACAGTGGTAGTTG
AAGTCCCGGTCGACGCGGGGGAAGGCGTTCGGACCGCAAGAGACCTGAGC
ATGTGGGAGCAGCTTAGCTTTGCTGCTTTCTTGCAGCGATATTGGGCTGA
CAACCAGGCAAGCATGCTCCGTCGCATTGCTGTGAAACTGAAAAGTTGGT
CACTACCATGAGCTGGAGCCTGCAGCTGAAAATCCAGAGGGCACAGTGGT
AGTTGAAGTCCCGGTCGACGCGGGGGAAGGCGTTCGGACCGCAAGAGACC
TGAGCATGTGGGAGCAGCTTAGCTTTGCTGCTTTCTTGCAGCGATATTGG
GCTGACAACCAGGCAAGCATGCTCCGTCGCATTGCTGTGAAACTGAAAAG
TTGGTCACTACCATGA
back to top