mRNA_S-firma_F_contig11124.1490.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig11124.1490.1
Unique NamemRNA_S-firma_F_contig11124.1490.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig11124.1490.1 vs. uniprot
Match: A0A418AWP9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AWP9_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 4.590e-20
Identity = 54/134 (40.30%), Postives = 83/134 (61.94%), Query Frame = 1 
Query:    4 EVEHRQRLHKAALASIKPTSKTHCKSALDRSRPESMGMAHMKFNPKKLRAEAERLERIRLENTALLKRMYAIMNQSVGSSATEFRPGLRLNKHQTPVLDSYVSAHSYVKGGAVPLDSLTFEKRRREQEAIEAEN 405
            EV   Q++H+  L  I+PTS +  K  LD + P+    AH+K N KK + ++++ ++I  EN  L+++M  I + +   +A EFRPG+RLN  QTP+LDSYVS  S  +G A+   S+  E R+R+ + IE EN
Sbjct:   16 EVARCQKIHQDKLRHIQPTSLSPAKGKLDNTAPQQH--AHLKANFKKAQMDSDKYKQIYGENQQLMRKMLKICDAAPSDAAVEFRPGMRLNTDQTPLLDSYVSVQSLTRGCAIDKGSMNGEFRQRQNDKIEEEN 147
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BLAST of mRNA_S-firma_F_contig11124.1490.1 vs. uniprot
Match: A0A024TLK8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TLK8_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.680e-19
Identity = 54/134 (40.30%), Postives = 83/134 (61.94%), Query Frame = 1 
Query:    4 EVEHRQRLHKAALASIKPTSKTHCKSALDRSRPESMGMAHMKFNPKKLRAEAERLERIRLENTALLKRMYAIMNQSVGSSATEFRPGLRLNKHQTPVLDSYVSAHSYVKGGAVPLDSLTFEKRRREQEAIEAEN 405
            EV   Q++H+  L  I+PTS +  K  LD + P+    AH+K N KK + ++++ ++I  EN  L+++M  I + +   +A EFRPG+RLN  QTP+LDSYVS  S  +G A+   S+  E R+R+ + IE EN
Sbjct:   16 EVARCQKIHQDKLRHIQPTSLSPAKGKLDNTAPQQH--AHLKANFKKAQMDSDKYKQIYGENQQLMRKMLKICDAAPSDAAVEFRPGMRLNTDQTPLLDSYVSVQSLTRGCAIDKGSMNGEFRQRQNDKIEEEN 147
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BLAST of mRNA_S-firma_F_contig11124.1490.1 vs. uniprot
Match: A0A485LRB0_9STRA (Aste57867_24171 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LRB0_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.280e-19
Identity = 54/134 (40.30%), Postives = 84/134 (62.69%), Query Frame = 1 
Query:    4 EVEHRQRLHKAALASIKPTSKTHCKSALDRSRPESMGMAHMKFNPKKLRAEAERLERIRLENTALLKRMYAIMNQSVGSSATEFRPGLRLNKHQTPVLDSYVSAHSYVKGGAVPLDSLTFEKRRREQEAIEAEN 405
            EV   Q++H+  L  I+PTS +  K  LD + P+    AH+K N KK + ++++  +I  EN  L+++M  I++ +   +A EFRPG+RLN  QTP+LDSYVS +S  +G A+   S+  E R+R+ + IE EN
Sbjct:   16 EVARCQKIHQDKLRHIQPTSLSPAKGKLDNTAPQVH--AHLKTNFKKAQMDSDKYRQIYGENQQLMRKMLKIVDTAPSDAAVEFRPGMRLNTDQTPILDSYVSVNSLSRGCAIDKGSMNGEFRQRQNDKIEDEN 147
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BLAST of mRNA_S-firma_F_contig11124.1490.1 vs. uniprot
Match: A0A6G0XNK4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XNK4_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.660e-15
Identity = 53/134 (39.55%), Postives = 79/134 (58.96%), Query Frame = 1 
Query:    4 EVEHRQRLHKAALASIKPTSKTHCKSALDRSRPESMGMAHMKFNPKKLRAEAERLERIRLENTALLKRMYAIMNQSVGSSATEFRPGLRLNKHQTPVLDSYVSAHSYVKGGAVPLDSLTFEKRRREQEAIEAEN 405
            EV   Q++H   L  ++PTS +  K  LD + P++   AH++ N KK + + ++ ++I  EN  L+++M  I +     +A EFRPG+RLN  QTPVLDSY+S  S  +G A    S+  E R+RE   IE EN
Sbjct:   16 EVARCQKIHHDKLRHMQPTSLSPAKGQLDNTAPQTH--AHLRANLKKAQMDMDKNKQIYGENQQLMRKMIKICDTIPSDTAVEFRPGMRLNTDQTPVLDSYMSMQSLSRGCA--KGSMNGEFRQREHNRIEDEN 145
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BLAST of mRNA_S-firma_F_contig11124.1490.1 vs. uniprot
Match: A0A7S3GE60_9EUKA (Hypothetical protein n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GE60_9EUKA)

HSP 1 Score: 76.3 bits (186), Expect = 9.490e-14
Identity = 55/135 (40.74%), Postives = 74/135 (54.81%), Query Frame = 1 
Query:    7 VEHRQRLHKAALASIKPTSKTHCKSALDRSRPESMGMAHMKFNPKKLRAEAERLERIRLENTALLKRMYAIMNQSVGS--SATEFRPGLRLNKHQTPVLDSYVSAHSYVKGGAVPLDSLTFEKRRREQEAIEAEN 405
            VE  QR+H+  L  +K TSK++ +  +D S P+     H+  N KK + E ER   I  ENT LL++M  IM Q  G   ++TEFRPGLRL+ HQ PVLD++           V   SL  + R+RE   I  EN
Sbjct:   17 VERCQRIHRDKLKQMKSTSKSNARPFMDNSAPKKY--MHLVQNLKKAQLEEERFATIERENTLLLEKMSKIMRQGPGRIVASTEFRPGLRLDTHQYPVLDTHKQ---------VTQKSLNRDYRKRELIRITEEN 140
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig11124.1490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A418AWP9_9STRA4.590e-2040.30Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A024TLK8_9STRA1.680e-1940.30Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A485LRB0_9STRA2.280e-1940.30Aste57867_24171 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0XNK4_9STRA2.660e-1539.55Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S3GE60_9EUKA9.490e-1440.74Hypothetical protein n=2 Tax=Palpitomonas bilix Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig11124contigS-firma_F_contig11124:149..553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog157072.XP_008876213.1
PFAMsKIAA1430
Max annot lvl2759|Eukaryota
Evalue2.76e-20
EggNOG OGs2CBSN@1|root,2S3B0@2759|Eukaryota
DescriptionKIAA1430 homologue
COG categoryS
Hectar predicted targeting categoryother localisation
Exons1
Model size405
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815662.3423214-CDS-S-firma_F_contig11124:148..5531622815662.3423214-CDS-S-firma_F_contig11124:148..553Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11124 149..553 +
1696949486.7522414-CDS-S-firma_F_contig11124:148..5531696949486.7522414-CDS-S-firma_F_contig11124:148..553Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11124 149..553 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig11124.1490.1prot_S-firma_F_contig11124.1490.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig11124 149..553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig11124.1490.1

>prot_S-firma_F_contig11124.1490.1 ID=prot_S-firma_F_contig11124.1490.1|Name=mRNA_S-firma_F_contig11124.1490.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=135bp
QEVEHRQRLHKAALASIKPTSKTHCKSALDRSRPESMGMAHMKFNPKKLR
AEAERLERIRLENTALLKRMYAIMNQSVGSSATEFRPGLRLNKHQTPVLD
SYVSAHSYVKGGAVPLDSLTFEKRRREQEAIEAEN
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mRNA from alignment at S-firma_F_contig11124:149..553+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig11124.1490.1 ID=mRNA_S-firma_F_contig11124.1490.1|Name=mRNA_S-firma_F_contig11124.1490.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=405bp|location=Sequence derived from alignment at S-firma_F_contig11124:149..553+ (Sphaerotrichia firma ET2_F female)
CAGGAAGTGGAGCACCGGCAGCGCCTCCACAAGGCCGCCCTTGCGTCCAT
CAAGCCCACAAGCAAAACACACTGCAAGTCAGCCCTGGACCGCAGCCGGC
CGGAGTCCATGGGCATGGCGCACATGAAGTTCAACCCAAAGAAGCTGCGG
GCGGAGGCGGAACGCCTGGAGCGGATCCGGCTGGAGAATACCGCGCTCCT
TAAGCGCATGTACGCCATTATGAACCAAAGCGTGGGCTCCAGTGCCACTG
AGTTTCGCCCCGGCCTCCGCCTCAACAAACACCAAACCCCGGTCCTGGAC
TCGTACGTCTCAGCGCATTCGTACGTCAAGGGCGGTGCGGTGCCCTTGGA
CAGCCTGACTTTTGAGAAGCGGCGACGGGAGCAGGAGGCCATTGAGGCAG
AGAAT
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Coding sequence (CDS) from alignment at S-firma_F_contig11124:149..553+

>mRNA_S-firma_F_contig11124.1490.1 ID=mRNA_S-firma_F_contig11124.1490.1|Name=mRNA_S-firma_F_contig11124.1490.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=810bp|location=Sequence derived from alignment at S-firma_F_contig11124:149..553+ (Sphaerotrichia firma ET2_F female)
CAGGAAGTGGAGCACCGGCAGCGCCTCCACAAGGCCGCCCTTGCGTCCAT
CAAGCCCACAAGCAAAACACACTGCAAGTCAGCCCTGGACCGCAGCCGGC
CGGAGTCCATGGGCATGGCGCACATGAAGTTCAACCCAAAGAAGCTGCGG
GCGGAGGCGGAACGCCTGGAGCGGATCCGGCTGGAGAATACCGCGCTCCT
TAAGCGCATGTACGCCATTATGAACCAAAGCGTGGGCTCCAGTGCCACTG
AGTTTCGCCCCGGCCTCCGCCTCAACAAACACCAAACCCCGGTCCTGGAC
TCGTACGTCTCAGCGCATTCGTACGTCAAGGGCGGTGCGGTGCCCTTGGA
CAGCCTGACTTTTGAGAAGCGGCGACGGGAGCAGGAGGCCATTGAGGCAG
AGAATCAGGAAGTGGAGCACCGGCAGCGCCTCCACAAGGCCGCCCTTGCG
TCCATCAAGCCCACAAGCAAAACACACTGCAAGTCAGCCCTGGACCGCAG
CCGGCCGGAGTCCATGGGCATGGCGCACATGAAGTTCAACCCAAAGAAGC
TGCGGGCGGAGGCGGAACGCCTGGAGCGGATCCGGCTGGAGAATACCGCG
CTCCTTAAGCGCATGTACGCCATTATGAACCAAAGCGTGGGCTCCAGTGC
CACTGAGTTTCGCCCCGGCCTCCGCCTCAACAAACACCAAACCCCGGTCC
TGGACTCGTACGTCTCAGCGCATTCGTACGTCAAGGGCGGTGCGGTGCCC
TTGGACAGCCTGACTTTTGAGAAGCGGCGACGGGAGCAGGAGGCCATTGA
GGCAGAGAAT
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