mRNA_S-firma_F_contig11127.1494.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig11127.1494.1
Unique NamemRNA_S-firma_F_contig11127.1494.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig11127.1494.1 vs. uniprot
Match: D7G6J3_ECTSI (Similar to ring finger protein 167 isoform 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J3_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 4.220e-15
Identity = 40/61 (65.57%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 CVDVWLAQNPSCPFCKSAVEPPSDEAKGTGSGXXXXLLGSSAASVRNFRRWLRNHERGSGA 183
            CVDVWLAQ+P+CPFCK  VEPPS E+K         L+GSSA  VR+ RRWLRNHERG GA
Sbjct:  180 CVDVWLAQSPTCPFCKQPVEPPSTESKA-------GLVGSSAVPVRSLRRWLRNHERGPGA 233
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BLAST of mRNA_S-firma_F_contig11127.1494.1 vs. uniprot
Match: A0A6H5JXB7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXB7_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 3.570e-14
Identity = 40/61 (65.57%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 CVDVWLAQNPSCPFCKSAVEPPSDEAKGTGSGXXXXLLGSSAASVRNFRRWLRNHERGSGA 183
            CVDVWLAQ+P+CPFCK  VEPPS E+K          LGSSAA  R+ RRWLRNHERG GA
Sbjct:  382 CVDVWLAQSPTCPFCKQPVEPPSTESK-------VGPLGSSAAPFRSVRRWLRNHERGPGA 435
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig11127.1494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6J3_ECTSI4.220e-1565.57Similar to ring finger protein 167 isoform 1 n=1 T... [more]
A0A6H5JXB7_9PHAE3.570e-1465.57RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig11127contigS-firma_F_contig11127:3396..4100 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7G6J3
PFAMszf-RING_2
Max annot lvl2759|Eukaryota
KEGG koko:K13148,ko:K19041
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0010498,GO:0016020,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0022414,GO:0030163,GO:0031090,GO:0032182,GO:0032183,GO:0032184,GO:0032446,GO:0032501,GO:0032502,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0051603,GO:0061458,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0098588,GO:0098805,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Evalue6.92e-16
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota
EC2.3.2.27
Descriptionubiquitin-protein transferase activity
COG categoryO
BRITEko00000,ko01000,ko03041,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size706
Cds size705
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815662.5265229-CDS-S-firma_F_contig11127:3395..41001622815662.5265229-CDS-S-firma_F_contig11127:3395..4100Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11127 3396..4100 -
1696949486.830395-CDS-S-firma_F_contig11127:3395..41001696949486.830395-CDS-S-firma_F_contig11127:3395..4100Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11127 3396..4100 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig11127.1494.1prot_S-firma_F_contig11127.1494.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig11127 3396..4100 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig11127.1494.1

>prot_S-firma_F_contig11127.1494.1 ID=prot_S-firma_F_contig11127.1494.1|Name=mRNA_S-firma_F_contig11127.1494.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=235bp
CVDVWLAQNPSCPFCKSAVEPPSDEAKGTGSGGGGGLLGSSAASVRNFRR
WLRNHERGSGAAVAEAAQQAVPPAPVAGAAGGSTERTSGGGGGGVAVERT
SGGAVGGFAPTGGGGGESEFSATAATLAATAVSSALTATEALGGSAAGGG
DGAAAGSGPGAAAAAAAAAAPDDVHDAAAVVVEEEQSQAEAPATESTASF
SGVELSAVSAETAADTAPPAAPLPGVVVGARVEAE
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mRNA from alignment at S-firma_F_contig11127:3396..4100-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig11127.1494.1 ID=mRNA_S-firma_F_contig11127.1494.1|Name=mRNA_S-firma_F_contig11127.1494.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=705bp|location=Sequence derived from alignment at S-firma_F_contig11127:3396..4100- (Sphaerotrichia firma ET2_F female)
TGCGTGGACGTCTGGCTTGCCCAGAACCCGTCCTGCCCGTTCTGCAAGAG
CGCGGTTGAGCCGCCGTCCGACGAAGCGAAAGGCACCGGCAGTGGCGGCG
GCGGCGGTCTCCTGGGTTCCTCGGCGGCGTCGGTGAGGAATTTCCGCCGC
TGGCTGAGAAATCACGAGCGGGGCTCGGGGGCTGCGGTGGCGGAGGCCGC
GCAGCAGGCGGTACCGCCGGCGCCGGTTGCAGGTGCAGCGGGGGGAAGTA
CAGAAAGAACGAGCGGCGGGGGCGGCGGCGGTGTCGCCGTCGAGCGGACG
AGCGGGGGGGCTGTTGGTGGGTTTGCGCCTACGGGTGGTGGGGGGGGTGA
ATCCGAATTTTCCGCTACCGCGGCAACGTTGGCGGCGACGGCGGTTTCTT
CGGCGCTGACCGCGACGGAGGCGCTGGGTGGGTCTGCCGCCGGAGGTGGG
GATGGTGCTGCCGCTGGCAGCGGTCCGGGCGCCGCCGCCGCCGCCGCCGC
TGCTGCTGCACCAGACGACGTGCATGATGCCGCCGCCGTTGTGGTAGAGG
AGGAGCAAAGCCAAGCCGAGGCTCCGGCGACGGAGTCGACGGCATCGTTT
TCCGGGGTGGAGCTCTCCGCGGTGTCGGCAGAGACCGCCGCTGACACGGC
ACCACCCGCGGCGCCCCTGCCGGGTGTGGTTGTCGGGGCAAGGGTAGAGG
CAGAG
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Coding sequence (CDS) from alignment at S-firma_F_contig11127:3396..4100-

>mRNA_S-firma_F_contig11127.1494.1 ID=mRNA_S-firma_F_contig11127.1494.1|Name=mRNA_S-firma_F_contig11127.1494.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1410bp|location=Sequence derived from alignment at S-firma_F_contig11127:3396..4100- (Sphaerotrichia firma ET2_F female)
TGCGTGGACGTCTGGCTTGCCCAGAACCCGTCCTGCCCGTTCTGCAAGAG
CGCGGTTGAGCCGCCGTCCGACGAAGCGAAAGGCACCGGCAGTGGCGGCG
GCGGCGGTCTCCTGGGTTCCTCGGCGGCGTCGGTGAGGAATTTCCGCCGC
TGGCTGAGAAATCACGAGCGGGGCTCGGGGGCTGCGGTGGCGGAGGCCGC
GCAGCAGGCGGTACCGCCGGCGCCGGTTGCAGGTGCAGCGGGGGGAAGTA
CAGAAAGAACGAGCGGCGGGGGCGGCGGCGGTGTCGCCGTCGAGCGGACG
AGCGGGGGGGCTGTTGGTGGGTTTGCGCCTACGGGTGGTGGGGGGGGTGA
ATCCGAATTTTCCGCTACCGCGGCAACGTTGGCGGCGACGGCGGTTTCTT
CGGCGCTGACCGCGACGGAGGCGCTGGGTGGGTCTGCCGCCGGAGGTGGG
GATGGTGCTGCCGCTGGCAGCGGTCCGGGCGCCGCCGCCGCCGCCGCCGC
TGCTGCTGCACCAGACGACGTGCATGATGCCGCCGCCGTTGTGGTAGAGG
AGGAGCAAAGCCAAGCCGAGGCTCCGGCGACGGAGTCGACGGCATCGTTT
TCCGGGGTGGAGCTCTCCGCGGTGTCGGCAGAGACCGCCGCTGACACGGC
ACCACCCGCGGCGCCCCTGCCGGGTGTGGTTGTCGGGGCAAGGGTAGAGG
CAGAGTGCGTGGACGTCTGGCTTGCCCAGAACCCGTCCTGCCCGTTCTGC
AAGAGCGCGGTTGAGCCGCCGTCCGACGAAGCGAAAGGCACCGGCAGTGG
CGGCGGCGGCGGTCTCCTGGGTTCCTCGGCGGCGTCGGTGAGGAATTTCC
GCCGCTGGCTGAGAAATCACGAGCGGGGCTCGGGGGCTGCGGTGGCGGAG
GCCGCGCAGCAGGCGGTACCGCCGGCGCCGGTTGCAGGTGCAGCGGGGGG
AAGTACAGAAAGAACGAGCGGCGGGGGCGGCGGCGGTGTCGCCGTCGAGC
GGACGAGCGGGGGGGCTGTTGGTGGGTTTGCGCCTACGGGTGGTGGGGGG
GGTGAATCCGAATTTTCCGCTACCGCGGCAACGTTGGCGGCGACGGCGGT
TTCTTCGGCGCTGACCGCGACGGAGGCGCTGGGTGGGTCTGCCGCCGGAG
GTGGGGATGGTGCTGCCGCTGGCAGCGGTCCGGGCGCCGCCGCCGCCGCC
GCCGCTGCTGCTGCACCAGACGACGTGCATGATGCCGCCGCCGTTGTGGT
AGAGGAGGAGCAAAGCCAAGCCGAGGCTCCGGCGACGGAGTCGACGGCAT
CGTTTTCCGGGGTGGAGCTCTCCGCGGTGTCGGCAGAGACCGCCGCTGAC
ACGGCACCACCCGCGGCGCCCCTGCCGGGTGTGGTTGTCGGGGCAAGGGT
AGAGGCAGAG
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